December 2013 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] MPI_Recv problem
by Ken Raffenetti 02 Dec '13

02 Dec '13

He was suggesting using print (cout) statements to verify the parameters of your MPI calls before the error occurs. ----- Original Message ----- > From: "Soheil Hooshdaran" <shooshdaran577(a)gmail.com> > To: "Pavan Balaji" <balaji(a)mcs.anl.gov> > Cc: discuss(a)mpich.org > Sent: Monday, December 2, 2013 8:06:06 AM > Subject: Re: [mpich-discuss] MPI_Recv problem > > > > What should I use? > > > Even the statement right after MPI_Sent doesn't execute. My code has > something like this: > //////////////////////in the root process > > while(i<iWorldSize) > { > cout << "executing send for the " << i << "th time" << endl; > MPI_Send( A[i], n/iWorldSize * m, MPI_INT, i, itag, MPI_COMM_WORLD ); > sent++; > cout << "executed send for the " << i << "th time, sending " << > n/iWorldSize * m << " bytes to processor " << i << endl; > > i+=n/iWorldSize; > }//end while > > > > > ////////////////////in the slave process > > while(sent) > { > cout << "**********sent= " << sent << endl; > cout << "\n\n\n**********Executing receive*******" << endl; > MPI_Recv(&buffer, n/iWorldSize*m, MPI_INT, 0, itag, MPI_COMM_WORLD, > &status); > sent=0; > cout << "**********receive executed***********" << endl; > } > > > > On Mon, Dec 2, 2013 at 5:21 PM, Pavan Balaji < balaji(a)mcs.anl.gov > > wrote: > > > > Did you try printing how many bytes you are receiving before calling > MPI_Recv? > > — Pavan > > > > On Dec 1, 2013, at 11:43 PM, Soheil Hooshdaran < > shooshdaran577(a)gmail.com > wrote: > > > Hello. Please tell me what is wrong with my program that it doesn't > > goes no further than executing MPI_Send() for the first time. > > The file is attached > > > > > > On Sat, Nov 30, 2013 at 7:02 PM, Soheil Hooshdaran < > > shooshdaran577(a)gmail.com > wrote: > > So what do I have to do now, sir? Especially regarding my Bcast()s > > a,d Recv()s > > > > > > On Sat, Nov 30, 2013 at 1:05 AM, Pavan Balaji < balaji(a)mcs.anl.gov > > > wrote: > > > > Please keep discuss(a)mpich.org cc’ed. > > > > On Nov 29, 2013, at 2:19 PM, Soheil Hooshdaran < > > shooshdaran577(a)gmail.com > wrote: > > > executing send for the 3th time > > > executed send for the 3th time, sending 40 bytes > > > Fatal error in MPI_Recv: Message truncated, error stack: > > > MPI_Recv(184).....................: MPI_Recv(buf=0xbff95c98, > > > count=0, MPI_INT, src=0, tag=1, MPI_COMM_WORLD, > > > status=0xbff95c70) failed > > > MPIDI_CH3U_Receive_data_found(131): Message from rank 0 and tag 1 > > > truncated; 160 bytes received but buffer size is 0 > > > > I don’t think I can explain the error any better than what the > > message above already says. > > > > -- > > Pavan Balaji > > http://www.mcs.anl.gov/~balaji > > > > > > <p1_Hooshdaran_static[debug].cpp> > > > > -- > Pavan Balaji > http://www.mcs.anl.gov/~balaji > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] MPI_Recv problem
by Soheil Hooshdaran 02 Dec '13

02 Dec '13

What should I use? Even the statement right after MPI_Sent doesn't execute. My code has something like this: //////////////////////in the root process while(i<iWorldSize) { cout << "executing send for the " << i << "th time" << endl; MPI_Send( A[i], n/iWorldSize * m, MPI_INT, i, itag, MPI_COMM_WORLD ); sent++; cout << "executed send for the " << i << "th time, sending " << n/iWorldSize * m << " bytes to processor " << i << endl; i+=n/iWorldSize; }//end while ////////////////////in the slave process while(sent) { cout << "**********sent= " << sent << endl; cout << "\n\n\n**********Executing receive*******" << endl; MPI_Recv(&buffer, n/iWorldSize*m, MPI_INT, 0, itag, MPI_COMM_WORLD, &status); sent=0; cout << "**********receive executed***********" << endl; } On Mon, Dec 2, 2013 at 5:21 PM, Pavan Balaji <balaji(a)mcs.anl.gov> wrote: > > Did you try printing how many bytes you are receiving before calling > MPI_Recv? > > — Pavan > > On Dec 1, 2013, at 11:43 PM, Soheil Hooshdaran <shooshdaran577(a)gmail.com> > wrote: > > > Hello. Please tell me what is wrong with my program that it doesn't goes > no further than executing MPI_Send() for the first time. > > The file is attached > > > > > > On Sat, Nov 30, 2013 at 7:02 PM, Soheil Hooshdaran < > shooshdaran577(a)gmail.com> wrote: > > So what do I have to do now, sir? Especially regarding my Bcast()s a,d > Recv()s > > > > > > On Sat, Nov 30, 2013 at 1:05 AM, Pavan Balaji <balaji(a)mcs.anl.gov> > wrote: > > > > Please keep discuss(a)mpich.org cc’ed. > > > > On Nov 29, 2013, at 2:19 PM, Soheil Hooshdaran <shooshdaran577(a)gmail.com> > wrote: > > > executing send for the 3th time > > > executed send for the 3th time, sending 40 bytes > > > Fatal error in MPI_Recv: Message truncated, error stack: > > > MPI_Recv(184).....................: MPI_Recv(buf=0xbff95c98, count=0, > MPI_INT, src=0, tag=1, MPI_COMM_WORLD, status=0xbff95c70) failed > > > MPIDI_CH3U_Receive_data_found(131): Message from rank 0 and tag 1 > truncated; 160 bytes received but buffer size is 0 > > > > I don’t think I can explain the error any better than what the message > above already says. > > > > -- > > Pavan Balaji > > http://www.mcs.anl.gov/~balaji > > > > > > <p1_Hooshdaran_static[debug].cpp> > > -- > Pavan Balaji > http://www.mcs.anl.gov/~balaji > >

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Re: [mpich-discuss] MPI_Recv problem
by Pavan Balaji 02 Dec '13

02 Dec '13

Did you try printing how many bytes you are receiving before calling MPI_Recv? — Pavan On Dec 1, 2013, at 11:43 PM, Soheil Hooshdaran <shooshdaran577(a)gmail.com> wrote: > Hello. Please tell me what is wrong with my program that it doesn't goes no further than executing MPI_Send() for the first time. > The file is attached > > > On Sat, Nov 30, 2013 at 7:02 PM, Soheil Hooshdaran <shooshdaran577(a)gmail.com> wrote: > So what do I have to do now, sir? Especially regarding my Bcast()s a,d Recv()s > > > On Sat, Nov 30, 2013 at 1:05 AM, Pavan Balaji <balaji(a)mcs.anl.gov> wrote: > > Please keep discuss(a)mpich.org cc’ed. > > On Nov 29, 2013, at 2:19 PM, Soheil Hooshdaran <shooshdaran577(a)gmail.com> wrote: > > executing send for the 3th time > > executed send for the 3th time, sending 40 bytes > > Fatal error in MPI_Recv: Message truncated, error stack: > > MPI_Recv(184).....................: MPI_Recv(buf=0xbff95c98, count=0, MPI_INT, src=0, tag=1, MPI_COMM_WORLD, status=0xbff95c70) failed > > MPIDI_CH3U_Receive_data_found(131): Message from rank 0 and tag 1 truncated; 160 bytes received but buffer size is 0 > > I don’t think I can explain the error any better than what the message above already says. > > -- > Pavan Balaji > http://www.mcs.anl.gov/~balaji > > > <p1_Hooshdaran_static[debug].cpp> -- Pavan Balaji http://www.mcs.anl.gov/~balaji

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Re: [mpich-discuss] Undefined reference to MPL
by Pavan Balaji 02 Dec '13

02 Dec '13

Actually, you are missing two: libmpl and libopa. But the latter might not be used for most common platforms. A second option, that we are still experimenting with, is to build mpich as a shared library. On more platforms libtool should generate automatic inter-library dependencies. So when you link against libmpich, it should automatically pick up the remaining libraries. We had this working earlier, though I haven’t tried it in a while. — Pavan On Dec 2, 2013, at 7:47 AM, Jeff Hammond <jeff.science(a)gmail.com> wrote: > "mpicc -show" will give you all the flags you need to link MPICH (or MVAPICH). You're missing more than one library. > > Jeff > > Sent from my iPhone > >> On Dec 2, 2013, at 2:48 AM, Francisco Pastor <paco(a)ceam.es> wrote: >> >> Hi >> >> I can only see -lmpich. Maybe should try -lmpl. >> >> MPI_PATH=/usr/local/mpich2-1.0.5p4 >> PAR_INCS=-I$(MPI_PATH)/src/include >> PAR_LIBS=-L$(MPI_PATH)/lib/ -lmpich >> >> >> In the meantime I installed mpich2-1.05p4 and the compilation has worked. Should I try to recompile with mpich-3.0.4 adding -lmpl? >> >> Thank you very much >> >> El 29/11/2013 11:37, Reuti escribió: >>> Hi, >>> >>>> Am 29.11.2013 um 09:07 schrieb Francisco Pastor: >>>> >>>> I recently installed mpich 3.0.4 in order to compile a meteorological model, RAMS 6.0. We installed the model time ago with mpich2-1.0.5p4. Now we want to build a new cluster under Ubuntu 12.04 and MPICH. >>>> >>>> When building the model I get this messages, the last ones in a longer list, and maybe they are related to mpich. As a new user of mpich I'm not sure where the problem is coming from. Should I install an older mpich2 version? >>>> >>>> Thanks for your help >>> How is RAMS linked during build - maybe it uses not the mpi... wrappers but links directly and missed to include -lmpl >>> >>> -- Reuti >>> >>> >>>> /usr/local/lib//libmpich.a(param_vals.o):param_vals.c:(.text+0xb4d): more undefined references to `MPL_env2bool' follow >>>> /usr/local/lib//libmpich.a(param_vals.o): In function `MPIR_Param_init_params': >>>> param_vals.c:(.text+0xbac): undefined reference to `MPL_env2range' >>>> param_vals.c:(.text+0xbd1): undefined reference to `MPL_env2range' >>>> param_vals.c:(.text+0xbf6): undefined reference to `MPL_env2range' >>>> param_vals.c:(.text+0xc1b): undefined reference to `MPL_env2range' >>>> param_vals.c:(.text+0xc38): undefined reference to `MPL_env2int' >>>> param_vals.c:(.text+0xc55): undefined reference to `MPL_env2int' >>>> /usr/local/lib//libmpich.a(mpid_init.o): In function `MPID_Init': >>>> mpid_init.c:(.text+0x194): undefined reference to `MPL_env2bool' >>>> /usr/local/lib//libmpich.a(mpid_vc.o): In function `MPIDI_Populate_vc_node_ids': >>>> mpid_vc.c:(.text+0xb66): undefined reference to `MPL_env2int' >>>> mpid_vc.c:(.text+0xb7d): undefined reference to `MPL_env2int' >>>> /usr/local/lib//libmpich.a(mpi_t_util.o): In function `MPIU_Tool_strncpy': >>>> mpi_t_util.c:(.text+0x49c): undefined reference to `MPL_strncpy' >>>> make: *** [rams-6.0-opt] Error 1 >>>> >>>> -- >>>> ----------- >>>> Dr. Francisco Pastor >>>> Meteorology department, Instituto Universitario CEAM-UMH >>>> http://www.ceam.es >>>> ----------- >>>> Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ >>>> Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es >>>> Researcher ID: http://www.researcherid.com/rid/B-8331-2008 >>>> Cosis profile: http://www.cosis.net/profile/francisco.pastor >>>> ----------- >>>> mail: paco(a)ceam.es >>>> skype: paco.pastor.guzman >>>> ----------- >>>> Parque Tecnologico, C/ Charles R. Darwin, 14 >>>> 46980 PATERNA (Valencia), Spain >>>> Tlf. 96 131 82 27 - Fax. 96 131 81 90 >>>> >>>> >>>> --------------------------------------------------------------------- >>>> Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen información reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvío a su dirección electrónica; no deberá copiar el mensaje ni divulgar su contenido a ninguna persona. >>>> >>>> Su dirección de correo electrónico junto a sus datos personales forman parte de un fichero titularidad de la Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgánica 15/1999, usted puede ejercitar sus derechos de acceso, rectificación, cancelación y, en su caso, oposición enviando una solicitud por escrito, acompañada de una fotocopia de su DNI dirigida a: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). >>>> >>>> This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. >>>> >>>> Your email address and personal data are included in a file belonging to the Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). >>>> >>>> >>>> >>>> _______________________________________________ >>>> discuss mailing list discuss(a)mpich.org >>>> To manage subscription options or unsubscribe: >>>> https://lists.mpich.org/mailman/listinfo/discuss >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >> >> -- >> ----------- >> Dr. Francisco Pastor >> Meteorology department, Instituto Universitario CEAM-UMH >> http://www.ceam.es >> ----------- >> Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ >> Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es >> Researcher ID: http://www.researcherid.com/rid/B-8331-2008 >> Cosis profile: http://www.cosis.net/profile/francisco.pastor >> ----------- >> mail: paco(a)ceam.es >> skype: paco.pastor.guzman >> ----------- >> Parque Tecnologico, C/ Charles R. Darwin, 14 >> 46980 PATERNA (Valencia), Spain >> Tlf. 96 131 82 27 - Fax. 96 131 81 90 >> >> >> --------------------------------------------------------------------- >> Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen información reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvío a su dirección electrónica; no deberá copiar el mensaje ni divulgar su contenido a ninguna persona. >> >> Su dirección de correo electrónico junto a sus datos personales forman parte de un fichero titularidad de la Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgánica 15/1999, usted puede ejercitar sus derechos de acceso, rectificación, cancelación y, en su caso, oposición enviando una solicitud por escrito, acompañada de una fotocopia de su DNI dirigida a: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). >> >> This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. >> >> Your email address and personal data are included in a file belonging to the Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). >> >> >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss -- Pavan Balaji http://www.mcs.anl.gov/~balaji

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Re: [mpich-discuss] Undefined reference to MPL
by Jeff Hammond 02 Dec '13

02 Dec '13

"mpicc -show" will give you all the flags you need to link MPICH (or MVAPICH). You're missing more than one library. Jeff Sent from my iPhone > On Dec 2, 2013, at 2:48 AM, Francisco Pastor <paco(a)ceam.es> wrote: > > Hi > > I can only see -lmpich. Maybe should try -lmpl. > > MPI_PATH=/usr/local/mpich2-1.0.5p4 > PAR_INCS=-I$(MPI_PATH)/src/include > PAR_LIBS=-L$(MPI_PATH)/lib/ -lmpich > > > In the meantime I installed mpich2-1.05p4 and the compilation has worked. Should I try to recompile with mpich-3.0.4 adding -lmpl? > > Thank you very much > > El 29/11/2013 11:37, Reuti escribió: >> Hi, >> >>> Am 29.11.2013 um 09:07 schrieb Francisco Pastor: >>> >>> I recently installed mpich 3.0.4 in order to compile a meteorological model, RAMS 6.0. We installed the model time ago with mpich2-1.0.5p4. Now we want to build a new cluster under Ubuntu 12.04 and MPICH. >>> >>> When building the model I get this messages, the last ones in a longer list, and maybe they are related to mpich. As a new user of mpich I'm not sure where the problem is coming from. Should I install an older mpich2 version? >>> >>> Thanks for your help >> How is RAMS linked during build - maybe it uses not the mpi... wrappers but links directly and missed to include -lmpl >> >> -- Reuti >> >> >>> /usr/local/lib//libmpich.a(param_vals.o):param_vals.c:(.text+0xb4d): more undefined references to `MPL_env2bool' follow >>> /usr/local/lib//libmpich.a(param_vals.o): In function `MPIR_Param_init_params': >>> param_vals.c:(.text+0xbac): undefined reference to `MPL_env2range' >>> param_vals.c:(.text+0xbd1): undefined reference to `MPL_env2range' >>> param_vals.c:(.text+0xbf6): undefined reference to `MPL_env2range' >>> param_vals.c:(.text+0xc1b): undefined reference to `MPL_env2range' >>> param_vals.c:(.text+0xc38): undefined reference to `MPL_env2int' >>> param_vals.c:(.text+0xc55): undefined reference to `MPL_env2int' >>> /usr/local/lib//libmpich.a(mpid_init.o): In function `MPID_Init': >>> mpid_init.c:(.text+0x194): undefined reference to `MPL_env2bool' >>> /usr/local/lib//libmpich.a(mpid_vc.o): In function `MPIDI_Populate_vc_node_ids': >>> mpid_vc.c:(.text+0xb66): undefined reference to `MPL_env2int' >>> mpid_vc.c:(.text+0xb7d): undefined reference to `MPL_env2int' >>> /usr/local/lib//libmpich.a(mpi_t_util.o): In function `MPIU_Tool_strncpy': >>> mpi_t_util.c:(.text+0x49c): undefined reference to `MPL_strncpy' >>> make: *** [rams-6.0-opt] Error 1 >>> >>> -- >>> ----------- >>> Dr. Francisco Pastor >>> Meteorology department, Instituto Universitario CEAM-UMH >>> http://www.ceam.es >>> ----------- >>> Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ >>> Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es >>> Researcher ID: http://www.researcherid.com/rid/B-8331-2008 >>> Cosis profile: http://www.cosis.net/profile/francisco.pastor >>> ----------- >>> mail: paco(a)ceam.es >>> skype: paco.pastor.guzman >>> ----------- >>> Parque Tecnologico, C/ Charles R. Darwin, 14 >>> 46980 PATERNA (Valencia), Spain >>> Tlf. 96 131 82 27 - Fax. 96 131 81 90 >>> >>> >>> --------------------------------------------------------------------- >>> Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen información reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvío a su dirección electrónica; no deberá copiar el mensaje ni divulgar su contenido a ninguna persona. >>> >>> Su dirección de correo electrónico junto a sus datos personales forman parte de un fichero titularidad de la Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgánica 15/1999, usted puede ejercitar sus derechos de acceso, rectificación, cancelación y, en su caso, oposición enviando una solicitud por escrito, acompañada de una fotocopia de su DNI dirigida a: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). >>> >>> This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. >>> >>> Your email address and personal data are included in a file belonging to the Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). >>> >>> >>> >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > > -- > ----------- > Dr. Francisco Pastor > Meteorology department, Instituto Universitario CEAM-UMH > http://www.ceam.es > ----------- > Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ > Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es > Researcher ID: http://www.researcherid.com/rid/B-8331-2008 > Cosis profile: http://www.cosis.net/profile/francisco.pastor > ----------- > mail: paco(a)ceam.es > skype: paco.pastor.guzman > ----------- > Parque Tecnologico, C/ Charles R. Darwin, 14 > 46980 PATERNA (Valencia), Spain > Tlf. 96 131 82 27 - Fax. 96 131 81 90 > > > --------------------------------------------------------------------- > Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen información reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvío a su dirección electrónica; no deberá copiar el mensaje ni divulgar su contenido a ninguna persona. > > Su dirección de correo electrónico junto a sus datos personales forman parte de un fichero titularidad de la Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgánica 15/1999, usted puede ejercitar sus derechos de acceso, rectificación, cancelación y, en su caso, oposición enviando una solicitud por escrito, acompañada de una fotocopia de su DNI dirigida a: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). > > This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. > > Your email address and personal data are included in a file belonging to the Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Undefined reference to MPL
by Francisco Pastor 02 Dec '13

02 Dec '13

Hi I can only see -lmpich. Maybe should try -lmpl. MPI_PATH=/usr/local/mpich2-1.0.5p4 PAR_INCS=-I$(MPI_PATH)/src/include PAR_LIBS=-L$(MPI_PATH)/lib/ -lmpich In the meantime I installed mpich2-1.05p4 and the compilation has worked. Should I try to recompile with mpich-3.0.4 adding -lmpl? Thank you very much El 29/11/2013 11:37, Reuti escribiï¿½: > Hi, > > Am 29.11.2013 um 09:07 schrieb Francisco Pastor: > >> I recently installed mpich 3.0.4 in order to compile a meteorological model, RAMS 6.0. We installed the model time ago with mpich2-1.0.5p4. Now we want to build a new cluster under Ubuntu 12.04 and MPICH. >> >> When building the model I get this messages, the last ones in a longer list, and maybe they are related to mpich. As a new user of mpich I'm not sure where the problem is coming from. Should I install an older mpich2 version? >> >> Thanks for your help > How is RAMS linked during build - maybe it uses not the mpi... wrappers but links directly and missed to include -lmpl > > -- Reuti > > >> /usr/local/lib//libmpich.a(param_vals.o):param_vals.c:(.text+0xb4d): more undefined references to `MPL_env2bool' follow >> /usr/local/lib//libmpich.a(param_vals.o): In function `MPIR_Param_init_params': >> param_vals.c:(.text+0xbac): undefined reference to `MPL_env2range' >> param_vals.c:(.text+0xbd1): undefined reference to `MPL_env2range' >> param_vals.c:(.text+0xbf6): undefined reference to `MPL_env2range' >> param_vals.c:(.text+0xc1b): undefined reference to `MPL_env2range' >> param_vals.c:(.text+0xc38): undefined reference to `MPL_env2int' >> param_vals.c:(.text+0xc55): undefined reference to `MPL_env2int' >> /usr/local/lib//libmpich.a(mpid_init.o): In function `MPID_Init': >> mpid_init.c:(.text+0x194): undefined reference to `MPL_env2bool' >> /usr/local/lib//libmpich.a(mpid_vc.o): In function `MPIDI_Populate_vc_node_ids': >> mpid_vc.c:(.text+0xb66): undefined reference to `MPL_env2int' >> mpid_vc.c:(.text+0xb7d): undefined reference to `MPL_env2int' >> /usr/local/lib//libmpich.a(mpi_t_util.o): In function `MPIU_Tool_strncpy': >> mpi_t_util.c:(.text+0x49c): undefined reference to `MPL_strncpy' >> make: *** [rams-6.0-opt] Error 1 >> >> -- >> ----------- >> Dr. Francisco Pastor >> Meteorology department, Instituto Universitario CEAM-UMH >> http://www.ceam.es >> ----------- >> Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ >> Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es >> Researcher ID: http://www.researcherid.com/rid/B-8331-2008 >> Cosis profile: http://www.cosis.net/profile/francisco.pastor >> ----------- >> mail: paco(a)ceam.es >> skype: paco.pastor.guzman >> ----------- >> Parque Tecnologico, C/ Charles R. Darwin, 14 >> 46980 PATERNA (Valencia), Spain >> Tlf. 96 131 82 27 - Fax. 96 131 81 90 >> >> >> --------------------------------------------------------------------- >> Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen informaciï¿½n reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvï¿½o a su direcciï¿½n electrï¿½nica; no deberï¿½ copiar el mensaje ni divulgar su contenido a ninguna persona. >> >> Su direcciï¿½n de correo electrï¿½nico junto a sus datos personales forman parte de un fichero titularidad de la Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgï¿½nica 15/1999, usted puede ejercitar sus derechos de acceso, rectificaciï¿½n, cancelaciï¿½n y, en su caso, oposiciï¿½n enviando una solicitud por escrito, acompaï¿½ada de una fotocopia de su DNI dirigida a: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). >> >> This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. >> >> Your email address and personal data are included in a file belonging to the Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). >> >> >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > -- ----------- Dr. Francisco Pastor Meteorology department, Instituto Universitario CEAM-UMH http://www.ceam.es ----------- Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es Researcher ID: http://www.researcherid.com/rid/B-8331-2008 Cosis profile: http://www.cosis.net/profile/francisco.pastor ----------- mail: paco(a)ceam.es skype: paco.pastor.guzman ----------- Parque Tecnologico, C/ Charles R. Darwin, 14 46980 PATERNA (Valencia), Spain Tlf. 96 131 82 27 - Fax. 96 131 81 90 --------------------------------------------------------------------- Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen informaciï¿½n reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvï¿½o a su direcciï¿½n electrï¿½nica; no deberï¿½ copiar el mensaje ni divulgar su contenido a ninguna persona. Su direcciï¿½n de correo electrï¿½nico junto a sus datos personales forman parte de un fichero titularidad de la Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgï¿½nica 15/1999, usted puede ejercitar sus derechos de acceso, rectificaciï¿½n, cancelaciï¿½n y, en su caso, oposiciï¿½n enviando una solicitud por escrito, acompaï¿½ada de una fotocopia de su DNI dirigida a: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. Your email address and personal data are included in a file belonging to the Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia).

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Re: [mpich-discuss] MPI_Recv problem
by Soheil Hooshdaran 01 Dec '13

01 Dec '13

Hello. Please tell me what is wrong with my program that it doesn't goes no further than executing MPI_Send() for the first time. The file is attached On Sat, Nov 30, 2013 at 7:02 PM, Soheil Hooshdaran <shooshdaran577(a)gmail.com > wrote: > So what do I have to do now, sir? Especially regarding my Bcast()s a,d > Recv()s > > > On Sat, Nov 30, 2013 at 1:05 AM, Pavan Balaji <balaji(a)mcs.anl.gov> wrote: > >> >> Please keep discuss(a)mpich.org cc’ed. >> >> On Nov 29, 2013, at 2:19 PM, Soheil Hooshdaran <shooshdaran577(a)gmail.com> >> wrote: >> > executing send for the 3th time >> > executed send for the 3th time, sending 40 bytes >> > Fatal error in MPI_Recv: Message truncated, error stack: >> > MPI_Recv(184).....................: MPI_Recv(buf=0xbff95c98, count=0, >> MPI_INT, src=0, tag=1, MPI_COMM_WORLD, status=0xbff95c70) failed >> > MPIDI_CH3U_Receive_data_found(131): Message from rank 0 and tag 1 >> truncated; 160 bytes received but buffer size is 0 >> >> I don’t think I can explain the error any better than what the message >> above already says. >> >> -- >> Pavan Balaji >> http://www.mcs.anl.gov/~balaji >> > >

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Re: [mpich-discuss] MPI_Recv problem
by "Antonio J. Peña" 01 Dec '13

01 Dec '13

Please check your code. You issued an MPI_Recv with count=0 (i.e., telling MPI that the receive buffer is 0 bytes long). Antonio On 11/30/2013 09:32 AM, Soheil Hooshdaran wrote: > So what do I have to do now, sir? Especially regarding my Bcast()s a,d > Recv()s > > > On Sat, Nov 30, 2013 at 1:05 AM, Pavan Balaji <balaji(a)mcs.anl.gov > <mailto:[email protected]>> wrote: > > > Please keep discuss(a)mpich.org <mailto:[email protected]> cc'ed. > > On Nov 29, 2013, at 2:19 PM, Soheil Hooshdaran > <shooshdaran577(a)gmail.com <mailto:[email protected]>> wrote: > > executing send for the 3th time > > executed send for the 3th time, sending 40 bytes > > Fatal error in MPI_Recv: Message truncated, error stack: > > MPI_Recv(184).....................: MPI_Recv(buf=0xbff95c98, > count=0, MPI_INT, src=0, tag=1, MPI_COMM_WORLD, status=0xbff95c70) > failed > > MPIDI_CH3U_Receive_data_found(131): Message from rank 0 and tag > 1 truncated; 160 bytes received but buffer size is 0 > > I don't think I can explain the error any better than what the > message above already says. > > -- > Pavan Balaji > http://www.mcs.anl.gov/~balaji <http://www.mcs.anl.gov/%7Ebalaji> > > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss -- Antonio J. Peï¿½a Postdoctoral Appointee Mathematics and Computer Science Division Argonne National Laboratory 9700 South Cass Avenue, Bldg. 240, Of. 3148 Argonne, IL 60439-4847 apenya(a)mcs.anl.gov www.mcs.anl.gov/~apenya

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