December 2014 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] Problem installing and using MPE
by Balaji, Pavan 16 Dec '14

16 Dec '14

Just to clarify -- MPE is a separate project than MPICH. We were originally integrating it into the MPICH tarball as well. We now ditribute it separately. -- Pavan > On Dec 16, 2014, at 9:07 AM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > Hi, Fateme, > > Unfortunately MPICH has removed MPE support since 2012. > > If you want to log events for debugging, you can check http://wiki.mpich.org/mpich/index.php/Debug_Event_Logging for an alternative. > If you want to profile MPI with event logging, you may want to take a look at MPI Tool support (http://wiki.mpich.org/mpich/index.php/Tool_interfaces_(MPI-T),_MPICH_parame…) or profiling tools like HPCToolkit and TAU that work with MPICH. > > Best, > — > Huiwei > >> On Dec 15, 2014, at 12:50 PM, Fateme Hendijani <fateme.hendijani(a)gmail.com> wrote: >> >> Hello, >> >> I am a newbie in MPI. I have installed MPICH-3.0.4 on my virtual machine, Ubuntu 14.04. It runs the cpi example and also compiles and runs the sample Hello World example. >> I need to create log files, using MPE. In the manuals, it is said that the MPE is included in MPICH, however, it is not. Therefore, I have installed the MPE2-1.3.0 with the following configuration options: >> sudo ./configure –prefix=/path/to/install/ --with-mpicc=/mirror/mpich2/bin/mpicc --with-mpilibs=-L/mirror/mpich2/lib/ --with-mpiinc=-I/mirror/mpich2/include/ --disable-f77 –enable-mpe_graphics –enable-mpedbg –enable-mpich –with-mpiio –enable-checkMPIwtime >> >> I had actually disabled the mpedbg, since while making, it went to a loop that could not find it. >> >> While using make command, it gave me some errors and warnings like the following. I have set the LD_LIBRARY_PATH and LIBRARY_PATH, but still cannot create a log file. >> >> 1- I don't know which version of MPICH and MPE to use, and from where to download (I have found and MPICH2 that has an MPE folder inside, however, some libs seem to be missing) >> >> 2- I appreciate your help for installing. >> >> Thanks, >> >> Fatemeh >> >> >> >> In file included from log_mpi_core.c:6997:0: >> log_mpi_io.c:1590:5: error: conflicting types for ‘MPI_File_write_at_all_end’ >> int MPI_File_write_at_all_end( MPI_File fh,void * buf,MPI_Status * status ) >> ^ >> In file included from /mirror/mpich2/include/mpi.h:2121:0, >> from log_mpi_core.c:10: >> /mirror/mpich2/include/mpio.h:203:5: note: previous declaration of ‘MPI_File_write_at_all_end’ was here >> int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); >> ^ >> In file included from log_mpi_core.c:6997:0: >> log_mpi_io.c:1689:5: error: conflicting types for ‘MPI_File_write_all_begin’ >> int MPI_File_write_all_begin( MPI_File fh,void * buf,int count,MPI_Datatype datatype ) >> ^ >> In file included from /mirror/mpich2/include/mpi.h:2121:0, >> from log_mpi_core.c:10: >> /mirror/mpich2/include/mpio.h:207:5: note: previous declaration of ‘MPI_File_write_all_begin’ was here >> int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) >> ^ >> In file included from log_mpi_core.c:6997:0: >> log_mpi_io.c:1722:5: error: conflicting types for ‘MPI_File_write_all_end’ >> int MPI_File_write_all_end( MPI_File fh,void * buf,MPI_Status * status ) >> ^ >> In file included from /mirror/mpich2/include/mpi.h:2121:0, >> from log_mpi_core.c:10: >> /mirror/mpich2/include/mpio.h:209:5: note: previous declaration of ‘MPI_File_write_all_end’ was here >> int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); >> ^ >> In file included from log_mpi_core.c:6997:0: >> log_mpi_io.c:1821:5: error: conflicting types for ‘MPI_File_write_ordered_begin’ >> int MPI_File_write_ordered_begin( MPI_File fh,void * buf,int count,MPI_Datatype datatype ) >> ^ >> In file included from /mirror/mpich2/include/mpi.h:2121:0, >> from log_mpi_core.c:10: >> /mirror/mpich2/include/mpio.h:213:5: note: previous declaration of ‘MPI_File_write_ordered_begin’ was here >> int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) >> ^ >> In file included from log_mpi_core.c:6997:0: >> log_mpi_io.c:1854:5: error: conflicting types for ‘MPI_File_write_ordered_end’ >> int MPI_File_write_ordered_end( MPI_File fh,void * buf,MPI_Status * status ) >> ^ >> In file included from /mirror/mpich2/include/mpi.h:2121:0, >> from log_mpi_core.c:10: >> /mirror/mpich2/include/mpio.h:215:5: note: previous declaration of ‘MPI_File_write_ordered_end’ was here >> int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); >> ^ >> make[4]: *** [log_mpi_core.o] Error 1 >> make[3]: *** [build_lib_bin] Error 2 >> make[2]: *** [all] Error 2 >> >> **** Making src/graphics .... >> make --no-print-directory build_lib_bin >> cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o mpe_graphics.no -c mpe_graphics.c >> cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xcolor.no -c xcolor.c >> cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xframe.no -c xframe.c >> cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xinit.no -c xinit.c >> cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xwmap.no -c xwmap.c >> cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xmouse.no -c xmouse.c >> cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xkey.no -c xkey.c >> /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o mpe_graphics.po -c mpe_graphics.c >> /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xcolor.po -c xcolor.c >> /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xframe.po -c xframe.c >> /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xinit.po -c xinit.c >> /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xwmap.po -c xwmap.c >> /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xmouse.po -c xmouse.c >> /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xkey.po -c xkey.c >> /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o visual_mess.po -c visual_mess.c >> visual_mess.c: In function ‘MPI_Bsend’: >> visual_mess.c:325:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:847:5: error: prototype declaration >> int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> visual_mess.c: In function ‘MPI_Bsend_init’: >> visual_mess.c:349:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:884:5: error: prototype declaration >> int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> visual_mess.c: In function ‘MPI_Send_init’: >> visual_mess.c:445:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:882:5: error: prototype declaration >> int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> visual_mess.c: In function ‘MPI_Ibsend’: >> visual_mess.c:481:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:857:5: error: prototype declaration >> int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> visual_mess.c: In function ‘MPI_Irsend’: >> visual_mess.c:546:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:861:5: error: prototype declaration >> int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> visual_mess.c: In function ‘MPI_Isend’: >> visual_mess.c:582:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:855:5: error: prototype declaration >> int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> visual_mess.c: In function ‘MPI_Issend’: >> visual_mess.c:618:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:859:5: error: prototype declaration >> int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> visual_mess.c: In function ‘MPI_Rsend’: >> visual_mess.c:679:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:851:5: error: prototype declaration >> int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> visual_mess.c: In function ‘MPI_Rsend_init’: >> visual_mess.c:703:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:888:5: error: prototype declaration >> int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> visual_mess.c: In function ‘MPI_Send’: >> visual_mess.c:739:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:842:5: error: prototype declaration >> int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> visual_mess.c: In function ‘MPI_Sendrecv’: >> visual_mess.c:763:8: error: argument ‘sendbuf’ doesn’t match prototype >> void * sendbuf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:894:5: error: prototype declaration >> int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, >> ^ >> visual_mess.c: In function ‘MPI_Ssend’: >> visual_mess.c:828:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:849:5: error: prototype declaration >> int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> visual_mess.c: In function ‘MPI_Ssend_init’: >> visual_mess.c:852:8: error: argument ‘buf’ doesn’t match prototype >> void * buf; >> ^ >> In file included from visual_mess.c:27:0: >> /mirror/mpich2/include/mpi.h:886:5: error: prototype declaration >> int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, >> ^ >> make[4]: *** [visual_mess.po] Error 1 >> make[3]: *** [build_lib_bin] Error 2 >> make[2]: *** [all] Error 2 >> >> **** Making src/collchk .... >> make --no-print-directory build_lib_bin >> make --no-print-directory /mirror/mpe2-1.3.0/lib/libmpe_collchk.a >> /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -c begin.c >> In file included from begin.c:5:0: >> ../include/collchk.h:25:5: error: conflicting types for ‘MPI_Add_error_string’ >> int MPI_Add_error_string(int errorcode, char *string); >> ^ >> In file included from ../include/collchk.h:20:0, >> from begin.c:5: >> /mirror/mpich2/include/mpi.h:1157:5: note: previous declaration of ‘MPI_Add_error_string’ was here >> int MPI_Add_error_string(int errorcode, const char *string); >> ^ >> make[5]: *** [begin.o] Error 1 >> make[4]: *** [default] Error 2 >> make[3]: *** [build_lib_bin] Error 2 >> make[2]: *** [all] Error 2 >> >> ...... >> >> make /mirror/mpe2-1.3.0/src/slog2sdk/trace_rlog/bin/rlog_print >> cc -I.. -I/usr/lib/jvm/java-7-openjdk-amd64/include -I/usr/lib/jvm/java-7-openjdk-amd64/include/linux -I../../src/logformat/trace -g -O2 -c trace_input.c >> cc -I.. -I/usr/lib/jvm/java-7-openjdk-amd64/include -I/usr/lib/jvm/java-7-openjdk-amd64/include/linux -I../../src/logformat/trace -g -O2 -c rlogutil.c >> rlogutil.c: In function ‘RLOG_CreateInputStruct’: >> rlogutil.c:107:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] >> fread(&length, sizeof(int), 1, pInput->f); >> ^ >> rlogutil.c:159:11: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] >> fread(&cur_rank, sizeof(int), 1, pInput->f); >> ^ >> rlogutil.c:167:11: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] >> fread(&pInput->pNumEventRecursions[rank_index], sizeof(int), 1, pInput->f); >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss -- Pavan Balaji ✉️ http://www.mcs.anl.gov/~balaji _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Problem installing and using MPE
by Rob Latham 16 Dec '14

16 Dec '14

On 12/15/2014 12:50 PM, Fateme Hendijani wrote: > > 2- I appreciate your help for installing. > > Thanks, > > Fatemeh > > > In file included from log_mpi_core.c:6997:0: > log_mpi_io.c:1590:5: error: conflicting types for > ‘MPI_File_write_at_all_end’ > int MPI_File_write_at_all_end( MPI_File fh,void * buf,MPI_Status * > status ) > ^ > In file included from /mirror/mpich2/include/mpi.h:2121:0, > from log_mpi_core.c:10: > /mirror/mpich2/include/mpio.h:203:5: note: previous declaration of > ‘MPI_File_write_at_all_end’ was here > int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status > *status); > ^ I think warnings like these are due to recent additions of "const" to MPI routines. Try the MPE from the git repository: http://git.mpich.org/mpe.git/ while "not supported", we do patch MPE from time to time, and of course community contributions would also be welcome :> ==rob -- Rob Latham Mathematics and Computer Science Division Argonne National Lab, IL USA _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Problem installing and using MPE
by Fateme Hendijani 16 Dec '14

16 Dec '14

Huiwei, Thanks for letting me know. I was struggling with it for almost 10 days. Is there any specific reason for this decision? Also, is there any other tool that MPICH supports for logging? Thanks again, Fatemeh On Tue, Dec 16, 2014 at 8:07 AM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > Hi, Fateme, > > Unfortunately MPICH has removed MPE support since 2012. > > If you want to log events for debugging, you can check > http://wiki.mpich.org/mpich/index.php/Debug_Event_Logging for an > alternative. > If you want to profile MPI with event logging, you may want to take a look > at MPI Tool support ( > http://wiki.mpich.org/mpich/index.php/Tool_interfaces_(MPI-T),_MPICH_parame…) > or profiling tools like HPCToolkit and TAU that work with MPICH. > > Best, > — > Huiwei > > > On Dec 15, 2014, at 12:50 PM, Fateme Hendijani < > fateme.hendijani(a)gmail.com> wrote: > > > > Hello, > > > > I am a newbie in MPI. I have installed MPICH-3.0.4 on my virtual > machine, Ubuntu 14.04. It runs the cpi example and also compiles and runs > the sample Hello World example. > > I need to create log files, using MPE. In the manuals, it is said that > the MPE is included in MPICH, however, it is not. Therefore, I have > installed the MPE2-1.3.0 with the following configuration options: > > sudo ./configure –prefix=/path/to/install/ > --with-mpicc=/mirror/mpich2/bin/mpicc --with-mpilibs=-L/mirror/mpich2/lib/ > --with-mpiinc=-I/mirror/mpich2/include/ --disable-f77 –enable-mpe_graphics > –enable-mpedbg –enable-mpich –with-mpiio –enable-checkMPIwtime > > > > I had actually disabled the mpedbg, since while making, it went to a > loop that could not find it. > > > > While using make command, it gave me some errors and warnings like the > following. I have set the LD_LIBRARY_PATH and LIBRARY_PATH, but still > cannot create a log file. > > > > 1- I don't know which version of MPICH and MPE to use, and from where to > download (I have found and MPICH2 that has an MPE folder inside, however, > some libs seem to be missing) > > > > 2- I appreciate your help for installing. > > > > Thanks, > > > > Fatemeh > > > > > > > > In file included from log_mpi_core.c:6997:0: > > log_mpi_io.c:1590:5: error: conflicting types for > ‘MPI_File_write_at_all_end’ > > int MPI_File_write_at_all_end( MPI_File fh,void * buf,MPI_Status * > status ) > > ^ > > In file included from /mirror/mpich2/include/mpi.h:2121:0, > > from log_mpi_core.c:10: > > /mirror/mpich2/include/mpio.h:203:5: note: previous declaration of > ‘MPI_File_write_at_all_end’ was here > > int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status > *status); > > ^ > > In file included from log_mpi_core.c:6997:0: > > log_mpi_io.c:1689:5: error: conflicting types for > ‘MPI_File_write_all_begin’ > > int MPI_File_write_all_begin( MPI_File fh,void * buf,int > count,MPI_Datatype datatype ) > > ^ > > In file included from /mirror/mpich2/include/mpi.h:2121:0, > > from log_mpi_core.c:10: > > /mirror/mpich2/include/mpio.h:207:5: note: previous declaration of > ‘MPI_File_write_all_begin’ was here > > int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, > MPI_Datatype datatype) > > ^ > > In file included from log_mpi_core.c:6997:0: > > log_mpi_io.c:1722:5: error: conflicting types for > ‘MPI_File_write_all_end’ > > int MPI_File_write_all_end( MPI_File fh,void * buf,MPI_Status * > status ) > > ^ > > In file included from /mirror/mpich2/include/mpi.h:2121:0, > > from log_mpi_core.c:10: > > /mirror/mpich2/include/mpio.h:209:5: note: previous declaration of > ‘MPI_File_write_all_end’ was here > > int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status > *status); > > ^ > > In file included from log_mpi_core.c:6997:0: > > log_mpi_io.c:1821:5: error: conflicting types for > ‘MPI_File_write_ordered_begin’ > > int MPI_File_write_ordered_begin( MPI_File fh,void * buf,int > count,MPI_Datatype datatype ) > > ^ > > In file included from /mirror/mpich2/include/mpi.h:2121:0, > > from log_mpi_core.c:10: > > /mirror/mpich2/include/mpio.h:213:5: note: previous declaration of > ‘MPI_File_write_ordered_begin’ was here > > int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int > count, MPI_Datatype datatype) > > ^ > > In file included from log_mpi_core.c:6997:0: > > log_mpi_io.c:1854:5: error: conflicting types for > ‘MPI_File_write_ordered_end’ > > int MPI_File_write_ordered_end( MPI_File fh,void * buf,MPI_Status * > status ) > > ^ > > In file included from /mirror/mpich2/include/mpi.h:2121:0, > > from log_mpi_core.c:10: > > /mirror/mpich2/include/mpio.h:215:5: note: previous declaration of > ‘MPI_File_write_ordered_end’ was here > > int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status > *status); > > ^ > > make[4]: *** [log_mpi_core.o] Error 1 > > make[3]: *** [build_lib_bin] Error 2 > > make[2]: *** [all] Error 2 > > > > **** Making src/graphics .... > > make --no-print-directory build_lib_bin > > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. > -I../../../include -DMPE_NOMPI -o mpe_graphics.no -c mpe_graphics.c > > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. > -I../../../include -DMPE_NOMPI -o xcolor.no -c xcolor.c > > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. > -I../../../include -DMPE_NOMPI -o xframe.no -c xframe.c > > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. > -I../../../include -DMPE_NOMPI -o xinit.no -c xinit.c > > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. > -I../../../include -DMPE_NOMPI -o xwmap.no -c xwmap.c > > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. > -I../../../include -DMPE_NOMPI -o xmouse.no -c xmouse.c > > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. > -I../../../include -DMPE_NOMPI -o xkey.no -c xkey.c > > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include > -I../../.. -I../../../include -I/mirror/mpich2/include/ -o > mpe_graphics.po -c mpe_graphics.c > > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include > -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xcolor.po -c > xcolor.c > > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include > -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xframe.po -c > xframe.c > > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include > -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xinit.po -c > xinit.c > > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include > -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xwmap.po -c > xwmap.c > > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include > -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xmouse.po -c > xmouse.c > > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include > -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xkey.po -c > xkey.c > > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include > -I../../.. -I../../../include -I/mirror/mpich2/include/ -o > visual_mess.po -c visual_mess.c > > visual_mess.c: In function ‘MPI_Bsend’: > > visual_mess.c:325:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:847:5: error: prototype declaration > > int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int > dest, int tag, > > ^ > > visual_mess.c: In function ‘MPI_Bsend_init’: > > visual_mess.c:349:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:884:5: error: prototype declaration > > int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, > int dest, int tag, > > ^ > > visual_mess.c: In function ‘MPI_Send_init’: > > visual_mess.c:445:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:882:5: error: prototype declaration > > int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, > int dest, int tag, > > ^ > > visual_mess.c: In function ‘MPI_Ibsend’: > > visual_mess.c:481:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:857:5: error: prototype declaration > > int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int > dest, int tag, > > ^ > > visual_mess.c: In function ‘MPI_Irsend’: > > visual_mess.c:546:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:861:5: error: prototype declaration > > int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int > dest, int tag, > > ^ > > visual_mess.c: In function ‘MPI_Isend’: > > visual_mess.c:582:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:855:5: error: prototype declaration > > int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int > dest, int tag, > > ^ > > visual_mess.c: In function ‘MPI_Issend’: > > visual_mess.c:618:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:859:5: error: prototype declaration > > int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int > dest, int tag, > > ^ > > visual_mess.c: In function ‘MPI_Rsend’: > > visual_mess.c:679:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:851:5: error: prototype declaration > > int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int > dest, int tag, > > ^ > > visual_mess.c: In function ‘MPI_Rsend_init’: > > visual_mess.c:703:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:888:5: error: prototype declaration > > int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, > int dest, int tag, > > ^ > > visual_mess.c: In function ‘MPI_Send’: > > visual_mess.c:739:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:842:5: error: prototype declaration > > int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int > dest, int tag, > > ^ > > visual_mess.c: In function ‘MPI_Sendrecv’: > > visual_mess.c:763:8: error: argument ‘sendbuf’ doesn’t match prototype > > void * sendbuf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:894:5: error: prototype declaration > > int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype > sendtype, int dest, > > ^ > > visual_mess.c: In function ‘MPI_Ssend’: > > visual_mess.c:828:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:849:5: error: prototype declaration > > int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int > dest, int tag, > > ^ > > visual_mess.c: In function ‘MPI_Ssend_init’: > > visual_mess.c:852:8: error: argument ‘buf’ doesn’t match prototype > > void * buf; > > ^ > > In file included from visual_mess.c:27:0: > > /mirror/mpich2/include/mpi.h:886:5: error: prototype declaration > > int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, > int dest, int tag, > > ^ > > make[4]: *** [visual_mess.po] Error 1 > > make[3]: *** [build_lib_bin] Error 2 > > make[2]: *** [all] Error 2 > > > > **** Making src/collchk .... > > make --no-print-directory build_lib_bin > > make --no-print-directory /mirror/mpe2-1.3.0/lib/libmpe_collchk.a > > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include > -I../../.. -I../../../include -I/mirror/mpich2/include/ -c begin.c > > In file included from begin.c:5:0: > > ../include/collchk.h:25:5: error: conflicting types for > ‘MPI_Add_error_string’ > > int MPI_Add_error_string(int errorcode, char *string); > > ^ > > In file included from ../include/collchk.h:20:0, > > from begin.c:5: > > /mirror/mpich2/include/mpi.h:1157:5: note: previous declaration of > ‘MPI_Add_error_string’ was here > > int MPI_Add_error_string(int errorcode, const char *string); > > ^ > > make[5]: *** [begin.o] Error 1 > > make[4]: *** [default] Error 2 > > make[3]: *** [build_lib_bin] Error 2 > > make[2]: *** [all] Error 2 > > > > ...... > > > > make /mirror/mpe2-1.3.0/src/slog2sdk/trace_rlog/bin/rlog_print > > cc -I.. -I/usr/lib/jvm/java-7-openjdk-amd64/include > -I/usr/lib/jvm/java-7-openjdk-amd64/include/linux > -I../../src/logformat/trace -g -O2 -c trace_input.c > > cc -I.. -I/usr/lib/jvm/java-7-openjdk-amd64/include > -I/usr/lib/jvm/java-7-openjdk-amd64/include/linux > -I../../src/logformat/trace -g -O2 -c rlogutil.c > > rlogutil.c: In function ‘RLOG_CreateInputStruct’: > > rlogutil.c:107:7: warning: ignoring return value of ‘fread’, declared > with attribute warn_unused_result [-Wunused-result] > > fread(&length, sizeof(int), 1, pInput->f); > > ^ > > rlogutil.c:159:11: warning: ignoring return value of ‘fread’, declared > with attribute warn_unused_result [-Wunused-result] > > fread(&cur_rank, sizeof(int), 1, pInput->f); > > ^ > > rlogutil.c:167:11: warning: ignoring return value of ‘fread’, declared > with attribute warn_unused_result [-Wunused-result] > > fread(&pInput->pNumEventRecursions[rank_index], sizeof(int), 1, > pInput->f); > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Problem installing and using MPE
by Lu, Huiwei 16 Dec '14

16 Dec '14

Hi, Fateme, Unfortunately MPICH has removed MPE support since 2012. If you want to log events for debugging, you can check http://wiki.mpich.org/mpich/index.php/Debug_Event_Logging for an alternative. If you want to profile MPI with event logging, you may want to take a look at MPI Tool support (http://wiki.mpich.org/mpich/index.php/Tool_interfaces_(MPI-T),_MPICH_parame…) or profiling tools like HPCToolkit and TAU that work with MPICH. Best, — Huiwei > On Dec 15, 2014, at 12:50 PM, Fateme Hendijani <fateme.hendijani(a)gmail.com> wrote: > > Hello, > > I am a newbie in MPI. I have installed MPICH-3.0.4 on my virtual machine, Ubuntu 14.04. It runs the cpi example and also compiles and runs the sample Hello World example. > I need to create log files, using MPE. In the manuals, it is said that the MPE is included in MPICH, however, it is not. Therefore, I have installed the MPE2-1.3.0 with the following configuration options: > sudo ./configure –prefix=/path/to/install/ --with-mpicc=/mirror/mpich2/bin/mpicc --with-mpilibs=-L/mirror/mpich2/lib/ --with-mpiinc=-I/mirror/mpich2/include/ --disable-f77 –enable-mpe_graphics –enable-mpedbg –enable-mpich –with-mpiio –enable-checkMPIwtime > > I had actually disabled the mpedbg, since while making, it went to a loop that could not find it. > > While using make command, it gave me some errors and warnings like the following. I have set the LD_LIBRARY_PATH and LIBRARY_PATH, but still cannot create a log file. > > 1- I don't know which version of MPICH and MPE to use, and from where to download (I have found and MPICH2 that has an MPE folder inside, however, some libs seem to be missing) > > 2- I appreciate your help for installing. > > Thanks, > > Fatemeh > > > > In file included from log_mpi_core.c:6997:0: > log_mpi_io.c:1590:5: error: conflicting types for ‘MPI_File_write_at_all_end’ > int MPI_File_write_at_all_end( MPI_File fh,void * buf,MPI_Status * status ) > ^ > In file included from /mirror/mpich2/include/mpi.h:2121:0, > from log_mpi_core.c:10: > /mirror/mpich2/include/mpio.h:203:5: note: previous declaration of ‘MPI_File_write_at_all_end’ was here > int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); > ^ > In file included from log_mpi_core.c:6997:0: > log_mpi_io.c:1689:5: error: conflicting types for ‘MPI_File_write_all_begin’ > int MPI_File_write_all_begin( MPI_File fh,void * buf,int count,MPI_Datatype datatype ) > ^ > In file included from /mirror/mpich2/include/mpi.h:2121:0, > from log_mpi_core.c:10: > /mirror/mpich2/include/mpio.h:207:5: note: previous declaration of ‘MPI_File_write_all_begin’ was here > int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) > ^ > In file included from log_mpi_core.c:6997:0: > log_mpi_io.c:1722:5: error: conflicting types for ‘MPI_File_write_all_end’ > int MPI_File_write_all_end( MPI_File fh,void * buf,MPI_Status * status ) > ^ > In file included from /mirror/mpich2/include/mpi.h:2121:0, > from log_mpi_core.c:10: > /mirror/mpich2/include/mpio.h:209:5: note: previous declaration of ‘MPI_File_write_all_end’ was here > int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); > ^ > In file included from log_mpi_core.c:6997:0: > log_mpi_io.c:1821:5: error: conflicting types for ‘MPI_File_write_ordered_begin’ > int MPI_File_write_ordered_begin( MPI_File fh,void * buf,int count,MPI_Datatype datatype ) > ^ > In file included from /mirror/mpich2/include/mpi.h:2121:0, > from log_mpi_core.c:10: > /mirror/mpich2/include/mpio.h:213:5: note: previous declaration of ‘MPI_File_write_ordered_begin’ was here > int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) > ^ > In file included from log_mpi_core.c:6997:0: > log_mpi_io.c:1854:5: error: conflicting types for ‘MPI_File_write_ordered_end’ > int MPI_File_write_ordered_end( MPI_File fh,void * buf,MPI_Status * status ) > ^ > In file included from /mirror/mpich2/include/mpi.h:2121:0, > from log_mpi_core.c:10: > /mirror/mpich2/include/mpio.h:215:5: note: previous declaration of ‘MPI_File_write_ordered_end’ was here > int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); > ^ > make[4]: *** [log_mpi_core.o] Error 1 > make[3]: *** [build_lib_bin] Error 2 > make[2]: *** [all] Error 2 > > **** Making src/graphics .... > make --no-print-directory build_lib_bin > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o mpe_graphics.no -c mpe_graphics.c > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xcolor.no -c xcolor.c > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xframe.no -c xframe.c > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xinit.no -c xinit.c > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xwmap.no -c xwmap.c > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xmouse.no -c xmouse.c > cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xkey.no -c xkey.c > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o mpe_graphics.po -c mpe_graphics.c > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xcolor.po -c xcolor.c > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xframe.po -c xframe.c > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xinit.po -c xinit.c > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xwmap.po -c xwmap.c > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xmouse.po -c xmouse.c > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xkey.po -c xkey.c > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o visual_mess.po -c visual_mess.c > visual_mess.c: In function ‘MPI_Bsend’: > visual_mess.c:325:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:847:5: error: prototype declaration > int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > visual_mess.c: In function ‘MPI_Bsend_init’: > visual_mess.c:349:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:884:5: error: prototype declaration > int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > visual_mess.c: In function ‘MPI_Send_init’: > visual_mess.c:445:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:882:5: error: prototype declaration > int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > visual_mess.c: In function ‘MPI_Ibsend’: > visual_mess.c:481:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:857:5: error: prototype declaration > int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > visual_mess.c: In function ‘MPI_Irsend’: > visual_mess.c:546:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:861:5: error: prototype declaration > int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > visual_mess.c: In function ‘MPI_Isend’: > visual_mess.c:582:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:855:5: error: prototype declaration > int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > visual_mess.c: In function ‘MPI_Issend’: > visual_mess.c:618:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:859:5: error: prototype declaration > int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > visual_mess.c: In function ‘MPI_Rsend’: > visual_mess.c:679:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:851:5: error: prototype declaration > int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > visual_mess.c: In function ‘MPI_Rsend_init’: > visual_mess.c:703:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:888:5: error: prototype declaration > int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > visual_mess.c: In function ‘MPI_Send’: > visual_mess.c:739:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:842:5: error: prototype declaration > int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > visual_mess.c: In function ‘MPI_Sendrecv’: > visual_mess.c:763:8: error: argument ‘sendbuf’ doesn’t match prototype > void * sendbuf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:894:5: error: prototype declaration > int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, > ^ > visual_mess.c: In function ‘MPI_Ssend’: > visual_mess.c:828:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:849:5: error: prototype declaration > int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > visual_mess.c: In function ‘MPI_Ssend_init’: > visual_mess.c:852:8: error: argument ‘buf’ doesn’t match prototype > void * buf; > ^ > In file included from visual_mess.c:27:0: > /mirror/mpich2/include/mpi.h:886:5: error: prototype declaration > int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, > ^ > make[4]: *** [visual_mess.po] Error 1 > make[3]: *** [build_lib_bin] Error 2 > make[2]: *** [all] Error 2 > > **** Making src/collchk .... > make --no-print-directory build_lib_bin > make --no-print-directory /mirror/mpe2-1.3.0/lib/libmpe_collchk.a > /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -c begin.c > In file included from begin.c:5:0: > ../include/collchk.h:25:5: error: conflicting types for ‘MPI_Add_error_string’ > int MPI_Add_error_string(int errorcode, char *string); > ^ > In file included from ../include/collchk.h:20:0, > from begin.c:5: > /mirror/mpich2/include/mpi.h:1157:5: note: previous declaration of ‘MPI_Add_error_string’ was here > int MPI_Add_error_string(int errorcode, const char *string); > ^ > make[5]: *** [begin.o] Error 1 > make[4]: *** [default] Error 2 > make[3]: *** [build_lib_bin] Error 2 > make[2]: *** [all] Error 2 > > ...... > > make /mirror/mpe2-1.3.0/src/slog2sdk/trace_rlog/bin/rlog_print > cc -I.. -I/usr/lib/jvm/java-7-openjdk-amd64/include -I/usr/lib/jvm/java-7-openjdk-amd64/include/linux -I../../src/logformat/trace -g -O2 -c trace_input.c > cc -I.. -I/usr/lib/jvm/java-7-openjdk-amd64/include -I/usr/lib/jvm/java-7-openjdk-amd64/include/linux -I../../src/logformat/trace -g -O2 -c rlogutil.c > rlogutil.c: In function ‘RLOG_CreateInputStruct’: > rlogutil.c:107:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] > fread(&length, sizeof(int), 1, pInput->f); > ^ > rlogutil.c:159:11: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] > fread(&cur_rank, sizeof(int), 1, pInput->f); > ^ > rlogutil.c:167:11: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] > fread(&pInput->pNumEventRecursions[rank_index], sizeof(int), 1, pInput->f); > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] ROMIO: path and filename length limit seems not verified
by Rob Latham 15 Dec '14

15 Dec '14

On 12/15/2014 12:40 PM, Eric Chamberland wrote: > Hi, > > I just reported this to OpenMPI (http://www.open-mpi.org/community/lists/users/2014/12/25997.php) but when trying with MPICH > 3.1.3, valgrind reports problems too. > > Someone kindly proposed a patch, but since the code seems to be shared by both > projects, I thought I should report it here too (or should I not?) I check in with the open-mpi list from time to time, but I pay more attention to mpich-discuss. No harm in letting both lists know about problems you find. > With valgrind, we detect: > > 1- two "Invalid read of size 1" > 2- Warning: invalid file descriptor -1 in syscall read() > 3- Syscall param writev(vector[...]) points to uninitialised byte(s) > > Setup to make this happens: thanks for the test case. Should be an easy fix, but I cannot get to it right this moment: https://trac.mpich.org/projects/mpich/ticket/2212 ==rob > > export > too_long=./this/is/a_very/long/path/that/contains/a/not/so/long/filename/but/trying/to/collectively/mpi_file_open/it/you/will/have/a/memory/corruption/resulting/of/invalide/writing/or/reading/past/the/end/of/one/or/some/hidden/strings/in/mpio/Simple/user/would/like/to/have/the/parameter/checked/and/an/error/returned/or/this/limit/removed > > mkdir -p $too_long > echo "hello world." > $too_long/toto.txt > > mpicc -o bug_MPI_File_open_path_too_long bug_MPI_File_open_path_too_long.c > > mpirun -np 2 valgrind ./bug_MPI_File_open_path_too_long $too_long/toto.txt > > This particular simple case doesn't segfault without valgrind, but in as > reported in my real case, it does! > > Thanks! > > Eric > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > -- Rob Latham Mathematics and Computer Science Division Argonne National Lab, IL USA _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Problem installing and using MPE
by Fateme Hendijani 15 Dec '14

15 Dec '14

Hello, I am a newbie in MPI. I have installed MPICH-3.0.4 on my virtual machine, Ubuntu 14.04. It runs the cpi example and also compiles and runs the sample Hello World example. I need to create log files, using MPE. In the manuals, it is said that the MPE is included in MPICH, however, it is not. Therefore, I have installed the MPE2-1.3.0 with the following configuration options: *sudo ./configure –prefix=/path/to/install/ **--with-mpicc=/mirror/mpich2/bin/mpicc * *--with-mpilibs=**-L/**mirror/mpich2/lib/ --with-mpiinc=**-I/**mirror/mpich2/include/ --disable-f77 –enable-mpe_graphics –enable-mpedbg –enable-mpich –with-mpiio –enable-checkMPIwtime* I had actually disabled the mpedbg, since while making, it went to a loop that could not find it. While using make command, it gave me some errors and warnings like the following. I have set the LD_LIBRARY_PATH and LIBRARY_PATH, but still cannot create a log file. 1- I don't know which version of MPICH and MPE to use, and from where to download (I have found and MPICH2 that has an MPE folder inside, however, some libs seem to be missing) 2- I appreciate your help for installing. Thanks, Fatemeh In file included from log_mpi_core.c:6997:0: log_mpi_io.c:1590:5: error: conflicting types for ‘MPI_File_write_at_all_end’ int MPI_File_write_at_all_end( MPI_File fh,void * buf,MPI_Status * status ) ^ In file included from /mirror/mpich2/include/mpi.h:2121:0, from log_mpi_core.c:10: /mirror/mpich2/include/mpio.h:203:5: note: previous declaration of ‘MPI_File_write_at_all_end’ was here int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); ^ In file included from log_mpi_core.c:6997:0: log_mpi_io.c:1689:5: error: conflicting types for ‘MPI_File_write_all_begin’ int MPI_File_write_all_begin( MPI_File fh,void * buf,int count,MPI_Datatype datatype ) ^ In file included from /mirror/mpich2/include/mpi.h:2121:0, from log_mpi_core.c:10: /mirror/mpich2/include/mpio.h:207:5: note: previous declaration of ‘MPI_File_write_all_begin’ was here int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ^ In file included from log_mpi_core.c:6997:0: log_mpi_io.c:1722:5: error: conflicting types for ‘MPI_File_write_all_end’ int MPI_File_write_all_end( MPI_File fh,void * buf,MPI_Status * status ) ^ In file included from /mirror/mpich2/include/mpi.h:2121:0, from log_mpi_core.c:10: /mirror/mpich2/include/mpio.h:209:5: note: previous declaration of ‘MPI_File_write_all_end’ was here int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); ^ In file included from log_mpi_core.c:6997:0: log_mpi_io.c:1821:5: error: conflicting types for ‘MPI_File_write_ordered_begin’ int MPI_File_write_ordered_begin( MPI_File fh,void * buf,int count,MPI_Datatype datatype ) ^ In file included from /mirror/mpich2/include/mpi.h:2121:0, from log_mpi_core.c:10: /mirror/mpich2/include/mpio.h:213:5: note: previous declaration of ‘MPI_File_write_ordered_begin’ was here int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ^ In file included from log_mpi_core.c:6997:0: log_mpi_io.c:1854:5: error: conflicting types for ‘MPI_File_write_ordered_end’ int MPI_File_write_ordered_end( MPI_File fh,void * buf,MPI_Status * status ) ^ In file included from /mirror/mpich2/include/mpi.h:2121:0, from log_mpi_core.c:10: /mirror/mpich2/include/mpio.h:215:5: note: previous declaration of ‘MPI_File_write_ordered_end’ was here int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); ^ make[4]: *** [log_mpi_core.o] Error 1 make[3]: *** [build_lib_bin] Error 2 make[2]: *** [all] Error 2 **** Making src/graphics .... make --no-print-directory build_lib_bin cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o mpe_graphics.no -c mpe_graphics.c cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xcolor.no -c xcolor.c cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xframe.no -c xframe.c cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xinit.no -c xinit.c cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xwmap.no -c xwmap.c cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xmouse.no -c xmouse.c cc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -DMPE_NOMPI -o xkey.no -c xkey.c /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o mpe_graphics.po -c mpe_graphics.c /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xcolor.po -c xcolor.c /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xframe.po -c xframe.c /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xinit.po -c xinit.c /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xwmap.po -c xwmap.c /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xmouse.po -c xmouse.c /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o xkey.po -c xkey.c /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -o visual_mess.po -c visual_mess.c visual_mess.c: In function ‘MPI_Bsend’: visual_mess.c:325:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:847:5: error: prototype declaration int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ visual_mess.c: In function ‘MPI_Bsend_init’: visual_mess.c:349:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:884:5: error: prototype declaration int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ visual_mess.c: In function ‘MPI_Send_init’: visual_mess.c:445:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:882:5: error: prototype declaration int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ visual_mess.c: In function ‘MPI_Ibsend’: visual_mess.c:481:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:857:5: error: prototype declaration int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ visual_mess.c: In function ‘MPI_Irsend’: visual_mess.c:546:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:861:5: error: prototype declaration int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ visual_mess.c: In function ‘MPI_Isend’: visual_mess.c:582:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:855:5: error: prototype declaration int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ visual_mess.c: In function ‘MPI_Issend’: visual_mess.c:618:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:859:5: error: prototype declaration int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ visual_mess.c: In function ‘MPI_Rsend’: visual_mess.c:679:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:851:5: error: prototype declaration int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ visual_mess.c: In function ‘MPI_Rsend_init’: visual_mess.c:703:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:888:5: error: prototype declaration int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ visual_mess.c: In function ‘MPI_Send’: visual_mess.c:739:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:842:5: error: prototype declaration int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ visual_mess.c: In function ‘MPI_Sendrecv’: visual_mess.c:763:8: error: argument ‘sendbuf’ doesn’t match prototype void * sendbuf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:894:5: error: prototype declaration int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, ^ visual_mess.c: In function ‘MPI_Ssend’: visual_mess.c:828:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:849:5: error: prototype declaration int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ visual_mess.c: In function ‘MPI_Ssend_init’: visual_mess.c:852:8: error: argument ‘buf’ doesn’t match prototype void * buf; ^ In file included from visual_mess.c:27:0: /mirror/mpich2/include/mpi.h:886:5: error: prototype declaration int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, ^ make[4]: *** [visual_mess.po] Error 1 make[3]: *** [build_lib_bin] Error 2 make[2]: *** [all] Error 2 **** Making src/collchk .... make --no-print-directory build_lib_bin make --no-print-directory /mirror/mpe2-1.3.0/lib/libmpe_collchk.a /mirror/mpich2/bin/mpicc -I.. -I../include -I/mirror/mpe2-1.3.0/include -I../../.. -I../../../include -I/mirror/mpich2/include/ -c begin.c In file included from begin.c:5:0: ../include/collchk.h:25:5: error: conflicting types for ‘MPI_Add_error_string’ int MPI_Add_error_string(int errorcode, char *string); ^ In file included from ../include/collchk.h:20:0, from begin.c:5: /mirror/mpich2/include/mpi.h:1157:5: note: previous declaration of ‘MPI_Add_error_string’ was here int MPI_Add_error_string(int errorcode, const char *string); ^ make[5]: *** [begin.o] Error 1 make[4]: *** [default] Error 2 make[3]: *** [build_lib_bin] Error 2 make[2]: *** [all] Error 2 ...... make /mirror/mpe2-1.3.0/src/slog2sdk/trace_rlog/bin/rlog_print cc -I.. -I/usr/lib/jvm/java-7-openjdk-amd64/include -I/usr/lib/jvm/java-7-openjdk-amd64/include/linux -I../../src/logformat/trace -g -O2 -c trace_input.c cc -I.. -I/usr/lib/jvm/java-7-openjdk-amd64/include -I/usr/lib/jvm/java-7-openjdk-amd64/include/linux -I../../src/logformat/trace -g -O2 -c rlogutil.c rlogutil.c: In function ‘RLOG_CreateInputStruct’: rlogutil.c:107:7: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&length, sizeof(int), 1, pInput->f); ^ rlogutil.c:159:11: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&cur_rank, sizeof(int), 1, pInput->f); ^ rlogutil.c:167:11: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&pInput->pNumEventRecursions[rank_index], sizeof(int), 1, pInput->f); _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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ROMIO: path and filename length limit seems not verified
by Eric Chamberland 15 Dec '14

15 Dec '14

Hi, I just reported this to OpenMPI (http://www.open-mpi.org/community/lists/users/2014/12/25997.php) but when trying with MPICH 3.1.3, valgrind reports problems too. Someone kindly proposed a patch, but since the code seems to be shared by both projects, I thought I should report it here too (or should I not?) With valgrind, we detect: 1- two "Invalid read of size 1" 2- Warning: invalid file descriptor -1 in syscall read() 3- Syscall param writev(vector[...]) points to uninitialised byte(s) Setup to make this happens: export too_long=./this/is/a_very/long/path/that/contains/a/not/so/long/filename/but/trying/to/collectively/mpi_file_open/it/you/will/have/a/memory/corruption/resulting/of/invalide/writing/or/reading/past/the/end/of/one/or/some/hidden/strings/in/mpio/Simple/user/would/like/to/have/the/parameter/checked/and/an/error/returned/or/this/limit/removed mkdir -p $too_long echo "hello world." > $too_long/toto.txt mpicc -o bug_MPI_File_open_path_too_long bug_MPI_File_open_path_too_long.c mpirun -np 2 valgrind ./bug_MPI_File_open_path_too_long $too_long/toto.txt This particular simple case doesn't segfault without valgrind, but in as reported in my real case, it does! Thanks! Eric _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] missing Fortran bindings in MPICH
by Junchao Zhang 15 Dec '14

15 Dec '14

Hi, Michael, You are right. I found MPI_Finalize did not an explicit interface in MPICH-3.0.4. The problem was fixed at least in MPICH-3.1.3. Intel Fortran compiler current does not TS29113. I will tell the Intel MPI team we need this feature. As I mentioned before, Cray ftn supports mpi_f08. From the website, I also think the latest IBM XLF is able to support mpi_f08, thought I don't have access to the software and be able to try it. We are going to add explicit interfaces for all routines in "use mpi". I will keep you updated. Thank you. --Junchao Zhang On Mon, Dec 15, 2014 at 4:26 AM, <Michael.Rachner(a)dlr.de> wrote: > > Dear Junchao, > > > > In another email of today to discuss(a)mpich.org I attached my > sharedmemtest.f90 test program. > > > > At the end of that file I added a small sbr check_ftn_bindings . It is > for checking for missing explicit Ftn-interfaces in the mpi-module. > > If you activate the USE-stmts in that sbr, you will get this output at > compile time (with MPICH-3.0.4 and INTEL-14.0.1 on a Linux-cluster): > > > > rachner@master:~/dat> mpif90 sharedmemtest.f90 > > sharedmemtest.f90(246): error #6580: Name in only-list does not exist. > [MPI_FINALIZE] > > use MYMPI, only: MPI_INIT, MPI_BARRIER, MPI_FINALIZE & ! <-- > MPI-2 routines > > -----------------------------------------------^ > > sharedmemtest.f90(249): error #6580: Name in only-list does not exist. > [MPI_WIN_ALLOCATE_SHARED] > > use MYMPI, only: MPI_WIN_ALLOCATE_SHARED, MPI_WIN_SHARED_QUERY, > MPI_GET_LIBRARY_VERSION ! <-- MPI-3 routines > > ------------------------^ > > sharedmemtest.f90(249): error #6580: Name in only-list does not exist. > [MPI_WIN_SHARED_QUERY] > > use MYMPI, only: MPI_WIN_ALLOCATE_SHARED, MPI_WIN_SHARED_QUERY, > MPI_GET_LIBRARY_VERSION ! <-- MPI-3 routines > > -------------------------------------------------^ > > compilation aborted for sharedmemtest.f90 (code 1) > > rachner@master:~/dat> > > > > > > You can see, that also for sbr MPI_FINALIZE there is no explicit > Ftn-interface in the mpi-module (“use mpi”). > > (By the way: In our MPICH-3.0.4 implementation there exist no > mpi_base.f90, only a mpi_base.mod file.) > > > > > > It is a good investment in the future, that MPICH has provided explicit > interfaces now for the mpi-f08 module. > > But: Do normal Ftn-compilers already support Ftn2008 features already > sufficiently, so that we can actually use that mpi_f08 module? > > There is the problem, I think. > > Have you tried, whether it works for the INTEL-Ftn-compiler? > > If it does not work, I suggest, you may contact INTEL, telling them, which > Ftn08-feature are desirable but still missing in their Ftn95 compiler. > > > > Greetings > > Michael Rachner > > > > > > *Von:* Junchao Zhang [mailto:[email protected]] > *Gesendet:* Freitag, 12. Dezember 2014 18:05 > *An:* <discuss(a)mpich.org> > *Betreff:* Re: [mpich-discuss] missing Fortran bindings in MPICH > > > > Hi, Michael, > > I checked and found MPI_FINALIZE did have an explicit interface, at > least in MPICH-3.1.3. You can search the file mpi_base.f90 in your MPICH > build. > > We recently fixed the explicit interface problem in MPI Fortran 2008 > bindings. You need to "use mpi_f08" in your code. A paper on that is at > http://dl.acm.org/citation.cfm?id=2642777 > > The new bindings are already included in MPICH-3.2a1. It requires > Fortran2008 + TS29113 capable compilers, such as Cray ftn 8.3.3+ or > gfortran-dev. If you'd like to have a try, I can instruct you how to do > that. > > > > Thanks. > > > > > > > > > > > > > --Junchao Zhang > > > > On Fri, Dec 12, 2014 at 5:55 AM, <Michael.Rachner(a)dlr.de> wrote: > > Dear developers of MPICH, > > For your convenience, I forward the emails in mvapich-discuss concerning > the missing Fortran bindings. > Possibly this I can encourage you a bit, adding (as OPENMPI did it > successfully) the missing explicit Ftn-interfaces in the mpi-module > for those MPI-routines with parameters of "Choice"-type? > > At least: You may add the explicit Ftn-interface for the sbr > MPI_FINALIZE . It is missing in MPICH-3.0.4 too. > > Greetings > Michael Rachner > > > > > > > -----Ursprüngliche Nachricht----- > Von: mvapich-discuss [mailto:[email protected]] > Im Auftrag von Michael.Rachner(a)dlr.de > Gesendet: Freitag, 12. Dezember 2014 12:38 > An: mvapich-discuss(a)cse.ohio-state.edu > Betreff: [mvapich-discuss] WG: WG: missing Fortran bindings in > MVAPICH2-2.1a > > Sorry, I wanted to send my email not to Jonathan alone, but to the > mvapich-discuss. > Michael > > > > -----Ursprüngliche Nachricht----- > Von: Rachner, Michael > Gesendet: Freitag, 12. Dezember 2014 10:03 > An: 'Jonathan Perkins' > Betreff: AW: [mvapich-discuss] WG: missing Fortran bindings in > MVAPICH2-2.1a > > Thank You, Jonathan, for this hint. > Indeed, the problem with the missing explicit Ftn-interfaces in the > mpi-module are the arguments of "choice"-type. Fortran 95 don't like them. > So the MPI-3.0 Standard document contains a complicated chapter 17.1 > with these things. > As a consequence, MPICH seems to have chosen the slim way omitting in the > mpi-module ("use mpi") the explicit Ftn-interfaces for MPI-routines with > choice-type arguments, whereas OPENMPI has chosen the cumbercome way > providing the explicit Ftn-interfaces even for these MPI-routines. They > succeeded. > For details: In November there were some emails discussing this issue in > the OPENMPI-forum. > > Greetings > Michael Rachner > > > -----Ursprüngliche Nachricht----- > Von: Jonathan Perkins [mailto:[email protected]] > Gesendet: Donnerstag, 11. Dezember 2014 16:17 > An: Rachner, Michael > Cc: mvapich-discuss(a)cse.ohio-state.edu > Betreff: Re: [mvapich-discuss] WG: missing Fortran bindings in > MVAPICH2-2.1a > > Hello Michael. My investigation turned up the same issue in MPICH-3.1.3. > MVAPICH2-2.1a is based on MPICH-3.1.2 so it inherits the same behavior. > > Here is a snippet from MPICH's user guide: > > 4.2 Special Issues for Fortran > > MPICH provides two kinds of support for Fortran programs. For > Fortran 77 programmers, the file mpif.h provides the definitions of > the MPI constants such as MPI COMM WORLD. Fortran 90 programmers > should use the MPI module instead; this provides all of the > definitions as well as interface definitions for many of the MPI > functions. However, this MPI module does not provide full Fortran 90 > support; in particular, interfaces for the routines, such as MPI > Send, that take “choice” arguments are not provided. > > It sounds like these are routines with ``choice'' arguments. > > On Thu, Dec 11, 2014 at 01:29:03PM +0000, Michael.Rachner(a)dlr.de wrote: > > Dear developers, > > > > I have just found, that exactly the same 11 missing Ftn-interfaces are > also missing in MPICH-3.0.4, MSMPI-5.0, IMPI-5.0.0 . > > So that looks, as if you all have inherited these missing interfaces > from MPICH. > > > > In contrast, with OPENMPI-1.8.2 all explicit Ftn-interfaces for > MPI-routines needed by our CFD-code are present. Compliment! > > > > Greetings > > Michael Rachner > > > > > > Von: mvapich-discuss > > [mailto:[email protected]] Im Auftrag von > > Michael.Rachner(a)dlr.de > > Gesendet: Donnerstag, 11. Dezember 2014 13:12 > > An: mvapich-discuss(a)cse.ohio-state.edu > > Betreff: [mvapich-discuss] missing Fortran bindings in MVAPICH2-2.1a > > > > Dear developers of MVAPICH2, > > > > I found, that the explicit interfaces in the mpi-module are still > missing in MVAPICH2-2.1a (with INTEL-14.0.4) for these 11 MPI-routines: > > MPI_BCAST > > MPI_GATHER , MPI_GATHERV > > MPI_REDUCE , MPI_ALLREDUCE > > MPI_SCATTER, MPI_SCATTERV > > MPI_SSEND , MPI_RECV > > MPI_WIN_ALLOCATE_SHARED, MPI_WIN_SHARED_QUERY > > > > Greetings > > Michael Rachner > > > > > _______________________________________________ > > mvapich-discuss mailing list > > mvapich-discuss(a)cse.ohio-state.edu > > http://mailman.cse.ohio-state.edu/mailman/listinfo/mvapich-discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Bug in MPI_WIN_SHARED_QUERY using MPICH-3.0.4 from Fortran95-code
by Junchao Zhang 15 Dec '14

15 Dec '14

Michael, I installed mpich-3.0.4 and could reproduce the bug you reported. I also found it happened in C code. So the bug was not related to F90 bindings. Fortunately, I think the bug was fixed. With MPICH-3.1.3, with either C or Fortran code, the problem disappears. Thanks. --Junchao Zhang On Mon, Dec 15, 2014 at 9:56 AM, Rajeev Thakur <thakur(a)mcs.anl.gov> wrote: > > I don't see the problem with the latest version of MPICH on my laptop. > This is what I get: > > ---Info-print just BEFORE calling MPI_WIN_QUERY: idisplace_unit= > -6666 > ===Info-print just AFTER calling MPI_WIN_QUERY: idisplace_unit= > 1 > > Rajeev > > > On Dec 15, 2014, at 4:21 AM, Michael.Rachner(a)dlr.de wrote: > > > Dear Junchao, > > > > I attached a downsized Fortran95 program for testing the MPI-3 shared > memory feature (MPI_WIN_ALLOCATE_SHARED, MPI_WIN_SHARED_QUERY). > > You may add it to your MPICH test suite. > > (The program is not secret, so I place it here for everybody, because it > may serve also as an example, how to do the shared memory coding in a > Ftn-code.) > > > > In that program I have inserted 2 ad-hoc prints, just before and just > after the call of sbr MPI_WIN_SHARED_QUERY, > > which print the value of the 4th-parameter DISP_UNIT (named > idisplace_unit in the code) of that sbr . > > > > You can run the program by: > > mpif90 sharedmemtest.f90 > > mpiexec -np 2 -bind-to core -prepend-rank ./a.out > > > > On our LINUX cluster with MPICH-3.0.4 and Intel-14.0.1 the 2 > print-stmts write this: > > > > [0] ---Info-print just BEFORE calling MPI_WIN_QUERY: idisplace_unit= > -6666 ß -6666 is my arbitrary initialization value > > [0] ===Info-print just AFTER calling MPI_WIN_QUERY: idisplace_unit= > -6666 > > [1] ---Info-print just BEFORE calling MPI_WIN_QUERY: idisplace_unit= > -6666 > > [1] ===Info-print just AFTER calling MPI_WIN_QUERY: idisplace_unit= > -6666 > > > > You see, that sbr MPI_WIN_SHARED_QUERY does not overwrite the > initialized value, but should do it. > > I observed the same wrong behavior also in our Fortran95-CFD-code. > > > > I cannot easily install another MPICH-version. We have only MPICH-3.0.4 > . So, do you find that behavior with that program also with the most recent > MPICH-version? > > > > Greetings > > Michael Rachner > > > > > > > > Von: Junchao Zhang [mailto:[email protected]] > > Gesendet: Freitag, 12. Dezember 2014 20:50 > > An: <discuss(a)mpich.org> > > Betreff: Re: [mpich-discuss] Bug in MPI_WIN_SHARED_QUERY using > MPICH-3.0.4 from Fortran95-code > > > > Michael, > > I could not reproduce the problem with MPICH master. I checked MPICH's > F90 binding of this routine. It looks good. There are C tests for this > routine in MPICH test suite. They also ran fine. > > Could you either upgrade your MPI to MPICH-3.1.3 or send me your test > case? > > Thanks. > > > > --Junchao Zhang > > > > On Fri, Dec 12, 2014 at 4:53 AM, <Michael.Rachner(a)dlr.de> wrote: > > Dear developers of MPICH, > > > > I am running MPICH-3.0.4 with a Fortran95-code on a LINUX-cluster using > the INTEL-14.0.1 Ftn-compiler. > > In that code I employ the shared memory feature (using > MPI_WIN_ALLOCATE_SHARED and MPI_WIN_SHARED_QUERY). > > It works fine, but nevertheless I detected a little bug in > MPI_WIN_SHARED_QUERY: > > > > MPI_WIN_SHARED_QUERY(WIN, RANK, SIZE, DISP_UNIT, BASEPTR, IERROR) > > > > The MPI-3.0 Standard document (chapter 11.2, on p. 410) prescribes that > the 4th parameter DISP_UNIT is a result from the call of this sbr. > > However, with MPICH no value is returned for DISP_UNIT. > > > > You can easily test that, by setting DISP_UNIT to a control number ( > e.g. DISP_UNIT = -7777 ) just before the call of sbr > MPI_WIN_SHARED_QUERY. > > Just after that sbr-call the variable DISP_UNIT still contains that > control number, but should not. > > > > Greetings > > Michael Rachner > > > > > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > <sharedmemtest.f90>_______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Bug in MPI_WIN_SHARED_QUERY using MPICH-3.0.4 from Fortran95-code
by Rajeev Thakur 15 Dec '14

15 Dec '14

I don't see the problem with the latest version of MPICH on my laptop. This is what I get: ---Info-print just BEFORE calling MPI_WIN_QUERY: idisplace_unit= -6666 ===Info-print just AFTER calling MPI_WIN_QUERY: idisplace_unit= 1 Rajeev On Dec 15, 2014, at 4:21 AM, Michael.Rachner(a)dlr.de wrote: > Dear Junchao, > > I attached a downsized Fortran95 program for testing the MPI-3 shared memory feature (MPI_WIN_ALLOCATE_SHARED, MPI_WIN_SHARED_QUERY). > You may add it to your MPICH test suite. > (The program is not secret, so I place it here for everybody, because it may serve also as an example, how to do the shared memory coding in a Ftn-code.) > > In that program I have inserted 2 ad-hoc prints, just before and just after the call of sbr MPI_WIN_SHARED_QUERY, > which print the value of the 4th-parameter DISP_UNIT (named idisplace_unit in the code) of that sbr . > > You can run the program by: > mpif90 sharedmemtest.f90 > mpiexec -np 2 -bind-to core -prepend-rank ./a.out > > On our LINUX cluster with MPICH-3.0.4 and Intel-14.0.1 the 2 print-stmts write this: > > [0] ---Info-print just BEFORE calling MPI_WIN_QUERY: idisplace_unit= -6666 ß -6666 is my arbitrary initialization value > [0] ===Info-print just AFTER calling MPI_WIN_QUERY: idisplace_unit= -6666 > [1] ---Info-print just BEFORE calling MPI_WIN_QUERY: idisplace_unit= -6666 > [1] ===Info-print just AFTER calling MPI_WIN_QUERY: idisplace_unit= -6666 > > You see, that sbr MPI_WIN_SHARED_QUERY does not overwrite the initialized value, but should do it. > I observed the same wrong behavior also in our Fortran95-CFD-code. > > I cannot easily install another MPICH-version. We have only MPICH-3.0.4 . So, do you find that behavior with that program also with the most recent MPICH-version? > > Greetings > Michael Rachner > > > > Von: Junchao Zhang [mailto:[email protected]] > Gesendet: Freitag, 12. Dezember 2014 20:50 > An: <discuss(a)mpich.org> > Betreff: Re: [mpich-discuss] Bug in MPI_WIN_SHARED_QUERY using MPICH-3.0.4 from Fortran95-code > > Michael, > I could not reproduce the problem with MPICH master. I checked MPICH's F90 binding of this routine. It looks good. There are C tests for this routine in MPICH test suite. They also ran fine. > Could you either upgrade your MPI to MPICH-3.1.3 or send me your test case? > Thanks. > > --Junchao Zhang > > On Fri, Dec 12, 2014 at 4:53 AM, <Michael.Rachner(a)dlr.de> wrote: > Dear developers of MPICH, > > I am running MPICH-3.0.4 with a Fortran95-code on a LINUX-cluster using the INTEL-14.0.1 Ftn-compiler. > In that code I employ the shared memory feature (using MPI_WIN_ALLOCATE_SHARED and MPI_WIN_SHARED_QUERY). > It works fine, but nevertheless I detected a little bug in MPI_WIN_SHARED_QUERY: > > MPI_WIN_SHARED_QUERY(WIN, RANK, SIZE, DISP_UNIT, BASEPTR, IERROR) > > The MPI-3.0 Standard document (chapter 11.2, on p. 410) prescribes that the 4th parameter DISP_UNIT is a result from the call of this sbr. > However, with MPICH no value is returned for DISP_UNIT. > > You can easily test that, by setting DISP_UNIT to a control number ( e.g. DISP_UNIT = -7777 ) just before the call of sbr MPI_WIN_SHARED_QUERY. > Just after that sbr-call the variable DISP_UNIT still contains that control number, but should not. > > Greetings > Michael Rachner > > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > <sharedmemtest.f90>_______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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