March 2017 - discuss - mailman3.cels.anl.gov

MPICH-3.1.4 with PAMID: Win_lock
by Sebastian Rinke 29 Mar '17

29 Mar '17

Dear all, I have some issue with MPI_Win_lock in MPICH-3.1.4 on Blue Gene/Q. Here is my example: Process 0: Win_lock(MPI_LOCK_SHARED, target=A) Win_lock(MPI_LOCK_SHARED, target=B) No matter what I use for A and B (given A != B), a process cannot acquire more than one lock at a time. To my understanding, it should be possible to acquire more than one lock. Can you confirm this issue? Thanks, Sebastian _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Some errors while compiling mpich2
by Balaji, Pavan 26 Mar '17

26 Mar '17

mpich2-1.5 is ancient. Can you download and use the latest version of mpich: http://www.mpich.org/downloads/ -- Pavan > On Mar 26, 2017, at 10:31 PM, 张祎晨 <zhangyichen2622(a)outlook.com> wrote: > > Hello, > I am a Ph.D. student in Peking University, China. I want to use mpich2-1.5, but there are some errors while compiling. The compiler I use is gcc 5.4.0. The attachments are c.txt and m.txt. Could you please tell me what’s wrong with it? Thank you. > > <c.txt><m.txt>_______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Some errors while compiling mpich2
by 张 �t晨 26 Mar '17

26 Mar '17

Hello, I am a Ph.D. student in Peking University, China. I want to use mpich2-1.5, but there are some errors while compiling. The compiler I use is gcc 5.4.0. The attachments are c.txt and m.txt. Could you please tell me what’s wrong with it? Thank you.

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Re: [mpich-discuss] Installation on Blue Gene/Q
by Sebastian Rinke 26 Mar '17

26 Mar '17

Problem solved. I missed to enable configure’s cross compilation mode which prevents it from running code on the build machine. Sebastian On 27 Mar 2017, at 00:25, Sebastian Rinke <rinke(a)cs.tu-darmstadt.de> wrote: > Dear all, > > We are trying to install MPICH 3.1.4 on Blue Gene/Q and > encounter problems during configure. > > Unfortunately, we are restricted to using GCC 4.8.{1, 3, 5}. > The error during configure is: > > […] > configure:53856: WARNING: Unable to determine the size of MPI_Offset > configure:53863: result: unknown > configure:54000: error: Unable to convert MPI_SIZEOF_OFFSET to a hex string. This is either because we are building on a very strange platform or there is a bug somewhere in configure. > > GCC 4.4.7 works, however, it lacks C++11 support which our code > relies on. > > Our goal is to use MPI_Rget with C++11 on Blue Gene/Q. > > Is there a way to make the configure work so that we can make > MPICH-3.1.4 compile? > > We would be very grateful for any help on this issue. > > Sebastian > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Installation on Blue Gene/Q
by Sebastian Rinke 26 Mar '17

26 Mar '17

Dear all, We are trying to install MPICH 3.1.4 on Blue Gene/Q and encounter problems during configure. Unfortunately, we are restricted to using GCC 4.8.{1, 3, 5}. The error during configure is: […] configure:53856: WARNING: Unable to determine the size of MPI_Offset configure:53863: result: unknown configure:54000: error: Unable to convert MPI_SIZEOF_OFFSET to a hex string. This is either because we are building on a very strange platform or there is a bug somewhere in configure. GCC 4.4.7 works, however, it lacks C++11 support which our code relies on. Our goal is to use MPI_Rget with C++11 on Blue Gene/Q. Is there a way to make the configure work so that we can make MPICH-3.1.4 compile? We would be very grateful for any help on this issue. Sebastian _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Installation on Blue Gene/Q
by Latham, Robert J. 23 Mar '17

23 Mar '17

On Thu, 2017-03-23 at 08:17 +0100, Marc-André Hermanns wrote: > Hi Pavan, > > yes, thank you. We will try the 3.3 pre-release. Paul Coffmann put together a little build-it-all environment: https://github.com/pkcoff/OFI-BGQ-BuildEnv You might be the first on-Argonne Blue Gene to try this out: I'm sure Paul would like to hear your experience. ==rob > > Cheers, > Marc-Andre > > On 23.03.2017 02:36, Balaji, Pavan wrote: > > Marc-Andre, > > > > We dropped support for the BG/Q pamid device in mpich- > > 3.2. However, in the mpich-3.3 series, we have brought back > > support for BG/Q through the CH4:OFI stack. It's experimental, but > > the performance so far is significantly better than the old pamid > > device. Can you try that instead? > > > > -- Pavan > > > > > On Mar 22, 2017, at 2:45 PM, Marc-André Hermanns <m.a.hermanns@fz > > > -juelich.de> wrote: > > > > > > Dear MPICH team, > > > > > > we are trying to install the latest MPICH 3.2 on our Blue Gene/Q > > > system, but fail with both XL and clang. > > > > > > A colleague forwarded the make error log from his try using XL: > > > > > > make[2]: Entering directory > > > `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' > > > CC src/mpi/attr/lib_libmpi_la-attr_delete.lo > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidi_thread.h", > > > line 64.9: 1506-236 (W) Macro name MPIU_THREAD_CS_ENTER has been > > > redefined. > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidi_thread.h", > > > line 64.9: 1506-358 (I) "MPIU_THREAD_CS_ENTER" is defined on line > > > 80 > > > of ./src/util/thread/mpiu_thread_multiple.h. > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidi_thread.h", > > > line 65.9: 1506-236 (W) Macro name MPIU_THREAD_CS_EXIT has been > > > redefined. > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidi_thread.h", > > > line 65.9: 1506-358 (I) "MPIU_THREAD_CS_EXIT" is defined on line > > > 81 of > > > ./src/util/thread/mpiu_thread_multiple.h. > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidi_thread.h", > > > line 66.9: 1506-236 (W) Macro name MPIU_THREAD_CS_YIELD has been > > > redefined. > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidi_thread.h", > > > line 66.9: 1506-358 (I) "MPIU_THREAD_CS_YIELD" is defined on line > > > 82 > > > of ./src/util/thread/mpiu_thread_multiple.h. > > > "./src/include/mpiimpl.h", line 1184.5: 1506-046 (S) Syntax > > > error. > > > "./src/include/mpiimpl.h", line 1481.5: 1506-046 (S) Syntax > > > error. > > > "./src/include/mpiimpl.h", line 1636.5: 1506-046 (S) Syntax > > > error. > > > "./src/include/mpiimpl.h", line 2785.5: 1506-343 (S) > > > Redeclaration of > > > MPID_Send differs from previous declaration on line 2760 of > > > "./src/include/mpiimpl.h". > > > "./src/include/mpiimpl.h", line 2785.5: 1506-377 (I) The type > > > "int" of > > > parameter 2 differs from the previous type "long". > > > "./src/include/mpiimpl.h", line 2884.5: 1506-343 (S) > > > Redeclaration of > > > MPID_Isend differs from previous declaration on line 2865 of > > > "./src/include/mpiimpl.h". > > > "./src/include/mpiimpl.h", line 2884.5: 1506-377 (I) The type > > > "int" of > > > parameter 2 differs from the previous type "long". > > > "./src/include/mpitimpl.h", line 245.5: 1506-046 (S) Syntax > > > error. > > > "./src/include/mpitimpl.h", line 900.40: 1506-022 (S) "total" is > > > not a > > > member of "struct {...}". > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/../src/mpid_request.h", > > > line 156.21: 1506-022 (S) "cc" is not a member of "struct > > > MPID_Request". > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/../src/mpid_request.h", > > > line 157.8: 1506-022 (S) "cc_ptr" is not a member of "struct > > > MPID_Request". > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/../src/mpid_request.h", > > > line 157.23: 1506-022 (S) "cc" is not a member of "struct > > > MPID_Request". > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/../src/mpid_request.h", > > > line 283.62: 1506-099 (S) Unexpected argument. > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/../src/mpid_request.h", > > > line 326.23: 1506-022 (S) "cc_ptr" is not a member of "struct > > > MPID_Request". > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/../src/mpid_request.h", > > > line 341.23: 1506-022 (S) "cc_ptr" is not a member of "struct > > > MPID_Request". > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidpost.h", > > > line 56.44: 1506-022 (S) "vcr" is not a member of "struct > > > MPID_Comm". > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidpost.h", > > > line 83.43: 1506-022 (S) "vcrt" is not a member of "struct > > > MPID_Comm". > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidpost.h", > > > line 84.37: 1506-022 (S) "vcrt" is not a member of "struct > > > MPID_Comm". > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidpost.h", > > > line 84.57: 1506-022 (S) "vcr" is not a member of "struct > > > MPID_Comm". > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidpost.h", > > > line 91.42: 1506-022 (S) "vcr" is not a member of "struct > > > MPID_Comm". > > > "/homeb/zam/scprod/mstephan/mpich3/mpich- > > > 3.2/src/mpid/pamid/include/mpidpost.h", > > > line 92.41: 1506-022 (S) "vcr" is not a member of "struct > > > MPID_Comm". > > > "src/mpi/attr/attr_delete.c", line 65.26: 1506-045 (S) Undeclared > > > identifier GLOBAL. > > > make[2]: *** [src/mpi/attr/lib_libmpi_la-attr_delete.lo] Error 1 > > > make[2]: Leaving directory > > > `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' > > > make[1]: *** [all-recursive] Error 1 > > > make[1]: Leaving directory > > > `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' > > > make: *** [all] Error 2 > > > > > > Is there something obvious that we missed? > > > > > > Cheers, > > > Marc-Andre > > > > > > -- > > > Marc-Andre Hermanns > > > Jülich Aachen Research Alliance, > > > High Performance Computing (JARA-HPC) > > > Jülich Supercomputing Centre (JSC) > > > > > > Wilhelm-Johnen-Str. > > > 52425 Jülich > > > Germany > > > > > > Phone: +49 2461 61 2509 | +49 241 80 24381 > > > Fax: +49 2461 80 6 99753 > > > www.jara.org/jara-hpc > > > email: m.a.hermanns(a)fz-juelich.de > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Installation on Blue Gene/Q
by Marc-André Hermanns 23 Mar '17

23 Mar '17

Hi Pavan, yes, thank you. We will try the 3.3 pre-release. Cheers, Marc-Andre On 23.03.2017 02:36, Balaji, Pavan wrote: > Marc-Andre, > > We dropped support for the BG/Q pamid device in mpich-3.2. However, in the mpich-3.3 series, we have brought back support for BG/Q through the CH4:OFI stack. It's experimental, but the performance so far is significantly better than the old pamid device. Can you try that instead? > > -- Pavan > >> On Mar 22, 2017, at 2:45 PM, Marc-André Hermanns <m.a.hermanns(a)fz-juelich.de> wrote: >> >> Dear MPICH team, >> >> we are trying to install the latest MPICH 3.2 on our Blue Gene/Q >> system, but fail with both XL and clang. >> >> A colleague forwarded the make error log from his try using XL: >> >> make[2]: Entering directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' >> CC src/mpi/attr/lib_libmpi_la-attr_delete.lo >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", >> line 64.9: 1506-236 (W) Macro name MPIU_THREAD_CS_ENTER has been >> redefined. >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", >> line 64.9: 1506-358 (I) "MPIU_THREAD_CS_ENTER" is defined on line 80 >> of ./src/util/thread/mpiu_thread_multiple.h. >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", >> line 65.9: 1506-236 (W) Macro name MPIU_THREAD_CS_EXIT has been redefined. >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", >> line 65.9: 1506-358 (I) "MPIU_THREAD_CS_EXIT" is defined on line 81 of >> ./src/util/thread/mpiu_thread_multiple.h. >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", >> line 66.9: 1506-236 (W) Macro name MPIU_THREAD_CS_YIELD has been >> redefined. >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", >> line 66.9: 1506-358 (I) "MPIU_THREAD_CS_YIELD" is defined on line 82 >> of ./src/util/thread/mpiu_thread_multiple.h. >> "./src/include/mpiimpl.h", line 1184.5: 1506-046 (S) Syntax error. >> "./src/include/mpiimpl.h", line 1481.5: 1506-046 (S) Syntax error. >> "./src/include/mpiimpl.h", line 1636.5: 1506-046 (S) Syntax error. >> "./src/include/mpiimpl.h", line 2785.5: 1506-343 (S) Redeclaration of >> MPID_Send differs from previous declaration on line 2760 of >> "./src/include/mpiimpl.h". >> "./src/include/mpiimpl.h", line 2785.5: 1506-377 (I) The type "int" of >> parameter 2 differs from the previous type "long". >> "./src/include/mpiimpl.h", line 2884.5: 1506-343 (S) Redeclaration of >> MPID_Isend differs from previous declaration on line 2865 of >> "./src/include/mpiimpl.h". >> "./src/include/mpiimpl.h", line 2884.5: 1506-377 (I) The type "int" of >> parameter 2 differs from the previous type "long". >> "./src/include/mpitimpl.h", line 245.5: 1506-046 (S) Syntax error. >> "./src/include/mpitimpl.h", line 900.40: 1506-022 (S) "total" is not a >> member of "struct {...}". >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", >> line 156.21: 1506-022 (S) "cc" is not a member of "struct MPID_Request". >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", >> line 157.8: 1506-022 (S) "cc_ptr" is not a member of "struct >> MPID_Request". >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", >> line 157.23: 1506-022 (S) "cc" is not a member of "struct MPID_Request". >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", >> line 283.62: 1506-099 (S) Unexpected argument. >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", >> line 326.23: 1506-022 (S) "cc_ptr" is not a member of "struct >> MPID_Request". >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", >> line 341.23: 1506-022 (S) "cc_ptr" is not a member of "struct >> MPID_Request". >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", >> line 56.44: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", >> line 83.43: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm". >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", >> line 84.37: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm". >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", >> line 84.57: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", >> line 91.42: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". >> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", >> line 92.41: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". >> "src/mpi/attr/attr_delete.c", line 65.26: 1506-045 (S) Undeclared >> identifier GLOBAL. >> make[2]: *** [src/mpi/attr/lib_libmpi_la-attr_delete.lo] Error 1 >> make[2]: Leaving directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' >> make[1]: *** [all-recursive] Error 1 >> make[1]: Leaving directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' >> make: *** [all] Error 2 >> >> Is there something obvious that we missed? >> >> Cheers, >> Marc-Andre >> >> -- >> Marc-Andre Hermanns >> Jülich Aachen Research Alliance, >> High Performance Computing (JARA-HPC) >> Jülich Supercomputing Centre (JSC) >> >> Wilhelm-Johnen-Str. >> 52425 Jülich >> Germany >> >> Phone: +49 2461 61 2509 | +49 241 80 24381 >> Fax: +49 2461 80 6 99753 >> www.jara.org/jara-hpc >> email: m.a.hermanns(a)fz-juelich.de >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > -- Marc-Andre Hermanns Jülich Aachen Research Alliance, High Performance Computing (JARA-HPC) Jülich Supercomputing Centre (JSC) Wilhelm-Johnen-Str. 52425 Jülich Germany Phone: +49 2461 61 2509 | +49 241 80 24381 Fax: +49 2461 80 6 99753 www.jara.org/jara-hpc email: m.a.hermanns(a)fz-juelich.de _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Installation on Blue Gene/Q
by Balaji, Pavan 22 Mar '17

22 Mar '17

Marc-Andre, We dropped support for the BG/Q pamid device in mpich-3.2. However, in the mpich-3.3 series, we have brought back support for BG/Q through the CH4:OFI stack. It's experimental, but the performance so far is significantly better than the old pamid device. Can you try that instead? -- Pavan > On Mar 22, 2017, at 2:45 PM, Marc-André Hermanns <m.a.hermanns(a)fz-juelich.de> wrote: > > Dear MPICH team, > > we are trying to install the latest MPICH 3.2 on our Blue Gene/Q > system, but fail with both XL and clang. > > A colleague forwarded the make error log from his try using XL: > > make[2]: Entering directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' > CC src/mpi/attr/lib_libmpi_la-attr_delete.lo > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", > line 64.9: 1506-236 (W) Macro name MPIU_THREAD_CS_ENTER has been > redefined. > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", > line 64.9: 1506-358 (I) "MPIU_THREAD_CS_ENTER" is defined on line 80 > of ./src/util/thread/mpiu_thread_multiple.h. > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", > line 65.9: 1506-236 (W) Macro name MPIU_THREAD_CS_EXIT has been redefined. > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", > line 65.9: 1506-358 (I) "MPIU_THREAD_CS_EXIT" is defined on line 81 of > ./src/util/thread/mpiu_thread_multiple.h. > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", > line 66.9: 1506-236 (W) Macro name MPIU_THREAD_CS_YIELD has been > redefined. > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", > line 66.9: 1506-358 (I) "MPIU_THREAD_CS_YIELD" is defined on line 82 > of ./src/util/thread/mpiu_thread_multiple.h. > "./src/include/mpiimpl.h", line 1184.5: 1506-046 (S) Syntax error. > "./src/include/mpiimpl.h", line 1481.5: 1506-046 (S) Syntax error. > "./src/include/mpiimpl.h", line 1636.5: 1506-046 (S) Syntax error. > "./src/include/mpiimpl.h", line 2785.5: 1506-343 (S) Redeclaration of > MPID_Send differs from previous declaration on line 2760 of > "./src/include/mpiimpl.h". > "./src/include/mpiimpl.h", line 2785.5: 1506-377 (I) The type "int" of > parameter 2 differs from the previous type "long". > "./src/include/mpiimpl.h", line 2884.5: 1506-343 (S) Redeclaration of > MPID_Isend differs from previous declaration on line 2865 of > "./src/include/mpiimpl.h". > "./src/include/mpiimpl.h", line 2884.5: 1506-377 (I) The type "int" of > parameter 2 differs from the previous type "long". > "./src/include/mpitimpl.h", line 245.5: 1506-046 (S) Syntax error. > "./src/include/mpitimpl.h", line 900.40: 1506-022 (S) "total" is not a > member of "struct {...}". > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", > line 156.21: 1506-022 (S) "cc" is not a member of "struct MPID_Request". > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", > line 157.8: 1506-022 (S) "cc_ptr" is not a member of "struct > MPID_Request". > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", > line 157.23: 1506-022 (S) "cc" is not a member of "struct MPID_Request". > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", > line 283.62: 1506-099 (S) Unexpected argument. > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", > line 326.23: 1506-022 (S) "cc_ptr" is not a member of "struct > MPID_Request". > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", > line 341.23: 1506-022 (S) "cc_ptr" is not a member of "struct > MPID_Request". > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", > line 56.44: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", > line 83.43: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm". > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", > line 84.37: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm". > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", > line 84.57: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", > line 91.42: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". > "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", > line 92.41: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". > "src/mpi/attr/attr_delete.c", line 65.26: 1506-045 (S) Undeclared > identifier GLOBAL. > make[2]: *** [src/mpi/attr/lib_libmpi_la-attr_delete.lo] Error 1 > make[2]: Leaving directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' > make: *** [all] Error 2 > > Is there something obvious that we missed? > > Cheers, > Marc-Andre > > -- > Marc-Andre Hermanns > Jülich Aachen Research Alliance, > High Performance Computing (JARA-HPC) > Jülich Supercomputing Centre (JSC) > > Wilhelm-Johnen-Str. > 52425 Jülich > Germany > > Phone: +49 2461 61 2509 | +49 241 80 24381 > Fax: +49 2461 80 6 99753 > www.jara.org/jara-hpc > email: m.a.hermanns(a)fz-juelich.de > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Installation on Blue Gene/Q
by Marc-André Hermanns 22 Mar '17

22 Mar '17

Dear MPICH team, we are trying to install the latest MPICH 3.2 on our Blue Gene/Q system, but fail with both XL and clang. A colleague forwarded the make error log from his try using XL: make[2]: Entering directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' CC src/mpi/attr/lib_libmpi_la-attr_delete.lo "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", line 64.9: 1506-236 (W) Macro name MPIU_THREAD_CS_ENTER has been redefined. "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", line 64.9: 1506-358 (I) "MPIU_THREAD_CS_ENTER" is defined on line 80 of ./src/util/thread/mpiu_thread_multiple.h. "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", line 65.9: 1506-236 (W) Macro name MPIU_THREAD_CS_EXIT has been redefined. "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", line 65.9: 1506-358 (I) "MPIU_THREAD_CS_EXIT" is defined on line 81 of ./src/util/thread/mpiu_thread_multiple.h. "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", line 66.9: 1506-236 (W) Macro name MPIU_THREAD_CS_YIELD has been redefined. "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h", line 66.9: 1506-358 (I) "MPIU_THREAD_CS_YIELD" is defined on line 82 of ./src/util/thread/mpiu_thread_multiple.h. "./src/include/mpiimpl.h", line 1184.5: 1506-046 (S) Syntax error. "./src/include/mpiimpl.h", line 1481.5: 1506-046 (S) Syntax error. "./src/include/mpiimpl.h", line 1636.5: 1506-046 (S) Syntax error. "./src/include/mpiimpl.h", line 2785.5: 1506-343 (S) Redeclaration of MPID_Send differs from previous declaration on line 2760 of "./src/include/mpiimpl.h". "./src/include/mpiimpl.h", line 2785.5: 1506-377 (I) The type "int" of parameter 2 differs from the previous type "long". "./src/include/mpiimpl.h", line 2884.5: 1506-343 (S) Redeclaration of MPID_Isend differs from previous declaration on line 2865 of "./src/include/mpiimpl.h". "./src/include/mpiimpl.h", line 2884.5: 1506-377 (I) The type "int" of parameter 2 differs from the previous type "long". "./src/include/mpitimpl.h", line 245.5: 1506-046 (S) Syntax error. "./src/include/mpitimpl.h", line 900.40: 1506-022 (S) "total" is not a member of "struct {...}". "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", line 156.21: 1506-022 (S) "cc" is not a member of "struct MPID_Request". "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", line 157.8: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request". "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", line 157.23: 1506-022 (S) "cc" is not a member of "struct MPID_Request". "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", line 283.62: 1506-099 (S) Unexpected argument. "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", line 326.23: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request". "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h", line 341.23: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request". "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", line 56.44: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", line 83.43: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm". "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", line 84.37: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm". "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", line 84.57: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", line 91.42: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h", line 92.41: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". "src/mpi/attr/attr_delete.c", line 65.26: 1506-045 (S) Undeclared identifier GLOBAL. make[2]: *** [src/mpi/attr/lib_libmpi_la-attr_delete.lo] Error 1 make[2]: Leaving directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2' make: *** [all] Error 2 Is there something obvious that we missed? Cheers, Marc-Andre -- Marc-Andre Hermanns Jülich Aachen Research Alliance, High Performance Computing (JARA-HPC) Jülich Supercomputing Centre (JSC) Wilhelm-Johnen-Str. 52425 Jülich Germany Phone: +49 2461 61 2509 | +49 241 80 24381 Fax: +49 2461 80 6 99753 www.jara.org/jara-hpc email: m.a.hermanns(a)fz-juelich.de _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] MCS lock and MPI RMA problem
by Balaji, Pavan 14 Mar '17

14 Mar '17

> On Mar 14, 2017, at 4:46 PM, Balaji, Pavan <balaji(a)anl.gov> wrote: > Thanks. That's a bug in your code. In mcs-lock-fop.c:92, before you do an accumulate to notify the next rank, you need to reset your lmem[nextRank] back to -1. Otherwise, in the next iteration, you'll think that the value is set even if it is not. You can either do it using a local store followed by an MPI_WIN_SYNC or using MPI_Put or MPI_Accumulate. After that fix your program seems to work correctly. A small clarification: I think you noticed the reset issue in your previous email as well, but setting it before acquire would be incorrect because of the reason I already pointed out. Setting it before the release completes, however, would be correct because it's within the epoch and does not conflict with the MODE_NOCHECK hint (you are algorithmically guaranteeing that there's no conflicting access to it). An additional small possible improvement: you can move the lock_all to the init function instead of doing it for each lock acquisition. That way you can reduce the number of locks. With the MODE_NOCHECK hint the lock_all is essentially a no-op with respect to lock acquisition, but it still does additional memory barriers which can be avoided. -- Pavan _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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