September 2017 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] Missing Nemesis ib
by Jason Collins 19 Sep '17

19 Sep '17

Thank you very much. I have compiled with "CH3:nemesis:mxm". The compilation was successful. Now I have a new problem. I tested the test "./icp" and get the following error. # mpiexec -f hosts -n 4 ./cpi [1505822776.546898] [compute1:16212:0] sys.c:744 MXM WARN Conflicting CPU frequencies detected, using: 3459.84 [1505822776.546898] [compute1:16213:0] sys.c:744 MXM WARN Conflicting CPU frequencies detected, using: 3459.84 [1505822776.546951] [compute1:16216:0] sys.c:744 MXM WARN Conflicting CPU frequencies detected, using: 3459.84 [1505822776.547039] [compute1:16214:0] sys.c:744 MXM WARN Conflicting CPU frequencies detected, using: 3459.84 [1505822776.561357] [compute1:16214:0] ib_dev.c:533 MXM WARN failed call to ibv_exp_use_priv_env(): Function not implemented [1505822776.561371] [compute1:16214:0] ib_dev.c:544 MXM ERROR ibv_query_device() returned 38: Function not implemented [1505822776.561386] [compute1:16218:0] ib_dev.c:533 MXM WARN failed call to ibv_exp_use_priv_env(): Function not implemented [1505822776.561396] [compute1:16218:0] ib_dev.c:544 MXM ERROR ibv_query_device() returned 38: Function not implemented [1505822776.561426] [compute1:16225:0] ib_dev.c:533 MXM WARN failed call to ibv_exp_use_priv_env(): Function not implemented [1505822776.561442] [compute1:16225:0] ib_dev.c:544 MXM ERROR ibv_query_device() returned 38: Function not implemented Fatal error in MPI_Init: Other MPI error, error stack: MPIR_Init_thread(474).........: MPID_Init(190)................: channel initialization failed MPIDI_CH3_Init(89)............: MPID_nem_init(320)............: MPID_nem_mxm_init(158)........: MPID_nem_mxm_get_ordering(464): mxm_init failed (Input/output error) El vie., 15 sept. 2017 a las 16:01, Halim Amer (<aamer(a)anl.gov>) escribió: > The "nemesis:ib" netmod does not exist anymore. Try "ch3:nemesis:mxm" > with a dependency on Mellanox's MXM library (can be obtained from the > HPCX package at www.mellanox.com/products/hpcx) or "ch3:nemesis:ofi" > with a dependency on libfabric (which would be built to support the IB > or MXM providers; see https://ofiwg.github.io/libfabric/) > > Halim > www.mcs.anl.gov/~aamer > > On 9/15/17 4:20 AM, Jason Collins wrote: > > Hello everyone. > > > > Recently, I downloaded Mpich-3.2 > > > > I want to configure with support for InfiniBand. I've put the following > > command: > > > > # ./configure --prefix=/my/path --with-device=ch3:nemesis:ib > > > > And I get the following error: > > > > configure: error: Network module ib is unknown > > "./src/mpid/ch3/channels/nemesis/netmod/ib" > > > > When I check the path I confirm that in the folder "netmod" does not > > exist the folder "ib". How can this be solved? > > > > Many thanks. > > < > https://audio1.spanishdict.com/audio?lang=en&text=when-i-check-the-path-i-c… > > > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] mpich-master: couldn't build libmpicxx.la with Sun C on Linux
by Siegmar Gross 18 Sep '17

18 Sep '17

Hi, I still get the error that I reported last month. Do you know if and when you can fix the problem? Thank you very much your answer in advance. Kind regards Siegmar On 08/24/17 07:53, Siegmar Gross wrote: > Hi Halim, > > Am 23.08.2017 um 22:12 schrieb Halim Amer: >> Hi Siegmar, >> >> I can see some workarounds, for example, by passing -std=sun03, but I don't >> understand why the linker is passing -library=Cstd -library=Crun. >> >> My guess is that CC does not use the GNU linker. We had issues with the Sun >> Studio linker few years ago, so we worked-around the issue by sym-liking the >> Sun Studio linker to GNU ld. >> >> Before we go that route, could you add -v to the linker line? I.e.: >> >> CC -G -hlibmpicxx.so.0 -o lib/.libs/libmpicxx.so.0.0.0 >> src/binding/cxx/.libs/initcxx.o >> -R/export2/src/mpich-master/mpich-master_2017-08-23_Linux.x86_64.64_cc/lib/.libs >> -R/usr/local/mpich-master_64_cc/lib64 -R/usr/lib64 -L/usr/lib64 >> lib/.libs/libmpi.so -lunwind -lpthread -lrt -library=Cstd -library=Crun -m64 >> -O2 -m64 -v >> >> This should show which linker is being used. Meanwhile, you can try the above >> workarounds as well. > > > loki mpich-master_2017-08-23_Linux.x86_64.64_cc 125 CC -G -hlibmpicxx.so.0 -o > lib/.libs/libmpicxx.so.0.0.0 src/binding/cxx/.libs/initcxx.o > -R/export2/src/mpich-master/mpich-master_2017-08-23_Linux.x86_64.64_cc/lib/.libs > -R/usr/local/mpich-master_64_cc/lib64 -R/usr/lib64 -L/usr/lib64 > lib/.libs/libmpi.so -lunwind -lpthread -lrt -library=Cstd -library=Crun -m64 -O2 > -m64 -v > CC: -library=Crun cannot be used with -std=c++03. To use this library you need > to switch to -std=sun03 > CC: -library=Cstd cannot be used with -std=c++03. To use this library you need > to switch to -std=sun03 > ### command line files and options (expanded): > ### -G -hlibmpicxx.so.0 -olib/.libs/libmpicxx.so.0.0.0 > src/binding/cxx/.libs/initcxx.o > -R/export2/src/mpich-master/mpich-master_2017-08-23_Linux.x86_64.64_cc/lib/.libs > -R/usr/local/mpich-master_64_cc/lib64 -R/usr/lib64 -L/usr/lib64 > lib/.libs/libmpi.so -lunwind -lpthread -lrt -library=Cstd,Crun -O2 -m64 -v > > > loki mpich-master_2017-08-23_Linux.x86_64.64_cc 126 echo $PATH > /usr/local/valgrind-3.12.0/bin:/usr/local/eclipse-4.5.1:/usr/local/netbeans-8.1/bin:/usr/local/jdk1.8.0_66/bin:/usr/local/jdk1.8.0_66/db/bin:/usr/local/llvm-trunk/bin:/usr/local/pgi/linux86-64/16.10/bin:/usr/local/intel_xe_2018_beta/compilers_and_libraries_2018.0.082/linux/bin/intel64:/usr/local/intel_xe_2018_beta/compilers_and_libraries_2018.0.082/linux/mpi/intel64/bin:/opt/solstudio12.6/bin:/usr/local/gcc-7.1.0/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/cuda-8.0/bin:/usr/local/intel/opencl-1.2-sdk-6.3.0.1904/bin:/usr/local/hwloc-1.11.5/bin:/usr/local/haskell/ghc-8.0.1-x86_64/bin:/usr/local/swipl-7.2.3/bin/x86_64-linux:/home/fd1026/Linux/x86_64/bin:.:/usr/sbin > > loki mpich-master_2017-08-23_Linux.x86_64.64_cc 127 > > /opt/solstudio12.6/bin is specified before /usr/local/gcc-7.1.0/bin > in PATH and the directories for pgcc and icc are even specified > before Sun C. Would it be helpful to build lld from the llvm project? > Unfortunately, I wasn't able to build it in the past. I have no > access to my machine before September 4th, so that I cannot try > anything in the next days. Perhaps I will not even read emails. > > Kind regards and thank you very much for your help once more > > Siegmar > > >> >> Halim >> www.mcs.anl.gov/~aamer >> >> On 8/23/17 3:44 AM, Siegmar Gross wrote: >>> Hi Halim, >>> >>> >>>> Thanks for the details. I don't see anything unusual from your logs. Can you >>>> paste here the output of "make V=1" at the step: >>>> "CXXLD lib/libmpicxx.la"? >>> >>> >>> loki mpich-master_2017-08-23_Linux.x86_64.64_cc 122 tail -15 >>> log.make.Linux.x86_64.64_cc >>> "./src/include/mpichconf.h", line 1132: Warning (Anachronism): Attempt to >>> redefine __restrict__ without using #undef. >>> 1 Warning(s) detected. >>> libtool: compile: CC -DHAVE_CONFIG_H -I. -I../mpich -I./src/include >>> -I../mpich/src/include -I../mpich/src/mpi/datatype >>> -I../mpich/src/mpi/datatype -I../mpich/src/mpi/spawn >>> -I../mpich/src/util/logging/common -I../mpich/src/util/mem >>> -I../mpich/src/util/nodemap -I../mpich/src/util/wrappers >>> -I./src/util/wrappers -I./src/binding/cxx -I../mpich/src/mpid/include >>> -I../mpich/src/mpid/ch3/include -I./src/mpid/ch3/include >>> -I../mpich/src/mpid/ch3/channels/nemesis/include >>> -I./src/mpid/ch3/channels/nemesis/include >>> -I../mpich/src/mpid/ch3/channels/nemesis/utils/monitor >>> -I../mpich/src/mpid/common/sched -I../mpich/src/mpid/common/thread >>> -I../mpich/src/mpid/common/timers -I../mpich/src/mpid/common/shm >>> -I../mpich/src/pmi/simple -I../mpich/src/pmi/include >>> -I/export2/src/mpich-master/mpich-master_2017-08-23_Linux.x86_64.64_cc/src/mpl/include >>> -I/export2/src/mpich-master/mpich/src/mpl/include >>> -I/export2/src/mpich-master/mpich/src/openpa/src >>> -I/export2/src/mpich-master/mpich-master_2017-08-23_Linux.x86_64.64_cc/src/openpa/src >>> -D_REENTRANT >>> -I/export2/src/mpich-master/mpich-master_2017-08-23_Linux.x86_64.64_cc/src/mpi/romio/include >>> -m64 -O2 -c ../mpich/src/binding/cxx/initcxx.cxx -o src/binding/cxx/initcxx.o >>> >/dev/null 2>&1 >>> /bin/sh ./libtool --tag=CXX --mode=link CC -m64 -O2 -version-info 0:0:0 >>> -m64 -L/usr/lib64 -R/usr/lib64 -o lib/libmpicxx.la -rpath >>> /usr/local/mpich-master_64_cc/lib64 src/binding/cxx/initcxx.lo lib/libmpi.la >>> libtool: link: CC -G -hlibmpicxx.so.0 -o lib/.libs/libmpicxx.so.0.0.0 >>> src/binding/cxx/.libs/initcxx.o >>> -R/export2/src/mpich-master/mpich-master_2017-08-23_Linux.x86_64.64_cc/lib/.libs >>> -R/usr/local/mpich-master_64_cc/lib64 -R/usr/lib64 -L/usr/lib64 >>> lib/.libs/libmpi.so -lunwind -lpthread -lrt -library=Cstd -library=Crun >>> -m64 -O2 -m64 >>> CC: -library=Crun cannot be used with -std=c++03. To use this library you >>> need to switch to -std=sun03 >>> CC: -library=Cstd cannot be used with -std=c++03. To use this library you >>> need to switch to -std=sun03 >>> Makefile:9429: recipe for target 'lib/libmpicxx.la' failed >>> make[2]: *** [lib/libmpicxx.la] Error 1 >>> make[2]: Leaving directory >>> '/export2/src/mpich-master/mpich-master_2017-08-23_Linux.x86_64.64_cc' >>> Makefile:34562: recipe for target 'all-recursive' failed >>> make[1]: *** [all-recursive] Error 1 >>> make[1]: Leaving directory >>> '/export2/src/mpich-master/mpich-master_2017-08-23_Linux.x86_64.64_cc' >>> Makefile:9242: recipe for target 'all' failed >>> make: *** [all] Error 2 >>> loki mpich-master_2017-08-23_Linux.x86_64.64_cc 123 >>> >>> >>> Hopefully, that helps. >>> >>> >>> Kind regards >>> >>> Siegmar >>> >>> >>>> We currently working on upgrading our Sun Studio compilers. I will keep you >>>> posted once I rebuild in the new environment. >>>> >>>> Best, >>>> >>>> Halim >>>> www.mcs.anl.gov/~aamer >>>> >>>> On 8/22/17 7:01 AM, Siegmar Gross wrote: >>>>> Hi Halim, >>>>> >>>>> I've attached the config and log files. Hopefully, you will find a solution >>>>> for >>>>> the problem. In the past (mid February 2017) I was able to build the last >>>>> nightly snapshot from >>>>> http://www.mpich.org/static/downloads/nightly/master/mpich/ with Sun C 5.14. >>>>> Unfortunately, you don't provide nightly snapshots any longer. Min told >>>>> me some days ago where I can find your master branch. I did the following >>>>> things (SYSTEM_ENV: Linux, MACHINE_ENV: x86_64). >>>>> >>>>> git clone https://github.com/pmodels/mpich.git >>>>> cd mpich >>>>> autogen.sh >>>>> cd .. >>>>> >>>>> mkdir mpich-master_`date -I'date'`_${SYSTEM_ENV}.${MACHINE_ENV}.64_gcc >>>>> cd mpich-master_`date -I'date'`_${SYSTEM_ENV}.${MACHINE_ENV}.64_gcc >>>>> >>>>> ../mpich/configure \ >>>>> --prefix=/usr/local/mpich-master_64_gcc \ >>>>> --libdir=/usr/local/mpich-master_64_gcc/lib64 \ >>>>> --includedir=/usr/local/mpich-master_64_gcc/include64 \ >>>>> CC="gcc" CXX="g++" F77="gfortran" FC="gfortran" \ >>>>> CFLAGS="-m64" CXXFLAGS="-m64" FFLAGS="-m64" FCFLAGS="-m64" \ >>>>> LDFLAGS="-m64" \ >>>>> --enable-fortran=yes --enable-cxx --enable-romio \ >>>>> --enable-debuginfo --enable-smpcoll \ >>>>> --enable-threads=multiple --with-thread-package=posix \ >>>>> --enable-shared \ >>>>> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc >>>>> >>>>> make |& tee log.make.$SYSTEM_ENV.$MACHINE_ENV.64_gcc >>>>> rm -r /usr/local/mpich-master_64_gcc.old >>>>> mv /usr/local/mpich-master_64_gcc /usr/local/mpich-master_64_gcc.old >>>>> make install |& tee log.make-install.$SYSTEM_ENV.$MACHINE_ENV.64_gcc >>>>> make check |& tee log.make-check.$SYSTEM_ENV.$MACHINE_ENV.64_gcc >>>>> >>>>> >>>>> Kind regards >>>>> >>>>> Siegmar >>>>> >>>>> >>>>> >>>>> On 08/21/17 18:17, Halim Amer wrote: >>>>>> Hi Siegmar, >>>>>> >>>>>> I could not reproduce the error you are seeing with Sun C 5.13. I could >>>>>> try to use the 5.15, but meanwhile, there is some information I would like >>>>>> to know. >>>>>> >>>>>> > CC: -library=Crun cannot be used with -std=c++03 >>>>>> >>>>>> I don't understand how -std=c++03 got passed with the below configure line >>>>>> you gave us. Are you sure the error message corresponds to the configure >>>>>> setup below? >>>>>> >>>>>> Can you attach the output and log of the configure step and the output of >>>>>> make? >>>>>> >>>>>> Thanks, >>>>>> >>>>>> Halim >>>>>> www.mcs.anl.gov/~aamer >>>>>> >>>>>> On 8/21/17 7:34 AM, Siegmar Gross wrote: >>>>>>> Hi, >>>>>>> >>>>>>> I tried to install mpich-master on my "SUSE Linux Enterprise Server 12.2 >>>>>>> (x86_64)" with Sun C 5.15 (Oracle Developer Studio 12.6) and gcc-7.1.0. >>>>>>> Unfortunately, I couldn't build it with Sun C due to the following error. >>>>>>> >>>>>>> loki mpich-master_2017-08-20_Linux.x86_64.64_cc 276 tail -18 >>>>>>> log.make.Linux.x86_64.64_cc >>>>>>> "../mpich/src/include/mpir_handlemem.h", line 61: warning: null >>>>>>> dimension: indirect >>>>>>> "../mpich/src/include/mpir_handlemem.h", line 122: warning: null >>>>>>> dimension: indirect >>>>>>> CCLD src/mpi/debugger/libdbginitdummy.la >>>>>>> GEN lib/libmpi.la >>>>>>> CXX src/binding/cxx/initcxx.lo >>>>>>> "./src/include/mpichconf.h", line 1132: Warning (Anachronism): Attempt to >>>>>>> redefine __restrict__ without using #undef. >>>>>>> 1 Warning(s) detected. >>>>>>> CXXLD lib/libmpicxx.la >>>>>>> CC: -library=Crun cannot be used with -std=c++03. To use this library you >>>>>>> need to switch to -std=sun03 >>>>>>> CC: -library=Cstd cannot be used with -std=c++03. To use this library you >>>>>>> need to switch to -std=sun03 >>>>>>> Makefile:9429: recipe for target 'lib/libmpicxx.la' failed >>>>>>> make[2]: *** [lib/libmpicxx.la] Error 1 >>>>>>> make[2]: Leaving directory >>>>>>> '/export2/src/mpich-master/mpich-master_2017-08-20_Linux.x86_64.64_cc' >>>>>>> Makefile:34562: recipe for target 'all-recursive' failed >>>>>>> make[1]: *** [all-recursive] Error 1 >>>>>>> make[1]: Leaving directory >>>>>>> '/export2/src/mpich-master/mpich-master_2017-08-20_Linux.x86_64.64_cc' >>>>>>> Makefile:9242: recipe for target 'all' failed >>>>>>> make: *** [all] Error 2 >>>>>>> loki mpich-master_2017-08-20_Linux.x86_64.64_cc 277 >>>>>>> >>>>>>> >>>>>>> I used the following command to configure MPICH. >>>>>>> >>>>>>> ../mpich/configure \ >>>>>>> --prefix=/usr/local/mpich-master_64_cc \ >>>>>>> --libdir=/usr/local/mpich-master_64_cc/lib64 \ >>>>>>> --includedir=/usr/local/mpich-master_64_cc/include64 \ >>>>>>> CC="cc" CXX="CC" F77="f77" FC="f95" \ >>>>>>> CFLAGS="-m64" CXXFLAGS="-m64" FFLAGS="-m64" FCFLAGS="-m64" \ >>>>>>> LDFLAGS="-m64 -L/usr/lib64 -R/usr/lib64" \ >>>>>>> --enable-fortran=ye --enable-cxx --enable-romio \ >>>>>>> --enable-debuginfo --enable-smpcoll \ >>>>>>> --enable-threads=multiple --with-thread-package=posix \ >>>>>>> --enable-shared \ >>>>>>> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_cc >>>>>>> >>>>>>> >>>>>>> Building MPICH caused the following warning with gcc. >>>>>>> >>>>>>> loki mpich-master_2017-08-20_Linux.x86_64.64_gcc 267 grep -i warning >>>>>>> log.make.Linux.x86_64.64_gcc | sort | uniq >>>>>>> ../mpich/src/include/mpir_mem.h:144:11: warning: argument 1 value >>>>>>> '18446744073709551612' exceeds maximum object size 9223372036854775807 >>>>>>> [-Walloc-size-larger-than=] >>>>>>> loki mpich-master_2017-08-20_Linux.x86_64.64_gcc 268 >>>>>>> >>>>>>> >>>>>>> >>>>>>> Building MPICH caused the following warnings with cc. >>>>>>> >>>>>>> loki mpich-master_2017-08-20_Linux.x86_64.64_cc 270 grep -i warning >>>>>>> log.make.Linux.x86_64.64_cc | sort | uniq >>>>>>> "../../../../../../../../../mpich/src/pm/hydra/tools/topo/hwloc/hwloc/src/topology-custom.c", >>>>>>> line 88: warning: initializer will be sign-extended: -1 >>>>>>> "../../../../../../../../../mpich/src/pm/hydra/tools/topo/hwloc/hwloc/src/topology-linux.c", >>>>>>> line 2727: warning: initializer will be sign-extended: -1 >>>>>>> "../../../../../../../../../mpich/src/pm/hydra/tools/topo/hwloc/hwloc/src/topology-synthetic.c", >>>>>>> line 851: warning: initializer will be sign-extended: -1 >>>>>>> "../../../../../../../../../mpich/src/pm/hydra/tools/topo/hwloc/hwloc/src/topology-x86.c", >>>>>>> line 122: warning: initializer will be sign-extended: -1 >>>>>>> "../../../../../../../../../mpich/src/pm/hydra/tools/topo/hwloc/hwloc/src/topology-xml.c", >>>>>>> line 1783: warning: initializer will be sign-extended: -1 >>>>>>> "../../../../mpich/src/mpi/romio/adio/common/ad_fstype.c", line 428: >>>>>>> warning: statement not reached >>>>>>> "../../../../mpich/src/mpi/romio/adio/common/ad_threaded_io.c", line 31: >>>>>>> warning: statement not reached >>>>>>> "../../../../mpich/src/openpa/src/primitives/opa_gcc_intel_32_64_ops.h", >>>>>>> line 103: warning: parameter in inline asm statement unused: %1 >>>>>>> "../../../../mpich/src/openpa/src/primitives/opa_gcc_intel_32_64_ops.h", >>>>>>> line 111: warning: parameter in inline asm statement unused: %1 >>>>>>> "../../../../mpich/src/openpa/src/primitives/opa_gcc_intel_32_64_ops.h", >>>>>>> line 121: warning: parameter in inline asm statement unused: %2 >>>>>>> "../../../../mpich/src/openpa/src/primitives/opa_gcc_intel_32_64_ops.h", >>>>>>> line 129: warning: parameter in inline asm statement unused: %3 >>>>>>> "../../../../mpich/src/openpa/src/primitives/opa_gcc_intel_32_64_ops.h", >>>>>>> line 142: warning: parameter in inline asm statement unused: %1 >>>>>>> "../../../../mpich/src/openpa/src/primitives/opa_gcc_intel_32_64_ops.h", >>>>>>> line 151: warning: parameter in inline asm statement unused: %1 >>>>>>> "../../../../mpich/src/openpa/src/primitives/opa_gcc_intel_32_64_ops.h", >>>>>>> line 159: warning: parameter in inline asm statement unused: %3 >>>>>>> "../../../../mpich/src/openpa/src/primitives/opa_gcc_intel_32_64_ops.h", >>>>>>> line 167: warning: parameter in inline asm statement unused: %3 >>>>>>> "../../../../mpich/src/openpa/src/primitives/opa_gcc_intel_32_64_ops.h", >>>>>>> line 95: warning: parameter in inline asm statement unused: %2 >>>>>>> "../../../../mpich/src/pm/hydra/pm/pmiserv/pmiserv_pmi_v1.c", line 796: >>>>>>> warning: statement not reached >>>>>>> "../mpich/src/include/mpir_handlemem.h", line 122: warning: null >>>>>>> dimension: indirect >>>>>>> "../mpich/src/include/mpir_handlemem.h", line 61: warning: null >>>>>>> dimension: indirect >>>>>>> "../mpich/src/mpi/datatype/dataloop/segment.c", line 658: warning: >>>>>>> statement not reached >>>>>>> "../mpich/src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_init.c", line 194: >>>>>>> warning: assignment type mismatch: >>>>>>> "../mpich/src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_init.c", line 195: >>>>>>> warning: operands have incompatible pointer types: op "==" >>>>>>> "../mpich/src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_init.c", line 196: >>>>>>> warning: operands have incompatible pointer types: op "!=" >>>>>>> "../mpich/src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_init.c", line 198: >>>>>>> warning: argument #2 is incompatible with prototype: >>>>>>> "../mpich/src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_init.c", line 198: >>>>>>> warning: assignment type mismatch: >>>>>>> "../mpich/src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_init.c", line 199: >>>>>>> warning: operands have incompatible pointer types: op "==" >>>>>>> "../mpich/src/mpid/ch3/channels/nemesis/src/ch3i_comm.c", line 36: >>>>>>> warning: statement not reached >>>>>>> "../mpich/src/mpid/ch3/channels/nemesis/src/ch3i_comm.c", line 99: >>>>>>> warning: statement not reached >>>>>>> "./src/include/mpichconf.h", line 1132: Warning (Anachronism): Attempt to >>>>>>> redefine __restrict__ without using #undef. >>>>>>> >>>>>>> >>>>>>> >>>>>>> I would be grateful, if somebody can fix the problem. Do you need anything >>>>>>> else? Thank you very much for any help in advance. >>>>>>> >>>>>>> >>>>>>> Kind regards >>>>>>> >>>>>>> Siegmar >>>>>>> _______________________________________________ >>>>>>> discuss mailing list discuss(a)mpich.org >>>>>>> To manage subscription options or unsubscribe: >>>>>>> https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Missing Nemesis ib
by Halim Amer 15 Sep '17

15 Sep '17

The "nemesis:ib" netmod does not exist anymore. Try "ch3:nemesis:mxm" with a dependency on Mellanox's MXM library (can be obtained from the HPCX package at www.mellanox.com/products/hpcx) or "ch3:nemesis:ofi" with a dependency on libfabric (which would be built to support the IB or MXM providers; see https://ofiwg.github.io/libfabric/) Halim www.mcs.anl.gov/~aamer On 9/15/17 4:20 AM, Jason Collins wrote: > Hello everyone. > > Recently, I downloaded Mpich-3.2 > > I want to configure with support for InfiniBand. I've put the following > command: > > # ./configure --prefix=/my/path --with-device=ch3:nemesis:ib > > And I get the following error: > > configure: error: Network module ib is unknown > "./src/mpid/ch3/channels/nemesis/netmod/ib" > > When I check the path I confirm that in the folder "netmod" does not > exist the folder "ib". How can this be solved? > > Many thanks. > <https://audio1.spanishdict.com/audio?lang=en&text=when-i-check-the-path-i-c…> > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] discuss Digest, Vol 59, Issue 9
by Halim Amer 15 Sep '17

15 Sep '17

It seems your compiler environment is messed up. You can't even compile a simple code such as: #include <string> int main () { return 0; ; return 0; } You can either try using g++ instead of icpc (add CC=g++ to your configure line) or ignore the C++ part (add --disable-cxx to the configure line) if you don't need C++ bindings. If you insist on using icpc, then make sure your environment is correctly set up. Try to compile examples outside MPICH that require standard headers (like the example above with string) to see if it works. If it doesn't, forums like stackoverflow and the Intel C++ Forum (https://software.intel.com/en-us/forums/intel-c-compiler) are more appropriate to ask for help. Halim www.mcs.anl.gov/~aamer On 9/15/17 4:25 AM, Xu ZHANG wrote: > Hi, c.txt and config.log are attached. > Please check. > Thank you! > > ------------------ > Best Regards! > Sincerely, > *Dr. Xu ZHANG* > Haixi Institutes, Chinese Academy of Sciences > Haixi Hi-Tech Park, Shangjie, Minhou, Fuzhou, Fujian 350108, P. R. China > Mobile: +86 178-0591-2744 > E-Mail: wyszhangxu(a)foxmail.com > > > ------------------ Original ------------------ > *From: * "discuss-request";<discuss-request(a)mpich.org>; > *Date: * Thu, Sep 14, 2017 01:00 AM > *To: * "discuss"<discuss(a)mpich.org>; > *Subject: * discuss Digest, Vol 59, Issue 9 > > Send discuss mailing list submissions to > discuss(a)mpich.org > > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.mpich.org/mailman/listinfo/discuss > or, via email, send a message with subject or body 'help' to > discuss-request(a)mpich.org > > You can reach the person managing the list at > discuss-owner(a)mpich.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of discuss digest..." > > > Today's Topics: > > 1. Re: Problem in configure of MPICH3.2 (Halim Amer) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Wed, 13 Sep 2017 11:08:12 -0500 > From: Halim Amer <aamer(a)anl.gov> > To: <discuss(a)mpich.org> > Subject: Re: [mpich-discuss] Problem in configure of MPICH3.2 > Message-ID: <bc3a7d53-d7bb-7ada-2db8-57b409f7538d(a)anl.gov> > Content-Type: text/plain; charset="gb18030"; format=flowed > > Can you attach the config.log file as well? > > Halim > www.mcs.anl.gov/~aamer > > On 9/13/17 3:11 AM, Xu ZHANG wrote: > > > > Hello, I face some problem when "./configure" the mpich3.2. > > How can I solve the problem? Thank you. > > Details in c.txt is attached. > > > > ------------------ > > Best Regards! > > Sincerely, > > *Dr. Xu ZHANG????* > > Haixi Institutes, Chinese Academy of Sciences > > Haixi Hi-Tech Park, Shangjie, Minhou, Fuzhou, Fujian 350108, P. R. China > > E-Mail: wyszhangxu(a)foxmail.com > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > ------------------------------ > > Subject: Digest Footer > > _______________________________________________ > discuss mailing list > discuss(a)mpich.org > https://lists.mpich.org/mailman/listinfo/discuss > > ------------------------------ > > End of discuss Digest, Vol 59, Issue 9 > ************************************** > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] discuss Digest, Vol 59, Issue 9
by Xu ZHANG 15 Sep '17

15 Sep '17

Hi, c.txt and config.log are attached. Please check. Thank you! ------------------ Best Regards! Sincerely, Dr. Xu ZHANG Haixi Institutes, Chinese Academy of Sciences Haixi Hi-Tech Park, Shangjie, Minhou, Fuzhou, Fujian 350108, P. R. China Mobile: +86 178-0591-2744 E-Mail: wyszhangxu(a)foxmail.com ------------------ Original ------------------ From: "discuss-request";<discuss-request(a)mpich.org>; Date: Thu, Sep 14, 2017 01:00 AM To: "discuss"<discuss(a)mpich.org>; Subject: discuss Digest, Vol 59, Issue 9 Send discuss mailing list submissions to discuss(a)mpich.org To subscribe or unsubscribe via the World Wide Web, visit https://lists.mpich.org/mailman/listinfo/discuss or, via email, send a message with subject or body 'help' to discuss-request(a)mpich.org You can reach the person managing the list at discuss-owner(a)mpich.org When replying, please edit your Subject line so it is more specific than "Re: Contents of discuss digest..." Today's Topics: 1. Re: Problem in configure of MPICH3.2 (Halim Amer) ---------------------------------------------------------------------- Message: 1 Date: Wed, 13 Sep 2017 11:08:12 -0500 From: Halim Amer <aamer(a)anl.gov> To: <discuss(a)mpich.org> Subject: Re: [mpich-discuss] Problem in configure of MPICH3.2 Message-ID: <bc3a7d53-d7bb-7ada-2db8-57b409f7538d(a)anl.gov> Content-Type: text/plain; charset="gb18030"; format=flowed Can you attach the config.log file as well? Halim www.mcs.anl.gov/~aamer On 9/13/17 3:11 AM, Xu ZHANG wrote: > > Hello, I face some problem when "./configure" the mpich3.2. > How can I solve the problem? Thank you. > Details in c.txt is attached. > > ------------------ > Best Regards! > Sincerely, > *Dr. Xu ZHANG????* > Haixi Institutes, Chinese Academy of Sciences > Haixi Hi-Tech Park, Shangjie, Minhou, Fuzhou, Fujian 350108, P. R. China > E-Mail: wyszhangxu(a)foxmail.com > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > ------------------------------ Subject: Digest Footer _______________________________________________ discuss mailing list discuss(a)mpich.org https://lists.mpich.org/mailman/listinfo/discuss ------------------------------ End of discuss Digest, Vol 59, Issue 9 ************************************** _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Missing Nemesis ib
by Jason Collins 15 Sep '17

15 Sep '17

Hello everyone. Recently, I downloaded Mpich-3.2 I want to configure with support for InfiniBand. I've put the following command: # ./configure --prefix=/my/path --with-device=ch3:nemesis:ib And I get the following error: configure: error: Network module ib is unknown "./src/mpid/ch3/channels/nemesis/netmod/ib" When I check the path I confirm that in the folder "netmod" does not exist the folder "ib". How can this be solved? Many thanks. <https://audio1.spanishdict.com/audio?lang=en&text=when-i-check-the-path-i-c…> _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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IF MPICH3 support 100G Infiniband EDR ?
by ylzhou2012 14 Sep '17

14 Sep '17

Hello, everyone, Here I have a usage question to ask, that we are using a Cloud environment which using 100G EDR. and we are using MPICH-3.1, so I want to ask you if MPICH3 support communication over 100G EDR? If so, hope some usage message or url. Thanks Zhou _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] How to get "no oversubscribe" functionality
by Jeff Hammond 13 Sep '17

13 Sep '17

What are you doing that's leading to oversubscription in the first place? Jeff On Wed, Sep 13, 2017 at 7:11 PM Joe Hellmers <hellmersjl(a)icloud.com> wrote: > Hello all, > > I’m trying to achieve the same functionality with mpirun or mpiexec for > nooversubscribe using MPICH that I can currently can with OPENMPI. > > Is there some way to achieve the same capability with MPICH? > > BTW, I’m using the the latest version of MPICH on Centos 7.3. > > Thanks, > > Joe Hellmers > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss -- Jeff Hammond jeff.science(a)gmail.com http://jeffhammond.github.io/ _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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How to get "no oversubscribe" functionality
by Joe Hellmers 13 Sep '17

13 Sep '17

Hello all, I’m trying to achieve the same functionality with mpirun or mpiexec for nooversubscribe using MPICH that I can currently can with OPENMPI. Is there some way to achieve the same capability with MPICH? BTW, I’m using the the latest version of MPICH on Centos 7.3. Thanks, Joe Hellmers _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Problem in configure of MPICH3.2
by Halim Amer 13 Sep '17

13 Sep '17

Can you attach the config.log file as well? Halim www.mcs.anl.gov/~aamer On 9/13/17 3:11 AM, Xu ZHANG wrote: > > Hello, I face some problem when "./configure" the mpich3.2. > How can I solve the problem? Thank you. > Details in c.txt is attached. > > ------------------ > Best Regards! > Sincerely, > *Dr. Xu ZHANG（张旭）* > Haixi Institutes, Chinese Academy of Sciences > Haixi Hi-Tech Park, Shangjie, Minhou, Fuzhou, Fujian 350108, P. R. China > E-Mail: wyszhangxu(a)foxmail.com > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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