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December 2018

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Re: [mpich-discuss] Request AREQ0263985 assigned to your group: Nek5000 Queue: JLSE
by Jeff Hammond 01 Dec '18

01 Dec '18

I’m pretty sure Kumar meant the JLSE discuss list. Your issue isn’t MPICH but mixing GCC and ICC compilers. Jeff On Fri, Nov 30, 2018 at 12:51 PM Congiu, Giuseppe via discuss < discuss(a)mpich.org> wrote: > Hello, > > I am compiling on the login node. I need to run it on KNL nodes eventually. > > Thank you, > Giuseppe > > On Nov 30, 2018, at 2:00 PM, Kumaran, Kalyan <kumaran(a)anl.gov> wrote: > > Please send to discuss mailing list. What machine is this? > > On Nov 30, 2018, at 1:45 PM, Argonne Service Desk <argonne(a)service-now.com> > wrote: > > > Hello, > > This request has been assigned to your group. Please assign it to an > individual for resolution. > > Number: AREQ0263985 > <https://argonne.service-now.com/nav_to.do?uri=u_ad_hoc_request.do%3Fsys_id=…> > Assignment Group: JLSE (CELS) > Customer: Giuseppe Congiu > Short Description: Nek5000 Queue: JLSE > Details: > received from: gcongiu(a)anl.gov > > Hello, > > I am trying to compile a Nek5000 case on JLSE. When I run makenek I get > the following linker error: > > mpif77 -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE > -DTIMER -I/home/gcongiu/Nek5000/run/hillp -I/home/gcongiu/Nek5000/core -I./ > -o nek5000 obj/hillp.o obj/drive.o obj/drive1.o obj/drive2.o obj/plan5.o > obj/plan4.o obj/bdry.o obj/coef.o obj/conduct.o obj/connect1.o > obj/connect2.o obj/dssum.o obj/edgec.o obj/eigsolv.o obj/gauss.o > obj/genxyz.o obj/navier1.o obj/makeq.o obj/navier0.o obj/navier2.o > obj/navier3.o obj/navier4.o obj/prepost.o obj/speclib.o obj/map2.o > obj/mvmesh.o obj/ic.o obj/gfldr.o obj/ssolv.o obj/planx.o obj/math.o > obj/mxm_wrapper.o obj/hmholtz.o obj/gfdm_par.o obj/gfdm_op.o > obj/gfdm_solve.o obj/subs1.o obj/subs2.o obj/genbox.o obj/gmres.o > obj/hsmg.o obj/convect.o obj/induct.o obj/perturb.o obj/navier5.o > obj/navier6.o obj/navier7.o obj/navier8.o obj/fast3d.o obj/fasts.o > obj/calcz.o obj/byte.o obj/chelpers.o obj/byte_mpi.o obj/postpro.o > obj/intp_usr.o obj/cvode_driver.o obj/nek_comm.o obj/vprops.o > obj/makeq_aux.o obj/papi.o obj/nek_in_situ.o obj/reader_rea.o > obj/reader_par.o obj/reader_re2.o obj/finiparser.o obj/iniparser.o > obj/dictionary.o obj/hpf.o obj/mxm_std.o obj/comm_mpi.o obj/singlmesh.o > obj/blas.o obj/dsygv.o -L/home/gcongiu/Nek5000/3rd_party/gslib/lib -lgs > /usr/bin/ld: obj/finiparser.o: undefined reference to symbol > ‘__intel_sse2_strtok' > > Is there a module I can load that sets the right environment for the > corresponding library? > > Thank you, > Giuseppe > > Please let us know if this request has been incorrectly assigned to your > group. > > Ref:MSG3494386 > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > -- Jeff Hammond jeff.science(a)gmail.com http://jeffhammond.github.io/

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