July 2018 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] Problems building mpich-3.2.1 with PGI 18.4 Community Edition
by Jeff Hammond 20 Jul '18

20 Jul '18

The problem exists in PGI 18 but not PGI 17. This seems like a PGI bug rather than an MPICH one. Jeff On Fri, Jul 20, 2018 at 8:24 AM, Jeff Layton <laytonjb(a)att.net> wrote: > I fixed this problem and I get the exact same error. Again, I grepped > config.log and found the following. > > > $ grep -i error config.log > pgcc-Error-Unknown switch: -qversion > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error > by ';' (conftest.c: 14) > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > | Syntax error > PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error > by ';' (conftest.c: 14) > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > | Syntax error > configure:5951: error: in `/home/laytonjb/src/mpich-3.2.1': > configure:5953: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" > fails sanity check > HAVE_ERROR_CHECKING='' > MPI_MAX_ERROR_STRING='' > > > > I'm not an expert but it looks like configure sends an unknown option to > pgcc (-qversion). Then there appear to be some problems in mpich when built > with pgcc. > > Any comments or thoughts? > > Thanks! > > Jeff > > > Dooh. Thanks - I'll try this and see what happens. > > Thanks! > > Jeff > > Am 19.07.2018 um 01:19 schrieb Jeff Layton <laytonjb(a)att.net> > <laytonjb(a)att.net>: > > Hello, > > I'm trying to build mpich-3.2.1 with the PGI 18.4 Community Edition > compilers. However, I get an error when running configure. The configure > line is, > > ./configure --prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1 > > The error I get is, > > [laytonjb@laytonjb-Lenovo-G50-45 mpich-3.2.1]$ ./conf.jeff > Configuring MPICH version 3.2.1 with '--prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1' > 'CC=/opt/pgi/linux86-64/18.4/bin/pgcc' 'CPP=/opt/pgi/linux86-64/18.4/bin/pgcc' > 'CXX=/opt/pgi/linux86-64/18.4/bin/pgg++' 'FC=/opt/pgi/linux86-64/18.4/bin/pgfortran' > > > pgg++ seems to be typo, duno whether this is related. > > -- Reuti > > > 'F77=/opt/pgi/linux86-64/18.4/bin/pgf77' > Running on system: Linux laytonjb-Lenovo-G50-45 3.10.0-693.17.1.el7.x86_64 > #1 SMP Thu Jan 25 20:13:58 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... no > checking whether /opt/pgi/linux86-64/18.4/bin/pgcc accepts -g... yes > checking for /opt/pgi/linux86-64/18.4/bin/pgcc option to accept ISO > C89... none needed > checking whether /opt/pgi/linux86-64/18.4/bin/pgcc understands -c and -o > together... yes > checking how to run the C preprocessor... /opt/pgi/linux86-64/18.4/bin/pgcc > > configure: error: in `/home/laytonjb/src/mpich-3.2.1': > configure: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" > fails sanity check > See `config.log' for more details > > I've briefly looked through the config.log and this is all that stands > out: > > > $ grep -i error config.log > pgcc-Error-Unknown switch: -qversion > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error > by ';' (conftest.c: 14) > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > | Syntax error > PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error > by ';' (conftest.c: 14) > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > | Syntax error > configure:5951: error: in `/home/laytonjb/src/mpich-3.2.1': > configure:5953: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" > fails sanity check > HAVE_ERROR_CHECKING='' > MPI_MAX_ERROR_STRING='' > > I'm not sure how to fix this error. I've attached the config.log file in > case this helps. > > Thanks for any and all help. > > Jeff > > > > > > > > > <config.log>_______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > -- Jeff Hammond jeff.science(a)gmail.com http://jeffhammond.github.io/ _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Problems building mpich-3.2.1 with PGI 18.4 Community Edition
by Jeff Layton 20 Jul '18

20 Jul '18

On 07/20/2018 11:46 AM, Reuti wrote: >> Am 20.07.2018 um 17:24 schrieb Jeff Layton <laytonjb(a)att.net>: >> >> I fixed this problem and I get the exact same error. Again, I grepped config.log and found the following. >> >> >> $ grep -i error config.log >> pgcc-Error-Unknown switch: -qversion >> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >> PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) >> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >> | Syntax error >> PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) >> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >> | Syntax error >> configure:5951: error: in `/home/laytonjb/src/mpich-3.2.1': >> configure:5953: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check >> HAVE_ERROR_CHECKING='' >> MPI_MAX_ERROR_STRING='' > Please don't set CPP, this is the preprocessor and not the C compiler itself. The GNU cpp should be installed though. > > NB: Usually it's sufficient to name the compilers without paths: > > $ ./configure --prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1 CC=pgcc CXX=pgc++ FC=pgf90 F77=pgf77 > > -- Reuti I'm actually using an Lmod module for the compilers. They are not part of the standard path. I don't set cpp (I think - I will check). Thanks for the help! Jeff > > >> I'm not an expert but it looks like configure sends an unknown option to pgcc (-qversion). Then there appear to be some problems in mpich when built with pgcc. >> >> Any comments or thoughts? >> >> Thanks! >> >> Jeff >> >> >>> Dooh. Thanks - I'll try this and see what happens. >>> >>> Thanks! >>> >>> Jeff >>> >>>>> Am 19.07.2018 um 01:19 schrieb Jeff Layton <laytonjb(a)att.net>: >>>>> >>>>> Hello, >>>>> >>>>> I'm trying to build mpich-3.2.1 with the PGI 18.4 Community Edition compilers. However, I get an error when running configure. The configure line is, >>>>> >>>>> ./configure --prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1 >>>>> >>>>> The error I get is, >>>>> >>>>> [laytonjb@laytonjb-Lenovo-G50-45 mpich-3.2.1]$ ./conf.jeff >>>>> Configuring MPICH version 3.2.1 with '--prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1' 'CC=/opt/pgi/linux86-64/18.4/bin/pgcc' 'CPP=/opt/pgi/linux86-64/18.4/bin/pgcc' 'CXX=/opt/pgi/linux86-64/18.4/bin/pgg++' 'FC=/opt/pgi/linux86-64/18.4/bin/pgfortran' >>>> pgg++ seems to be typo, duno whether this is related. >>>> >>>> -- Reuti >>>> >>>> >>>>> 'F77=/opt/pgi/linux86-64/18.4/bin/pgf77' >>>>> Running on system: Linux laytonjb-Lenovo-G50-45 3.10.0-693.17.1.el7.x86_64 #1 SMP Thu Jan 25 20:13:58 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux >>>>> checking whether the C compiler works... yes >>>>> checking for C compiler default output file name... a.out >>>>> checking for suffix of executables... >>>>> checking whether we are cross compiling... no >>>>> checking for suffix of object files... o >>>>> checking whether we are using the GNU C compiler... no >>>>> checking whether /opt/pgi/linux86-64/18.4/bin/pgcc accepts -g... yes >>>>> checking for /opt/pgi/linux86-64/18.4/bin/pgcc option to accept ISO C89... none needed >>>>> checking whether /opt/pgi/linux86-64/18.4/bin/pgcc understands -c and -o together... yes >>>>> checking how to run the C preprocessor... /opt/pgi/linux86-64/18.4/bin/pgcc >>>>> configure: error: in `/home/laytonjb/src/mpich-3.2.1': >>>>> configure: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check >>>>> See `config.log' for more details >>>>> >>>>> I've briefly looked through the config.log and this is all that stands out: >>>>> >>>>> >>>>> $ grep -i error config.log >>>>> pgcc-Error-Unknown switch: -qversion >>>>> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >>>>> PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) >>>>> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >>>>> | Syntax error >>>>> PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) >>>>> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >>>>> | Syntax error >>>>> configure:5951: error: in `/home/laytonjb/src/mpich-3.2.1': >>>>> configure:5953: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check >>>>> HAVE_ERROR_CHECKING='' >>>>> MPI_MAX_ERROR_STRING='' >>>>> >>>>> I'm not sure how to fix this error. I've attached the config.log file in case this helps. >>>>> >>>>> Thanks for any and all help. >>>>> >>>>> Jeff >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> <config.log>_______________________________________________ >>>>> discuss mailing list discuss(a)mpich.org >>>>> To manage subscription options or unsubscribe: >>>>> https://lists.mpich.org/mailman/listinfo/discuss >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >>> > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Problems building mpich-3.2.1 with PGI 18.4 Community Edition
by Reuti 20 Jul '18

20 Jul '18

> Am 20.07.2018 um 17:24 schrieb Jeff Layton <laytonjb(a)att.net>: > > I fixed this problem and I get the exact same error. Again, I grepped config.log and found the following. > > > $ grep -i error config.log > pgcc-Error-Unknown switch: -qversion > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > | Syntax error > PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > | Syntax error > configure:5951: error: in `/home/laytonjb/src/mpich-3.2.1': > configure:5953: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check > HAVE_ERROR_CHECKING='' > MPI_MAX_ERROR_STRING='' Please don't set CPP, this is the preprocessor and not the C compiler itself. The GNU cpp should be installed though. NB: Usually it's sufficient to name the compilers without paths: $ ./configure --prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1 CC=pgcc CXX=pgc++ FC=pgf90 F77=pgf77 -- Reuti > I'm not an expert but it looks like configure sends an unknown option to pgcc (-qversion). Then there appear to be some problems in mpich when built with pgcc. > > Any comments or thoughts? > > Thanks! > > Jeff > > >> Dooh. Thanks - I'll try this and see what happens. >> >> Thanks! >> >> Jeff >> >>>> Am 19.07.2018 um 01:19 schrieb Jeff Layton <laytonjb(a)att.net>: >>>> >>>> Hello, >>>> >>>> I'm trying to build mpich-3.2.1 with the PGI 18.4 Community Edition compilers. However, I get an error when running configure. The configure line is, >>>> >>>> ./configure --prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1 >>>> >>>> The error I get is, >>>> >>>> [laytonjb@laytonjb-Lenovo-G50-45 mpich-3.2.1]$ ./conf.jeff >>>> Configuring MPICH version 3.2.1 with '--prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1' 'CC=/opt/pgi/linux86-64/18.4/bin/pgcc' 'CPP=/opt/pgi/linux86-64/18.4/bin/pgcc' 'CXX=/opt/pgi/linux86-64/18.4/bin/pgg++' 'FC=/opt/pgi/linux86-64/18.4/bin/pgfortran' >>> pgg++ seems to be typo, duno whether this is related. >>> >>> -- Reuti >>> >>> >>>> 'F77=/opt/pgi/linux86-64/18.4/bin/pgf77' >>>> Running on system: Linux laytonjb-Lenovo-G50-45 3.10.0-693.17.1.el7.x86_64 #1 SMP Thu Jan 25 20:13:58 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux >>>> checking whether the C compiler works... yes >>>> checking for C compiler default output file name... a.out >>>> checking for suffix of executables... >>>> checking whether we are cross compiling... no >>>> checking for suffix of object files... o >>>> checking whether we are using the GNU C compiler... no >>>> checking whether /opt/pgi/linux86-64/18.4/bin/pgcc accepts -g... yes >>>> checking for /opt/pgi/linux86-64/18.4/bin/pgcc option to accept ISO C89... none needed >>>> checking whether /opt/pgi/linux86-64/18.4/bin/pgcc understands -c and -o together... yes >>>> checking how to run the C preprocessor... /opt/pgi/linux86-64/18.4/bin/pgcc >>>> configure: error: in `/home/laytonjb/src/mpich-3.2.1': >>>> configure: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check >>>> See `config.log' for more details >>>> >>>> I've briefly looked through the config.log and this is all that stands out: >>>> >>>> >>>> $ grep -i error config.log >>>> pgcc-Error-Unknown switch: -qversion >>>> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >>>> PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) >>>> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >>>> | Syntax error >>>> PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) >>>> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >>>> | Syntax error >>>> configure:5951: error: in `/home/laytonjb/src/mpich-3.2.1': >>>> configure:5953: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check >>>> HAVE_ERROR_CHECKING='' >>>> MPI_MAX_ERROR_STRING='' >>>> >>>> I'm not sure how to fix this error. I've attached the config.log file in case this helps. >>>> >>>> Thanks for any and all help. >>>> >>>> Jeff >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> <config.log>_______________________________________________ >>>> discuss mailing list discuss(a)mpich.org >>>> To manage subscription options or unsubscribe: >>>> https://lists.mpich.org/mailman/listinfo/discuss >>> >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Problems building mpich-3.2.1 with PGI 18.4 Community Edition
by Jeff Layton 20 Jul '18

20 Jul '18

I fixed this problem and I get the exact same error. Again, I grepped config.log and found the following. $ grep -i error config.log pgcc-Error-Unknown switch: -qversion PGC/x86-64 Linux 18.4-0: compilation completed with severe errors PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) PGC/x86-64 Linux 18.4-0: compilation completed with severe errors | Syntax error PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) PGC/x86-64 Linux 18.4-0: compilation completed with severe errors | Syntax error configure:5951: error: in `/home/laytonjb/src/mpich-3.2.1': configure:5953: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check HAVE_ERROR_CHECKING='' MPI_MAX_ERROR_STRING='' I'm not an expert but it looks like configure sends an unknown option to pgcc (-qversion). Then there appear to be some problems in mpich when built with pgcc. Any comments or thoughts? Thanks! Jeff > Dooh. Thanks - I'll try this and see what happens. > > Thanks! > > Jeff > >>> Am 19.07.2018 um 01:19 schrieb Jeff Layton <laytonjb(a)att.net>: >>> >>> Hello, >>> >>> I'm trying to build mpich-3.2.1 with the PGI 18.4 Community Edition >>> compilers. However, I get an error when running configure. The >>> configure line is, >>> >>> ./configure --prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1 >>> >>> The error I get is, >>> >>> [laytonjb@laytonjb-Lenovo-G50-45 mpich-3.2.1]$ ./conf.jeff >>> Configuring MPICH version 3.2.1 with >>> '--prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1' >>> 'CC=/opt/pgi/linux86-64/18.4/bin/pgcc' >>> 'CPP=/opt/pgi/linux86-64/18.4/bin/pgcc' >>> 'CXX=/opt/pgi/linux86-64/18.4/bin/pgg++' >>> 'FC=/opt/pgi/linux86-64/18.4/bin/pgfortran' >> pgg++ seems to be typo, duno whether this is related. >> >> -- Reuti >> >> >>> 'F77=/opt/pgi/linux86-64/18.4/bin/pgf77' >>> Running on system: Linux laytonjb-Lenovo-G50-45 >>> 3.10.0-693.17.1.el7.x86_64 #1 SMP Thu Jan 25 20:13:58 UTC 2018 >>> x86_64 x86_64 x86_64 GNU/Linux >>> checking whether the C compiler works... yes >>> checking for C compiler default output file name... a.out >>> checking for suffix of executables... >>> checking whether we are cross compiling... no >>> checking for suffix of object files... o >>> checking whether we are using the GNU C compiler... no >>> checking whether /opt/pgi/linux86-64/18.4/bin/pgcc accepts -g... yes >>> checking for /opt/pgi/linux86-64/18.4/bin/pgcc option to accept ISO >>> C89... none needed >>> checking whether /opt/pgi/linux86-64/18.4/bin/pgcc understands -c >>> and -o together... yes >>> checking how to run the C preprocessor... >>> /opt/pgi/linux86-64/18.4/bin/pgcc >>> configure: error: in `/home/laytonjb/src/mpich-3.2.1': >>> configure: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" >>> fails sanity check >>> See `config.log' for more details >>> >>> I've briefly looked through the config.log and this is all that >>> stands out: >>> >>> >>> $ grep -i error config.log >>> pgcc-Error-Unknown switch: -qversion >>> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >>> PGC-S-0035-Syntax error: Recovery attempted by replacing identifier >>> error by ';' (conftest.c: 14) >>> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >>> | Syntax error >>> PGC-S-0035-Syntax error: Recovery attempted by replacing identifier >>> error by ';' (conftest.c: 14) >>> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >>> | Syntax error >>> configure:5951: error: in `/home/laytonjb/src/mpich-3.2.1': >>> configure:5953: error: C preprocessor >>> "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check >>> HAVE_ERROR_CHECKING='' >>> MPI_MAX_ERROR_STRING='' >>> >>> I'm not sure how to fix this error. I've attached the config.log >>> file in case this helps. >>> >>> Thanks for any and all help. >>> >>> Jeff >>> >>> >>> >>> >>> >>> >>> >>> >>> <config.log>_______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >> > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] error when running mpich hydra with sge
by Reuti 20 Jul '18

20 Jul '18

> Am 20.07.2018 um 07:33 schrieb Shuwei Zhao <shuweizhao1991(a)gmail.com>: > > Hi Reuti > > Thank you very much for your response > . I have changed the control_slave to true but the error keeps. Do you know other reason? Could you please share a simple example of running mpi under sge? Having done so, MPICH should detect the granted nodes automatically, hence a plain: $ mpiexec ./my_executable in the jobscript should be sufficient. -- Reuti > Appreciate a lot! > > Thank you! > > On Mon, Jul 16, 2018 at 01:20 Reuti <reuti(a)staff.uni-marburg.de> wrote: > Hi, > > Am 16.07.2018 um 03:16 schrieb Shuwei Zhao: > > > Hi, All, > > > > I met with an issue that when run mpich-3.2.1 with SGE grid. After reading the wikipage https://wiki.mpich.org/mpich/index.php/Using_the_Hydra_Process_Manager, I tried to run a 4 process application on SGE but still get the following error: > > "error: executing task of job 151347 failed: execution daemon on host "host1" didn't accept task" > > "error: executing task of job 151347 failed: execution daemon on host "host1" didn't accept task" > > "error: executing task of job 151347 failed: execution daemon on host "host1" didn't accept task" > > You requested a PE and the definition of the PE includes: > > control_slaves TRUE > > -- Reuti > > > > Here is the list of commands I tried to run: > > mpiexec -n 4 - f machine_file ./my_executable > > mpiexec -rmk sge -n 4 -f machine_file ./my_executable > > mpiexec -launcher sge -n 4 -f machine_file ./my_executable > > mpiexec -rmk sge -launcher sge -n 4 -f machine_file ./my_executable > > > > Has anyone can share with me successful experience on running mpich in sge? Or can anyone point me how to fix this error? > > > > Appreciate your help ahead! > > > > Thanks, > > Shuwei > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] error when running mpich hydra with sge
by Shuwei Zhao 20 Jul '18

20 Jul '18

Hi Reuti Thank you very much for your response . I have changed the control_slave to true but the error keeps. Do you know other reason? Could you please share a simple example of running mpi under sge? Appreciate a lot! Thank you! On Mon, Jul 16, 2018 at 01:20 Reuti <reuti(a)staff.uni-marburg.de> wrote: > Hi, > > Am 16.07.2018 um 03:16 schrieb Shuwei Zhao: > > > Hi, All, > > > > I met with an issue that when run mpich-3.2.1 with SGE grid. After > reading the wikipage > https://wiki.mpich.org/mpich/index.php/Using_the_Hydra_Process_Manager, I > tried to run a 4 process application on SGE but still get the following > error: > > "error: executing task of job 151347 failed: execution daemon on > host "host1" didn't accept task" > > "error: executing task of job 151347 failed: execution daemon on host > "host1" didn't accept task" > > "error: executing task of job 151347 failed: execution daemon on host > "host1" didn't accept task" > > You requested a PE and the definition of the PE includes: > > control_slaves TRUE > > -- Reuti > > > > Here is the list of commands I tried to run: > > mpiexec -n 4 - f machine_file ./my_executable > > mpiexec -rmk sge -n 4 -f machine_file ./my_executable > > mpiexec -launcher sge -n 4 -f machine_file ./my_executable > > mpiexec -rmk sge -launcher sge -n 4 -f machine_file ./my_executable > > > > Has anyone can share with me successful experience on running mpich in > sge? Or can anyone point me how to fix this error? > > > > Appreciate your help ahead! > > > > Thanks, > > Shuwei > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Problems building mpich-3.2.1 with PGI 18.4 Community Edition
by Jeff Layton 19 Jul '18

19 Jul '18

Dooh. Thanks - I'll try this and see what happens. Thanks! Jeff >> Am 19.07.2018 um 01:19 schrieb Jeff Layton <laytonjb(a)att.net>: >> >> Hello, >> >> I'm trying to build mpich-3.2.1 with the PGI 18.4 Community Edition compilers. However, I get an error when running configure. The configure line is, >> >> ./configure --prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1 >> >> The error I get is, >> >> [laytonjb@laytonjb-Lenovo-G50-45 mpich-3.2.1]$ ./conf.jeff >> Configuring MPICH version 3.2.1 with '--prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1' 'CC=/opt/pgi/linux86-64/18.4/bin/pgcc' 'CPP=/opt/pgi/linux86-64/18.4/bin/pgcc' 'CXX=/opt/pgi/linux86-64/18.4/bin/pgg++' 'FC=/opt/pgi/linux86-64/18.4/bin/pgfortran' > pgg++ seems to be typo, duno whether this is related. > > -- Reuti > > >> 'F77=/opt/pgi/linux86-64/18.4/bin/pgf77' >> Running on system: Linux laytonjb-Lenovo-G50-45 3.10.0-693.17.1.el7.x86_64 #1 SMP Thu Jan 25 20:13:58 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux >> checking whether the C compiler works... yes >> checking for C compiler default output file name... a.out >> checking for suffix of executables... >> checking whether we are cross compiling... no >> checking for suffix of object files... o >> checking whether we are using the GNU C compiler... no >> checking whether /opt/pgi/linux86-64/18.4/bin/pgcc accepts -g... yes >> checking for /opt/pgi/linux86-64/18.4/bin/pgcc option to accept ISO C89... none needed >> checking whether /opt/pgi/linux86-64/18.4/bin/pgcc understands -c and -o together... yes >> checking how to run the C preprocessor... /opt/pgi/linux86-64/18.4/bin/pgcc >> configure: error: in `/home/laytonjb/src/mpich-3.2.1': >> configure: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check >> See `config.log' for more details >> >> I've briefly looked through the config.log and this is all that stands out: >> >> >> $ grep -i error config.log >> pgcc-Error-Unknown switch: -qversion >> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >> PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) >> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >> | Syntax error >> PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) >> PGC/x86-64 Linux 18.4-0: compilation completed with severe errors >> | Syntax error >> configure:5951: error: in `/home/laytonjb/src/mpich-3.2.1': >> configure:5953: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check >> HAVE_ERROR_CHECKING='' >> MPI_MAX_ERROR_STRING='' >> >> I'm not sure how to fix this error. I've attached the config.log file in case this helps. >> >> Thanks for any and all help. >> >> Jeff >> >> >> >> >> >> >> >> >> <config.log>_______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Problems building mpich-3.2.1 with PGI 18.4 Community Edition
by Reuti 19 Jul '18

19 Jul '18

> Am 19.07.2018 um 01:19 schrieb Jeff Layton <laytonjb(a)att.net>: > > Hello, > > I'm trying to build mpich-3.2.1 with the PGI 18.4 Community Edition compilers. However, I get an error when running configure. The configure line is, > > ./configure --prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1 > > The error I get is, > > [laytonjb@laytonjb-Lenovo-G50-45 mpich-3.2.1]$ ./conf.jeff > Configuring MPICH version 3.2.1 with '--prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1' 'CC=/opt/pgi/linux86-64/18.4/bin/pgcc' 'CPP=/opt/pgi/linux86-64/18.4/bin/pgcc' 'CXX=/opt/pgi/linux86-64/18.4/bin/pgg++' 'FC=/opt/pgi/linux86-64/18.4/bin/pgfortran' pgg++ seems to be typo, duno whether this is related. -- Reuti > 'F77=/opt/pgi/linux86-64/18.4/bin/pgf77' > Running on system: Linux laytonjb-Lenovo-G50-45 3.10.0-693.17.1.el7.x86_64 #1 SMP Thu Jan 25 20:13:58 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... no > checking whether /opt/pgi/linux86-64/18.4/bin/pgcc accepts -g... yes > checking for /opt/pgi/linux86-64/18.4/bin/pgcc option to accept ISO C89... none needed > checking whether /opt/pgi/linux86-64/18.4/bin/pgcc understands -c and -o together... yes > checking how to run the C preprocessor... /opt/pgi/linux86-64/18.4/bin/pgcc > configure: error: in `/home/laytonjb/src/mpich-3.2.1': > configure: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check > See `config.log' for more details > > I've briefly looked through the config.log and this is all that stands out: > > > $ grep -i error config.log > pgcc-Error-Unknown switch: -qversion > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > | Syntax error > PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) > PGC/x86-64 Linux 18.4-0: compilation completed with severe errors > | Syntax error > configure:5951: error: in `/home/laytonjb/src/mpich-3.2.1': > configure:5953: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check > HAVE_ERROR_CHECKING='' > MPI_MAX_ERROR_STRING='' > > I'm not sure how to fix this error. I've attached the config.log file in case this helps. > > Thanks for any and all help. > > Jeff > > > > > > > > > <config.log>_______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Problems building mpich-3.2.1 with PGI 18.4 Community Edition
by Jeff Layton 18 Jul '18

18 Jul '18

Hello, I'm trying to build mpich-3.2.1 with the PGI 18.4 Community Edition compilers. However, I get an error when running configure. The configure line is, ./configure --prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1 The error I get is, [laytonjb@laytonjb-Lenovo-G50-45 mpich-3.2.1]$ ./conf.jeff Configuring MPICH version 3.2.1 with '--prefix=/home/laytonjb/bin/pgi-18.4-mpich-3.2.1' 'CC=/opt/pgi/linux86-64/18.4/bin/pgcc' 'CPP=/opt/pgi/linux86-64/18.4/bin/pgcc' 'CXX=/opt/pgi/linux86-64/18.4/bin/pgg++' 'FC=/opt/pgi/linux86-64/18.4/bin/pgfortran' 'F77=/opt/pgi/linux86-64/18.4/bin/pgf77' Running on system: Linux laytonjb-Lenovo-G50-45 3.10.0-693.17.1.el7.x86_64 #1 SMP Thu Jan 25 20:13:58 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether /opt/pgi/linux86-64/18.4/bin/pgcc accepts -g... yes checking for /opt/pgi/linux86-64/18.4/bin/pgcc option to accept ISO C89... none needed checking whether /opt/pgi/linux86-64/18.4/bin/pgcc understands -c and -o together... yes checking how to run the C preprocessor... /opt/pgi/linux86-64/18.4/bin/pgcc configure: error: in `/home/laytonjb/src/mpich-3.2.1': configure: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check See `config.log' for more details I've briefly looked through the config.log and this is all that stands out: $ grep -i error config.log pgcc-Error-Unknown switch: -qversion PGC/x86-64 Linux 18.4-0: compilation completed with severe errors PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) PGC/x86-64 Linux 18.4-0: compilation completed with severe errors | Syntax error PGC-S-0035-Syntax error: Recovery attempted by replacing identifier error by ';' (conftest.c: 14) PGC/x86-64 Linux 18.4-0: compilation completed with severe errors | Syntax error configure:5951: error: in `/home/laytonjb/src/mpich-3.2.1': configure:5953: error: C preprocessor "/opt/pgi/linux86-64/18.4/bin/pgcc" fails sanity check HAVE_ERROR_CHECKING='' MPI_MAX_ERROR_STRING='' I'm not sure how to fix this error. I've attached the config.log file in case this helps. Thanks for any and all help. Jeff _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Has MPICH optimized neighborhood collectives?
by Junchao Zhang 18 Jul '18

18 Jul '18

Hello, Has MPICH optimized neighborhood collectives, in particular, MPI_Ineighbor_alltoallv? If yes, how to enable it and is it also available in Cray or Intel MPI? Thank you. --Junchao Zhang _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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