July 2020 - petsc-dev - mailman3.cels.anl.gov

Re: [petsc-dev] C++ error
by Mark Adams 14 Jul '20

14 Jul '20

On Tue, Jul 14, 2020 at 5:41 PM Satish Balay <balay(a)mcs.anl.gov> wrote: > On Tue, 14 Jul 2020, Mark Adams wrote: > > > > BTW: With CI - you can start it, cancel it, and then re-run only > selected > > > jobs - so that unneeded jobs are avoided. [when debugging specific > failures > > > on specific jobs] > > > > > > > I did not see that. How do you select just one run? I can see how to > rerun > > it but it does not pull a new version AFAIK. > > A given pipeline corresponds to a given commit. So when you push new > commits [for fixes] - you need a new pipeline. > > But - once you start this new pipeline - you can cancel it [after pre > stage] > Ah yes, I see. > > And then 'rerun' selected jobs on this new pipeline. (click the circular > toggle next to any given job) > > If the selected jobs succeed - and want to run the full pipeline - you can > do this [from the top right corner] > > Satish >

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Re: [petsc-dev] C++ error
by Satish Balay 14 Jul '20

14 Jul '20

On Tue, 14 Jul 2020, Mark Adams wrote: > > BTW: With CI - you can start it, cancel it, and then re-run only selected > > jobs - so that unneeded jobs are avoided. [when debugging specific failures > > on specific jobs] > > > > I did not see that. How do you select just one run? I can see how to rerun > it but it does not pull a new version AFAIK. A given pipeline corresponds to a given commit. So when you push new commits [for fixes] - you need a new pipeline. But - once you start this new pipeline - you can cancel it [after pre stage] And then 'rerun' selected jobs on this new pipeline. (click the circular toggle next to any given job) If the selected jobs succeed - and want to run the full pipeline - you can do this [from the top right corner] Satish

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Re: [petsc-dev] C++ error
by Mark Adams 14 Jul '20

14 Jul '20

On Tue, Jul 14, 2020 at 3:42 PM Satish Balay <balay(a)mcs.anl.gov> wrote: > On Tue, 14 Jul 2020, Mark Adams wrote: > > > > > > > > > > Just build with --with-single-library=0 --with-shared-libraries=0 > > > > > > > FYI, that did not seem to work. But I think I figured it out (without too > > many more runs). > > Hm - static build would give errors while compiling examples if > PETSC_DM_LIB is used instead of PETSC_LIB in link line [and the associated > function from DM is used by the example] > > shared builds give this error on Ubuntu - but not on fedora [don't know > why]. And I don't know if OSX gives this error or not. > I am on OSX. > > BTW: With CI - you can start it, cancel it, and then re-run only selected > jobs - so that unneeded jobs are avoided. [when debugging specific failures > on specific jobs] > I did not see that. How do you select just one run? I can see how to rerun it but it does not pull a new version AFAIK. > > Satish >

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Re: [petsc-dev] C++ error
by Satish Balay 14 Jul '20

14 Jul '20

On Tue, 14 Jul 2020, Mark Adams wrote: > > > > > > Just build with --with-single-library=0 --with-shared-libraries=0 > > > > FYI, that did not seem to work. But I think I figured it out (without too > many more runs). Hm - static build would give errors while compiling examples if PETSC_DM_LIB is used instead of PETSC_LIB in link line [and the associated function from DM is used by the example] shared builds give this error on Ubuntu - but not on fedora [don't know why]. And I don't know if OSX gives this error or not. BTW: With CI - you can start it, cancel it, and then re-run only selected jobs - so that unneeded jobs are avoided. [when debugging specific failures on specific jobs] Satish

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Re: [petsc-dev] C++ error
by Mark Adams 14 Jul '20

14 Jul '20

> > > Just build with --with-single-library=0 --with-shared-libraries=0 > FYI, that did not seem to work. But I think I figured it out (without too many more runs).

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Re: [petsc-dev] gcc 10
by Satish Balay 14 Jul '20

14 Jul '20

On Mon, 13 Jul 2020, Satish Balay via petsc-dev wrote: > On Mon, 13 Jul 2020, Satish Balay via petsc-dev wrote: > > > Yeah - we fixed PETSc [maint] to not require -fallow-argument-mismatch - and use it only with externalpacakges that need it > > > > And we do have one test box with gfortran-10 - but the test coverage with it is minimal. [mostly no externalpacakges] > > One way to increase gcc/gfortran-10 test coverage: > > https://gitlab.com/petsc/petsc/-/commit/71e9b239c1319789e8eb99a325a7bf58f24… > https://gitlab.com/petsc/petsc/-/jobs/636756484 I'm inclined to update CI to use this change. Will push.. Satish > > At some point all OSX tests would have to move to gfortran-10 - but I'm hesitating to do this brew update on test boxes for now.. > > Satish >

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Re: [petsc-dev] C++ error
by Satish Balay 14 Jul '20

14 Jul '20

$ git grep DMPlexSNESComputeJacobianFEM include/petscdmplex.h:PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianFEM(DM, Vec, Mat, Mat, void *); src/dm/impls/plex/landau/plexland.c: ierr = DMPlexSNESComputeJacobianFEM(plex, locX, *Amat, *Amat, ctx);CHKERRQ(ierr); src/snes/utils/dmplexsnes.c:PetscErrorCode DMPlexSNESComputeJacobianFEM(DM dm, Vec X, Mat Jac, Mat JacP,void *user) So the function is in -lpetscsnes - but its referred to from -lpetscdm [not just examples] - hence a circular dependency. You should be able to reproduce this issue on your laptop - instead of using CI for this. Just build with --with-single-library=0 --with-shared-libraries=0 Satish On Tue, 14 Jul 2020, Mark Adams wrote: > I am pretty sure I've removed stray includes (this did fix one > undefined reference), but I am not fixing DMPlexSNESComputeJacobianFEM. > > DMPlexSNESComputeJacobianFEM is not called from any other source. Just > examples. And it is NOT called from the examples that fail: > > /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: > undefined reference to `DMPlexSNESComputeJacobianFEM' > collect2: error: ld returned 1 exit status > make[2]: *** [arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240] Error 1 > > https://gitlab.com/petsc/petsc/-/jobs/637821856 > https://gitlab.com/petsc/petsc/-/jobs/637821886 > https://gitlab.com/petsc/petsc/-/jobs/637821944 > > This seems to be saying that libpetscdm can not find my reference to > DMPlexSNESComputeJacobianFEM, called from in the lib. > > Maybe DMPlexSNESComputeJacobianFEM is set to be external but I am now using > it internally and it would need to be declared differently? > > > On Mon, Jul 13, 2020 at 8:19 PM Mark Adams <mfadams(a)lbl.gov> wrote: > > > > > > > On Mon, Jul 13, 2020 at 7:11 PM Satish Balay <balay(a)mcs.anl.gov> wrote: > > > >> $ git grep DMPlexLandFormLandau_Internal > >> include/petsc/private/dmpleximpl.h:PETSC_INTERN PetscErrorCode > >> DMPlexLandFormLandau_Internal(Vec, Mat, const PetscInt, void *); > >> src/dm/impls/plex/landau/plexland.c: DMPlexLandFormLandau_Internal - > >> Evaluates Jacobian matrix. > >> src/dm/impls/plex/landau/plexland.c:PetscErrorCode > >> DMPlexLandFormLandau_Internal(Vec a_X, Mat JacP, const PetscInt dim, void > >> *a_ctx) > >> src/ts/utils/dmplexts.c:PETSC_INTERN PetscErrorCode > >> DMPlexLandFormLandau_Internal(Vec, Mat, const PetscInt, void *); > >> src/ts/utils/dmplexts.c: ierr = > >> DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx);CHKERRQ(ierr); > >> src/ts/utils/dmplexts.c: ierr = > >> DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx); CHKERRQ(ierr); > >> > >> > >> You'll need the PETSC_EXTERN in include/petsc/private/dmpleximpl.h and > >> remove the duplicate prototype listing from src/ts/utils/dmplexts.c > >> > > > > Thanks, the first error that I got was undefined again: > > > > arch-ci-linux-cuda-single-cxx/obj/ts/utils/dmplexts.o: In function > > `DMPlexLandIFunction': > > 2264 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2264>/home/petsc/builds/KFnbdjNX/0/petsc/petsc/src/ts/utils/dmplexts.c:266: > > undefined reference to `DMPlexLandFormLandau_Internal' > > 2265 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2265>arch-ci-linux-cuda-single-cxx/obj/ts/utils/dmplexts.o: > > In function `DMPlexLandIJacobian': > > 2266 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2266>/home/petsc/builds/KFnbdjNX/0/petsc/petsc/src/ts/utils/dmplexts.c:305: > > undefined reference to `DMPlexLandFormLandau_Internal' > > 2267 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2267>/usr/bin/ld: > > arch-ci-linux-cuda-single-cxx/lib/libpetscts.so.3.013.3: hidden symbol > > `DMPlexLandFormLandau_Internal' isn't defined > > 2268 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2268>/usr/bin/ld: > > final link failed: Bad value > > 2269 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2269>collect2: > > error: ld returned 1 exit status > > 2270 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2270>gmakefile:149: > > recipe for target 'arch-ci-linux-cuda-single-cxx/lib/libpetscts.so.3.013.3' > > failed > > 2271 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2271>make[3]: *** > > [arch-ci-linux-cuda-single-cxx/lib/libpetscts.so.3.013.3] Error 1 > > 2272 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2272>make[3]: *** > > Waiting for unfinished jobs.... > > 2273 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2273> FC > > arch-ci-linux-cuda-single-cxx/obj/tao/f90-mod/petsctaomod.o > > 2274 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2274>/home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/rules:49: > > recipe for target 'libs' failed > > > > > > https://gitlab.com/petsc/petsc/-/jobs/636864970 > > > > > > I'll try extern > > > > > >> Satish > >> > >> > >> > I tried to add code to DMPlexts.c and am getting this error: > >> > > >> > https://gitlab.com/petsc/petsc/-/jobs/636828148 > >> > > >> > dmplexts.c:(.text+0x1a0f): undefined reference to > >> > `DMPlexLandFormLandau_Internal' > >> > 1648 <https://gitlab.com/petsc/petsc/-/jobs/636828148#L1648> > >> > > >> > with this code: > >> > > >> > PETSC_INTERN PetscErrorCode DMPlexLandFormLandau_Internal(Vec a_X, Mat > >> > JacP, const PetscInt dim, void *a_ctx); > >> > /*@ > >> > DMPlexLandIFunction > >> > @*/ > >> > PetscErrorCode DMPlexLandIFunction(TS ts,PetscReal time_dummy,Vec X,Vec > >> > X_t,Vec F,void *actx) > >> > { > >> > ..... > >> > ierr = > >> > DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx);CHKERRQ(ierr); > >> > > >> > I tried with EXTERN also. Any ideas? > >> > Thanks, > >> > Mark > >> > > >> > >> >

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Re: [petsc-dev] C++ error
by Mark Adams 14 Jul '20

14 Jul '20

I am pretty sure I've removed stray includes (this did fix one undefined reference), but I am not fixing DMPlexSNESComputeJacobianFEM. DMPlexSNESComputeJacobianFEM is not called from any other source. Just examples. And it is NOT called from the examples that fail: /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: undefined reference to `DMPlexSNESComputeJacobianFEM' collect2: error: ld returned 1 exit status make[2]: *** [arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240] Error 1 https://gitlab.com/petsc/petsc/-/jobs/637821856 https://gitlab.com/petsc/petsc/-/jobs/637821886 https://gitlab.com/petsc/petsc/-/jobs/637821944 This seems to be saying that libpetscdm can not find my reference to DMPlexSNESComputeJacobianFEM, called from in the lib. Maybe DMPlexSNESComputeJacobianFEM is set to be external but I am now using it internally and it would need to be declared differently? On Mon, Jul 13, 2020 at 8:19 PM Mark Adams <mfadams(a)lbl.gov> wrote: > > > On Mon, Jul 13, 2020 at 7:11 PM Satish Balay <balay(a)mcs.anl.gov> wrote: > >> $ git grep DMPlexLandFormLandau_Internal >> include/petsc/private/dmpleximpl.h:PETSC_INTERN PetscErrorCode >> DMPlexLandFormLandau_Internal(Vec, Mat, const PetscInt, void *); >> src/dm/impls/plex/landau/plexland.c: DMPlexLandFormLandau_Internal - >> Evaluates Jacobian matrix. >> src/dm/impls/plex/landau/plexland.c:PetscErrorCode >> DMPlexLandFormLandau_Internal(Vec a_X, Mat JacP, const PetscInt dim, void >> *a_ctx) >> src/ts/utils/dmplexts.c:PETSC_INTERN PetscErrorCode >> DMPlexLandFormLandau_Internal(Vec, Mat, const PetscInt, void *); >> src/ts/utils/dmplexts.c: ierr = >> DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx);CHKERRQ(ierr); >> src/ts/utils/dmplexts.c: ierr = >> DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx); CHKERRQ(ierr); >> >> >> You'll need the PETSC_EXTERN in include/petsc/private/dmpleximpl.h and >> remove the duplicate prototype listing from src/ts/utils/dmplexts.c >> > > Thanks, the first error that I got was undefined again: > > arch-ci-linux-cuda-single-cxx/obj/ts/utils/dmplexts.o: In function > `DMPlexLandIFunction': > 2264 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2264>/home/petsc/builds/KFnbdjNX/0/petsc/petsc/src/ts/utils/dmplexts.c:266: > undefined reference to `DMPlexLandFormLandau_Internal' > 2265 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2265>arch-ci-linux-cuda-single-cxx/obj/ts/utils/dmplexts.o: > In function `DMPlexLandIJacobian': > 2266 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2266>/home/petsc/builds/KFnbdjNX/0/petsc/petsc/src/ts/utils/dmplexts.c:305: > undefined reference to `DMPlexLandFormLandau_Internal' > 2267 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2267>/usr/bin/ld: > arch-ci-linux-cuda-single-cxx/lib/libpetscts.so.3.013.3: hidden symbol > `DMPlexLandFormLandau_Internal' isn't defined > 2268 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2268>/usr/bin/ld: > final link failed: Bad value > 2269 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2269>collect2: > error: ld returned 1 exit status > 2270 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2270>gmakefile:149: > recipe for target 'arch-ci-linux-cuda-single-cxx/lib/libpetscts.so.3.013.3' > failed > 2271 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2271>make[3]: *** > [arch-ci-linux-cuda-single-cxx/lib/libpetscts.so.3.013.3] Error 1 > 2272 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2272>make[3]: *** > Waiting for unfinished jobs.... > 2273 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2273> FC > arch-ci-linux-cuda-single-cxx/obj/tao/f90-mod/petsctaomod.o > 2274 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2274>/home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/rules:49: > recipe for target 'libs' failed > > > https://gitlab.com/petsc/petsc/-/jobs/636864970 > > > I'll try extern > > >> Satish >> >> >> > I tried to add code to DMPlexts.c and am getting this error: >> > >> > https://gitlab.com/petsc/petsc/-/jobs/636828148 >> > >> > dmplexts.c:(.text+0x1a0f): undefined reference to >> > `DMPlexLandFormLandau_Internal' >> > 1648 <https://gitlab.com/petsc/petsc/-/jobs/636828148#L1648> >> > >> > with this code: >> > >> > PETSC_INTERN PetscErrorCode DMPlexLandFormLandau_Internal(Vec a_X, Mat >> > JacP, const PetscInt dim, void *a_ctx); >> > /*@ >> > DMPlexLandIFunction >> > @*/ >> > PetscErrorCode DMPlexLandIFunction(TS ts,PetscReal time_dummy,Vec X,Vec >> > X_t,Vec F,void *actx) >> > { >> > ..... >> > ierr = >> > DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx);CHKERRQ(ierr); >> > >> > I tried with EXTERN also. Any ideas? >> > Thanks, >> > Mark >> > >> >>

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Re: [petsc-dev] C++ error
by Mark Adams 13 Jul '20

13 Jul '20

On Mon, Jul 13, 2020 at 7:11 PM Satish Balay <balay(a)mcs.anl.gov> wrote: > $ git grep DMPlexLandFormLandau_Internal > include/petsc/private/dmpleximpl.h:PETSC_INTERN PetscErrorCode > DMPlexLandFormLandau_Internal(Vec, Mat, const PetscInt, void *); > src/dm/impls/plex/landau/plexland.c: DMPlexLandFormLandau_Internal - > Evaluates Jacobian matrix. > src/dm/impls/plex/landau/plexland.c:PetscErrorCode > DMPlexLandFormLandau_Internal(Vec a_X, Mat JacP, const PetscInt dim, void > *a_ctx) > src/ts/utils/dmplexts.c:PETSC_INTERN PetscErrorCode > DMPlexLandFormLandau_Internal(Vec, Mat, const PetscInt, void *); > src/ts/utils/dmplexts.c: ierr = > DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx);CHKERRQ(ierr); > src/ts/utils/dmplexts.c: ierr = > DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx); CHKERRQ(ierr); > > > You'll need the PETSC_EXTERN in include/petsc/private/dmpleximpl.h and > remove the duplicate prototype listing from src/ts/utils/dmplexts.c > Thanks, the first error that I got was undefined again: arch-ci-linux-cuda-single-cxx/obj/ts/utils/dmplexts.o: In function `DMPlexLandIFunction': 2264 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2264>/home/petsc/builds/KFnbdjNX/0/petsc/petsc/src/ts/utils/dmplexts.c:266: undefined reference to `DMPlexLandFormLandau_Internal' 2265 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2265>arch-ci-linux-cuda-single-cxx/obj/ts/utils/dmplexts.o: In function `DMPlexLandIJacobian': 2266 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2266>/home/petsc/builds/KFnbdjNX/0/petsc/petsc/src/ts/utils/dmplexts.c:305: undefined reference to `DMPlexLandFormLandau_Internal' 2267 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2267>/usr/bin/ld: arch-ci-linux-cuda-single-cxx/lib/libpetscts.so.3.013.3: hidden symbol `DMPlexLandFormLandau_Internal' isn't defined 2268 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2268>/usr/bin/ld: final link failed: Bad value 2269 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2269>collect2: error: ld returned 1 exit status 2270 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2270>gmakefile:149: recipe for target 'arch-ci-linux-cuda-single-cxx/lib/libpetscts.so.3.013.3' failed 2271 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2271>make[3]: *** [arch-ci-linux-cuda-single-cxx/lib/libpetscts.so.3.013.3] Error 1 2272 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2272>make[3]: *** Waiting for unfinished jobs.... 2273 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2273> FC arch-ci-linux-cuda-single-cxx/obj/tao/f90-mod/petsctaomod.o 2274 <https://gitlab.com/petsc/petsc/-/jobs/636864970#L2274>/home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/rules:49: recipe for target 'libs' failed https://gitlab.com/petsc/petsc/-/jobs/636864970 I'll try extern > Satish > > > > I tried to add code to DMPlexts.c and am getting this error: > > > > https://gitlab.com/petsc/petsc/-/jobs/636828148 > > > > dmplexts.c:(.text+0x1a0f): undefined reference to > > `DMPlexLandFormLandau_Internal' > > 1648 <https://gitlab.com/petsc/petsc/-/jobs/636828148#L1648> > > > > with this code: > > > > PETSC_INTERN PetscErrorCode DMPlexLandFormLandau_Internal(Vec a_X, Mat > > JacP, const PetscInt dim, void *a_ctx); > > /*@ > > DMPlexLandIFunction > > @*/ > > PetscErrorCode DMPlexLandIFunction(TS ts,PetscReal time_dummy,Vec X,Vec > > X_t,Vec F,void *actx) > > { > > ..... > > ierr = > > DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx);CHKERRQ(ierr); > > > > I tried with EXTERN also. Any ideas? > > Thanks, > > Mark > > > >

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Re: [petsc-dev] pipeline failure
by Matthew Knepley 13 Jul '20

13 Jul '20

On Mon, Jul 13, 2020 at 4:54 PM Mark Adams <mfadams(a)lbl.gov> wrote: > I'm not seeing Matt's allusion ... should I put this in ts/utils and > petscts.h? > If it calls TS things, it must be in TS. I think you put it in dmplexts.c for now, which is fine. Thanks, MAtt > On Mon, Jul 13, 2020 at 4:32 PM Satish Balay <balay(a)mcs.anl.gov> wrote: > >> At Matt alluded to - its a circular dependency - hence the error. >> >> i.e DMPlexSNESComputeJacobianFEM() is a SNES function - so it can't be >> called from DM sources [src/dm/impls/plex/landau/plexland.c] >> >> The dependency order is: >> >> -lpetsctao -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat >> -lpetscvec -lpetscsys >> >> Satish >> >> On Mon, 13 Jul 2020, Mark Adams wrote: >> >> > I did add #include <petscts.h> to petscdmplex.h. THat is all that I can >> see >> > that could cause trouble. >> > >> > On Mon, Jul 13, 2020 at 4:11 PM Mark Adams <mfadams(a)lbl.gov> wrote: >> > >> > > THis error was in this one also, plus warnings: >> > > >> > > https://gitlab.com/petsc/petsc/-/jobs/636537354 >> > > >> > > >> "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h", >> > > line 21: warning: operands have incompatible types: >> > > struct {pointer to long long perm, pointer to long long invPerm} ":" >> > > const struct {pointer to long long perm, pointer to long long >> invPerm} >> > > >> "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h", >> > > line 21: warning: operands have incompatible types: >> > > struct {pointer to long long perm, pointer to long long invPerm} ":" >> > > const struct {pointer to long long perm, pointer to long long >> invPerm} >> > > >> "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/petscfeimpl.h", >> > > line 19: warning: linker scope was specified more than once: >> "PETSCFE_SetUp" >> > > >> > > On Mon, Jul 13, 2020 at 4:08 PM Mark Adams <mfadams(a)lbl.gov> wrote: >> > > >> > >> >> > >> On Mon, Jul 13, 2020 at 4:01 PM Matthew Knepley <knepley(a)gmail.com> >> > >> wrote: >> > >> >> > >>> Do these have -single-library ? >> > >>> >> > >> >> > >> This was in a single configuration, but it also happened in this one: >> > >> >> > >> >> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: >> > >> undefined reference to `TSGetDM' >> > >> >> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: >> > >> undefined reference to `DMPlexSNESComputeJacobianFEM' >> > >> collect2: error: ld returned 1 exit status >> > >> gmakefile.test:185: recipe for target >> > >> 'arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96' failed >> > >> make[2]: *** [arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96] >> Error 1 >> > >> make[2]: *** Waiting for unfinished jobs.... >> > >> >> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/lib/petsc/conf/test.common:26: >> > >> recipe for target 'allgtest-tap' failed >> > >> make[1]: *** [allgtest-tap] Error 2 >> > >> GNUmakefile:17: recipe for target 'allgtests-tap' failed >> > >> make: *** [allgtests-tap] Error 2 >> > >> Running after_script >> > >> >> > >> >> > >>> >> > >>> Thanks, >> > >>> >> > >>> Matt >> > >>> >> > >>> On Mon, Jul 13, 2020 at 3:51 PM Mark Adams <mfadams(a)lbl.gov> wrote: >> > >>> >> > >>>> I am getting this error on two pipeline tests. They don't seem to >> have >> > >>>> anything to do with my branch. I have gotten these several times >> today. >> > >>>> >> > >>>> >> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: >> > >>>> undefined reference to `DMPlexSNESComputeJacobianFEM' >> > >>>> >> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: >> > >>>> undefined reference to `TSGetDM' >> > >>>> collect2: error: ld returned 1 exit status >> > >>>> make[2]: *** [arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240] >> > >>>> Error 1 >> > >>>> make[2]: *** Waiting for unfinished jobs.... >> > >>>> gmakefile.test:185: recipe for target >> > >>>> 'arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240' failed >> > >>>> make[1]: *** [allgtest-tap] Error 2 >> > >>>> >> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/test.common:26: >> > >>>> recipe for target 'allgtest-tap' failed >> > >>>> GNUmakefile:17: recipe for target 'allgtests-tap' failed >> > >>>> make: *** [allgtests-tap] Error 2 >> > >>>> >> > >>> >> > >>> >> > >>> -- >> > >>> What most experimenters take for granted before they begin their >> > >>> experiments is infinitely more interesting than any results to >> which their >> > >>> experiments lead. >> > >>> -- Norbert Wiener >> > >>> >> > >>> https://www.cse.buffalo.edu/~knepley/ >> > >>> <http://www.cse.buffalo.edu/~knepley/> >> > >>> >> > >> >> > >> >> -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>

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