July 2020 - petsc-dev - mailman3.cels.anl.gov

Re: [petsc-dev] C++ error
by Satish Balay 13 Jul '20

13 Jul '20

$ git grep DMPlexLandFormLandau_Internal include/petsc/private/dmpleximpl.h:PETSC_INTERN PetscErrorCode DMPlexLandFormLandau_Internal(Vec, Mat, const PetscInt, void *); src/dm/impls/plex/landau/plexland.c: DMPlexLandFormLandau_Internal - Evaluates Jacobian matrix. src/dm/impls/plex/landau/plexland.c:PetscErrorCode DMPlexLandFormLandau_Internal(Vec a_X, Mat JacP, const PetscInt dim, void *a_ctx) src/ts/utils/dmplexts.c:PETSC_INTERN PetscErrorCode DMPlexLandFormLandau_Internal(Vec, Mat, const PetscInt, void *); src/ts/utils/dmplexts.c: ierr = DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx);CHKERRQ(ierr); src/ts/utils/dmplexts.c: ierr = DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx); CHKERRQ(ierr); You'll need the PETSC_EXTERN in include/petsc/private/dmpleximpl.h and remove the duplicate prototype listing from src/ts/utils/dmplexts.c Satish > I tried to add code to DMPlexts.c and am getting this error: > > https://gitlab.com/petsc/petsc/-/jobs/636828148 > > dmplexts.c:(.text+0x1a0f): undefined reference to > `DMPlexLandFormLandau_Internal' > 1648 <https://gitlab.com/petsc/petsc/-/jobs/636828148#L1648> > > with this code: > > PETSC_INTERN PetscErrorCode DMPlexLandFormLandau_Internal(Vec a_X, Mat > JacP, const PetscInt dim, void *a_ctx); > /*@ > DMPlexLandIFunction > @*/ > PetscErrorCode DMPlexLandIFunction(TS ts,PetscReal time_dummy,Vec X,Vec > X_t,Vec F,void *actx) > { > ..... > ierr = > DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx);CHKERRQ(ierr); > > I tried with EXTERN also. Any ideas? > Thanks, > Mark >

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Re: [petsc-dev] C++ error
by Mark Adams 13 Jul '20

13 Jul '20

I think I fixed it. On Mon, Jul 13, 2020 at 6:58 PM Mark Adams <mfadams(a)lbl.gov> wrote: > I tried to add code to DMPlexts.c and am getting this error: > > https://gitlab.com/petsc/petsc/-/jobs/636828148 > > dmplexts.c:(.text+0x1a0f): undefined reference to > `DMPlexLandFormLandau_Internal' > 1648 <https://gitlab.com/petsc/petsc/-/jobs/636828148#L1648> > > with this code: > > PETSC_INTERN PetscErrorCode DMPlexLandFormLandau_Internal(Vec a_X, Mat > JacP, const PetscInt dim, void *a_ctx); > /*@ > DMPlexLandIFunction > @*/ > PetscErrorCode DMPlexLandIFunction(TS ts,PetscReal time_dummy,Vec X,Vec > X_t,Vec F,void *actx) > { > ..... > ierr = > DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx);CHKERRQ(ierr); > > I tried with EXTERN also. Any ideas? > Thanks, > Mark >

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C++ error
by Mark Adams 13 Jul '20

13 Jul '20

I tried to add code to DMPlexts.c and am getting this error: https://gitlab.com/petsc/petsc/-/jobs/636828148 dmplexts.c:(.text+0x1a0f): undefined reference to `DMPlexLandFormLandau_Internal' 1648 <https://gitlab.com/petsc/petsc/-/jobs/636828148#L1648> with this code: PETSC_INTERN PetscErrorCode DMPlexLandFormLandau_Internal(Vec a_X, Mat JacP, const PetscInt dim, void *a_ctx); /*@ DMPlexLandIFunction @*/ PetscErrorCode DMPlexLandIFunction(TS ts,PetscReal time_dummy,Vec X,Vec X_t,Vec F,void *actx) { ..... ierr = DMPlexLandFormLandau_Internal(X,ctx->J,dim,(void*)ctx);CHKERRQ(ierr); I tried with EXTERN also. Any ideas? Thanks, Mark

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Re: [petsc-dev] gcc 10
by Satish Balay 13 Jul '20

13 Jul '20

On Mon, 13 Jul 2020, Satish Balay via petsc-dev wrote: > Yeah - we fixed PETSc [maint] to not require -fallow-argument-mismatch - and use it only with externalpacakges that need it > > And we do have one test box with gfortran-10 - but the test coverage with it is minimal. [mostly no externalpacakges] One way to increase gcc/gfortran-10 test coverage: https://gitlab.com/petsc/petsc/-/commit/71e9b239c1319789e8eb99a325a7bf58f24… https://gitlab.com/petsc/petsc/-/jobs/636756484 At some point all OSX tests would have to move to gfortran-10 - but I'm hesitating to do this brew update on test boxes for now.. Satish

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Re: [petsc-dev] pipeline failure
by Mark Adams 13 Jul '20

13 Jul '20

I'm not seeing Matt's allusion ... should I put this in ts/utils and petscts.h? On Mon, Jul 13, 2020 at 4:32 PM Satish Balay <balay(a)mcs.anl.gov> wrote: > At Matt alluded to - its a circular dependency - hence the error. > > i.e DMPlexSNESComputeJacobianFEM() is a SNES function - so it can't be > called from DM sources [src/dm/impls/plex/landau/plexland.c] > > The dependency order is: > > -lpetsctao -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat > -lpetscvec -lpetscsys > > Satish > > On Mon, 13 Jul 2020, Mark Adams wrote: > > > I did add #include <petscts.h> to petscdmplex.h. THat is all that I can > see > > that could cause trouble. > > > > On Mon, Jul 13, 2020 at 4:11 PM Mark Adams <mfadams(a)lbl.gov> wrote: > > > > > THis error was in this one also, plus warnings: > > > > > > https://gitlab.com/petsc/petsc/-/jobs/636537354 > > > > > > > "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h", > > > line 21: warning: operands have incompatible types: > > > struct {pointer to long long perm, pointer to long long invPerm} ":" > > > const struct {pointer to long long perm, pointer to long long invPerm} > > > > "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h", > > > line 21: warning: operands have incompatible types: > > > struct {pointer to long long perm, pointer to long long invPerm} ":" > > > const struct {pointer to long long perm, pointer to long long invPerm} > > > > "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/petscfeimpl.h", > > > line 19: warning: linker scope was specified more than once: > "PETSCFE_SetUp" > > > > > > On Mon, Jul 13, 2020 at 4:08 PM Mark Adams <mfadams(a)lbl.gov> wrote: > > > > > >> > > >> On Mon, Jul 13, 2020 at 4:01 PM Matthew Knepley <knepley(a)gmail.com> > > >> wrote: > > >> > > >>> Do these have -single-library ? > > >>> > > >> > > >> This was in a single configuration, but it also happened in this one: > > >> > > >> > /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: > > >> undefined reference to `TSGetDM' > > >> > /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: > > >> undefined reference to `DMPlexSNESComputeJacobianFEM' > > >> collect2: error: ld returned 1 exit status > > >> gmakefile.test:185: recipe for target > > >> 'arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96' failed > > >> make[2]: *** [arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96] Error > 1 > > >> make[2]: *** Waiting for unfinished jobs.... > > >> > /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/lib/petsc/conf/test.common:26: > > >> recipe for target 'allgtest-tap' failed > > >> make[1]: *** [allgtest-tap] Error 2 > > >> GNUmakefile:17: recipe for target 'allgtests-tap' failed > > >> make: *** [allgtests-tap] Error 2 > > >> Running after_script > > >> > > >> > > >>> > > >>> Thanks, > > >>> > > >>> Matt > > >>> > > >>> On Mon, Jul 13, 2020 at 3:51 PM Mark Adams <mfadams(a)lbl.gov> wrote: > > >>> > > >>>> I am getting this error on two pipeline tests. They don't seem to > have > > >>>> anything to do with my branch. I have gotten these several times > today. > > >>>> > > >>>> > /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: > > >>>> undefined reference to `DMPlexSNESComputeJacobianFEM' > > >>>> > /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: > > >>>> undefined reference to `TSGetDM' > > >>>> collect2: error: ld returned 1 exit status > > >>>> make[2]: *** [arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240] > > >>>> Error 1 > > >>>> make[2]: *** Waiting for unfinished jobs.... > > >>>> gmakefile.test:185: recipe for target > > >>>> 'arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240' failed > > >>>> make[1]: *** [allgtest-tap] Error 2 > > >>>> > /home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/test.common:26: > > >>>> recipe for target 'allgtest-tap' failed > > >>>> GNUmakefile:17: recipe for target 'allgtests-tap' failed > > >>>> make: *** [allgtests-tap] Error 2 > > >>>> > > >>> > > >>> > > >>> -- > > >>> What most experimenters take for granted before they begin their > > >>> experiments is infinitely more interesting than any results to which > their > > >>> experiments lead. > > >>> -- Norbert Wiener > > >>> > > >>> https://www.cse.buffalo.edu/~knepley/ > > >>> <http://www.cse.buffalo.edu/~knepley/> > > >>> > > >> > > > >

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Re: [petsc-dev] pipeline failure
by Satish Balay 13 Jul '20

13 Jul '20

At Matt alluded to - its a circular dependency - hence the error. i.e DMPlexSNESComputeJacobianFEM() is a SNES function - so it can't be called from DM sources [src/dm/impls/plex/landau/plexland.c] The dependency order is: -lpetsctao -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetscsys Satish On Mon, 13 Jul 2020, Mark Adams wrote: > I did add #include <petscts.h> to petscdmplex.h. THat is all that I can see > that could cause trouble. > > On Mon, Jul 13, 2020 at 4:11 PM Mark Adams <mfadams(a)lbl.gov> wrote: > > > THis error was in this one also, plus warnings: > > > > https://gitlab.com/petsc/petsc/-/jobs/636537354 > > > > "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h", > > line 21: warning: operands have incompatible types: > > struct {pointer to long long perm, pointer to long long invPerm} ":" > > const struct {pointer to long long perm, pointer to long long invPerm} > > "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h", > > line 21: warning: operands have incompatible types: > > struct {pointer to long long perm, pointer to long long invPerm} ":" > > const struct {pointer to long long perm, pointer to long long invPerm} > > "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/petscfeimpl.h", > > line 19: warning: linker scope was specified more than once: "PETSCFE_SetUp" > > > > On Mon, Jul 13, 2020 at 4:08 PM Mark Adams <mfadams(a)lbl.gov> wrote: > > > >> > >> On Mon, Jul 13, 2020 at 4:01 PM Matthew Knepley <knepley(a)gmail.com> > >> wrote: > >> > >>> Do these have -single-library ? > >>> > >> > >> This was in a single configuration, but it also happened in this one: > >> > >> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: > >> undefined reference to `TSGetDM' > >> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: > >> undefined reference to `DMPlexSNESComputeJacobianFEM' > >> collect2: error: ld returned 1 exit status > >> gmakefile.test:185: recipe for target > >> 'arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96' failed > >> make[2]: *** [arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96] Error 1 > >> make[2]: *** Waiting for unfinished jobs.... > >> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/lib/petsc/conf/test.common:26: > >> recipe for target 'allgtest-tap' failed > >> make[1]: *** [allgtest-tap] Error 2 > >> GNUmakefile:17: recipe for target 'allgtests-tap' failed > >> make: *** [allgtests-tap] Error 2 > >> Running after_script > >> > >> > >>> > >>> Thanks, > >>> > >>> Matt > >>> > >>> On Mon, Jul 13, 2020 at 3:51 PM Mark Adams <mfadams(a)lbl.gov> wrote: > >>> > >>>> I am getting this error on two pipeline tests. They don't seem to have > >>>> anything to do with my branch. I have gotten these several times today. > >>>> > >>>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: > >>>> undefined reference to `DMPlexSNESComputeJacobianFEM' > >>>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: > >>>> undefined reference to `TSGetDM' > >>>> collect2: error: ld returned 1 exit status > >>>> make[2]: *** [arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240] > >>>> Error 1 > >>>> make[2]: *** Waiting for unfinished jobs.... > >>>> gmakefile.test:185: recipe for target > >>>> 'arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240' failed > >>>> make[1]: *** [allgtest-tap] Error 2 > >>>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/test.common:26: > >>>> recipe for target 'allgtest-tap' failed > >>>> GNUmakefile:17: recipe for target 'allgtests-tap' failed > >>>> make: *** [allgtests-tap] Error 2 > >>>> > >>> > >>> > >>> -- > >>> What most experimenters take for granted before they begin their > >>> experiments is infinitely more interesting than any results to which their > >>> experiments lead. > >>> -- Norbert Wiener > >>> > >>> https://www.cse.buffalo.edu/~knepley/ > >>> <http://www.cse.buffalo.edu/~knepley/> > >>> > >> >

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Re: [petsc-dev] pipeline failure
by Mark Adams 13 Jul '20

13 Jul '20

I did add #include <petscts.h> to petscdmplex.h. THat is all that I can see that could cause trouble. On Mon, Jul 13, 2020 at 4:11 PM Mark Adams <mfadams(a)lbl.gov> wrote: > THis error was in this one also, plus warnings: > > https://gitlab.com/petsc/petsc/-/jobs/636537354 > > "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h", > line 21: warning: operands have incompatible types: > struct {pointer to long long perm, pointer to long long invPerm} ":" > const struct {pointer to long long perm, pointer to long long invPerm} > "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h", > line 21: warning: operands have incompatible types: > struct {pointer to long long perm, pointer to long long invPerm} ":" > const struct {pointer to long long perm, pointer to long long invPerm} > "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/petscfeimpl.h", > line 19: warning: linker scope was specified more than once: "PETSCFE_SetUp" > > On Mon, Jul 13, 2020 at 4:08 PM Mark Adams <mfadams(a)lbl.gov> wrote: > >> >> On Mon, Jul 13, 2020 at 4:01 PM Matthew Knepley <knepley(a)gmail.com> >> wrote: >> >>> Do these have -single-library ? >>> >> >> This was in a single configuration, but it also happened in this one: >> >> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: >> undefined reference to `TSGetDM' >> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: >> undefined reference to `DMPlexSNESComputeJacobianFEM' >> collect2: error: ld returned 1 exit status >> gmakefile.test:185: recipe for target >> 'arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96' failed >> make[2]: *** [arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96] Error 1 >> make[2]: *** Waiting for unfinished jobs.... >> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/lib/petsc/conf/test.common:26: >> recipe for target 'allgtest-tap' failed >> make[1]: *** [allgtest-tap] Error 2 >> GNUmakefile:17: recipe for target 'allgtests-tap' failed >> make: *** [allgtests-tap] Error 2 >> Running after_script >> >> >>> >>> Thanks, >>> >>> Matt >>> >>> On Mon, Jul 13, 2020 at 3:51 PM Mark Adams <mfadams(a)lbl.gov> wrote: >>> >>>> I am getting this error on two pipeline tests. They don't seem to have >>>> anything to do with my branch. I have gotten these several times today. >>>> >>>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: >>>> undefined reference to `DMPlexSNESComputeJacobianFEM' >>>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: >>>> undefined reference to `TSGetDM' >>>> collect2: error: ld returned 1 exit status >>>> make[2]: *** [arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240] >>>> Error 1 >>>> make[2]: *** Waiting for unfinished jobs.... >>>> gmakefile.test:185: recipe for target >>>> 'arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240' failed >>>> make[1]: *** [allgtest-tap] Error 2 >>>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/test.common:26: >>>> recipe for target 'allgtest-tap' failed >>>> GNUmakefile:17: recipe for target 'allgtests-tap' failed >>>> make: *** [allgtests-tap] Error 2 >>>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >>> https://www.cse.buffalo.edu/~knepley/ >>> <http://www.cse.buffalo.edu/~knepley/> >>> >>

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Re: [petsc-dev] pipeline failure
by Mark Adams 13 Jul '20

13 Jul '20

THis error was in this one also, plus warnings: https://gitlab.com/petsc/petsc/-/jobs/636537354 "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h", line 21: warning: operands have incompatible types: struct {pointer to long long perm, pointer to long long invPerm} ":" const struct {pointer to long long perm, pointer to long long invPerm} "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h", line 21: warning: operands have incompatible types: struct {pointer to long long perm, pointer to long long invPerm} ":" const struct {pointer to long long perm, pointer to long long invPerm} "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/petscfeimpl.h", line 19: warning: linker scope was specified more than once: "PETSCFE_SetUp" On Mon, Jul 13, 2020 at 4:08 PM Mark Adams <mfadams(a)lbl.gov> wrote: > > On Mon, Jul 13, 2020 at 4:01 PM Matthew Knepley <knepley(a)gmail.com> wrote: > >> Do these have -single-library ? >> > > This was in a single configuration, but it also happened in this one: > > /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: > undefined reference to `TSGetDM' > /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: > undefined reference to `DMPlexSNESComputeJacobianFEM' > collect2: error: ld returned 1 exit status > gmakefile.test:185: recipe for target > 'arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96' failed > make[2]: *** [arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96] Error 1 > make[2]: *** Waiting for unfinished jobs.... > /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/lib/petsc/conf/test.common:26: > recipe for target 'allgtest-tap' failed > make[1]: *** [allgtest-tap] Error 2 > GNUmakefile:17: recipe for target 'allgtests-tap' failed > make: *** [allgtests-tap] Error 2 > Running after_script > > >> >> Thanks, >> >> Matt >> >> On Mon, Jul 13, 2020 at 3:51 PM Mark Adams <mfadams(a)lbl.gov> wrote: >> >>> I am getting this error on two pipeline tests. They don't seem to have >>> anything to do with my branch. I have gotten these several times today. >>> >>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: >>> undefined reference to `DMPlexSNESComputeJacobianFEM' >>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: >>> undefined reference to `TSGetDM' >>> collect2: error: ld returned 1 exit status >>> make[2]: *** [arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240] Error >>> 1 >>> make[2]: *** Waiting for unfinished jobs.... >>> gmakefile.test:185: recipe for target >>> 'arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240' failed >>> make[1]: *** [allgtest-tap] Error 2 >>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/test.common:26: >>> recipe for target 'allgtest-tap' failed >>> GNUmakefile:17: recipe for target 'allgtests-tap' failed >>> make: *** [allgtests-tap] Error 2 >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> >> https://www.cse.buffalo.edu/~knepley/ >> <http://www.cse.buffalo.edu/~knepley/> >> >

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Re: [petsc-dev] pipeline failure
by Satish Balay 13 Jul '20

13 Jul '20

Including relevant info is always useful. I guess this is the build you are referring to. https://gitlab.com/petsc/petsc/-/jobs/636537264 Ok - I tried this master and it builds fine - so the issue is with your branch. And yes - this build is with '--with-single-library=0' Satish On Mon, 13 Jul 2020, Matthew Knepley wrote: > Do these have -single-library ? > > Thanks, > > Matt > > On Mon, Jul 13, 2020 at 3:51 PM Mark Adams <mfadams(a)lbl.gov> wrote: > > > I am getting this error on two pipeline tests. They don't seem to have > > anything to do with my branch. I have gotten these several times today. > > > > /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: > > undefined reference to `DMPlexSNESComputeJacobianFEM' > > /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: > > undefined reference to `TSGetDM' > > collect2: error: ld returned 1 exit status > > make[2]: *** [arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240] Error 1 > > make[2]: *** Waiting for unfinished jobs.... > > gmakefile.test:185: recipe for target > > 'arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240' failed > > make[1]: *** [allgtest-tap] Error 2 > > /home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/test.common:26: > > recipe for target 'allgtest-tap' failed > > GNUmakefile:17: recipe for target 'allgtests-tap' failed > > make: *** [allgtests-tap] Error 2 > > > > >

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Re: [petsc-dev] pipeline failure
by Mark Adams 13 Jul '20

13 Jul '20

On Mon, Jul 13, 2020 at 4:01 PM Matthew Knepley <knepley(a)gmail.com> wrote: > Do these have -single-library ? > This was in a single configuration, but it also happened in this one: /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: undefined reference to `TSGetDM' /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so: undefined reference to `DMPlexSNESComputeJacobianFEM' collect2: error: ld returned 1 exit status gmakefile.test:185: recipe for target 'arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96' failed make[2]: *** [arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96] Error 1 make[2]: *** Waiting for unfinished jobs.... /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/lib/petsc/conf/test.common:26: recipe for target 'allgtest-tap' failed make[1]: *** [allgtest-tap] Error 2 GNUmakefile:17: recipe for target 'allgtests-tap' failed make: *** [allgtests-tap] Error 2 Running after_script > > Thanks, > > Matt > > On Mon, Jul 13, 2020 at 3:51 PM Mark Adams <mfadams(a)lbl.gov> wrote: > >> I am getting this error on two pipeline tests. They don't seem to have >> anything to do with my branch. I have gotten these several times today. >> >> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: >> undefined reference to `DMPlexSNESComputeJacobianFEM' >> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so: >> undefined reference to `TSGetDM' >> collect2: error: ld returned 1 exit status >> make[2]: *** [arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240] Error 1 >> make[2]: *** Waiting for unfinished jobs.... >> gmakefile.test:185: recipe for target >> 'arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240' failed >> make[1]: *** [allgtest-tap] Error 2 >> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/test.common:26: >> recipe for target 'allgtest-tap' failed >> GNUmakefile:17: recipe for target 'allgtests-tap' failed >> make: *** [allgtests-tap] Error 2 >> > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > https://www.cse.buffalo.edu/~knepley/ > <http://www.cse.buffalo.edu/~knepley/> >

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