August 2021 - petsc-dev - mailman3.cels.anl.gov

Re: [petsc-dev] help on Summit
by Jacob Faibussowitsch 30 Aug '21

30 Aug '21

> No luck with C++14 TL;DR: you need to have host and device compiler either both using c++17 or neither using c++17. Long version: C++17 among other things changed how static constexpr member variables for classes worked. Previously if I had a class with a static constexpr member variable I would have to not only declare it inline within the class, but also define it within an executable otherwise the variable would not actually have any physical memory address: // foo.hpp class foo { static constexpr int bar = 5; }; // foo.cpp int foo::bar; In c++17 however this changed because you can have static “inline” variables. All this does is force the compiler define the variable for you instead. The issue of course is that static constexpr implicitly makes that variable inline in c++17. So to sum it up: 1. The c++17 compiler (nvcc) sees the static constexpr variable, goes “hmm ok I will define this in some undefined location”. 2. The c++11/14 compiler comes along, sees your hand-coded definition of the variable and goes “ah but I think I’ve seen this before, I’ll ignore it”. This silent rejection is due to the hand-coded definition idiom being deprecated from c++17 onwards. Stupid, I know. 2. The linker (driven by the c++11/14 compiler since PETSc links using the host compiler) comes along and now suddenly cannot find the literal definition, because it doesn’t know what the c++17 did. Disaster! Best regards, Jacob Faibussowitsch (Jacob Fai - booss - oh - vitch) > On Aug 30, 2021, at 10:12, Mark Adams <mfadams(a)lbl.gov> wrote: > > No luck with C++14 > > CUDAC arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o > CUDAC.dep arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o > CLINKER arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3 > arch-summit-hypre-cuda-dbg/obj/sys/objects/device/impls/cupm/cuda/cupmcontext.o:(.rodata._ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE[_ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE]+0x0): multiple definition of `Petsc::CUPMInterface<(Petsc::CUPMDeviceKind)0>::cupmStreamNonBlocking' > arch-summit-hypre-cuda-dbg/obj/sys/objects/device/interface/cupminterface.o:(.rodata+0x44): first defined here > /usr/bin/ld: link errors found, deleting executable `arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3' > collect2: error: ld returned 1 exit status > gmake[3]: *** [gmakefile:113: arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3] Error 1 > gmake[2]: *** [/gpfs/alpine/csc314/scratch/adams/petsc2/lib/petsc/conf/rules:50: libs] Error 2 > **************************ERROR************************************* > Error during compile, check arch-summit-hypre-cuda-dbg/lib/petsc/conf/make.log > Send it and arch-summit-hypre-cuda-dbg/lib/petsc/conf/configure.log to petsc-maint(a)mcs.anl.gov <mailto:[email protected]> > ******************************************************************** > gmake[1]: *** [makefile:40: all] Error 1 > > On Mon, Aug 30, 2021 at 10:50 AM Mark Adams <mfadams(a)lbl.gov <mailto:[email protected]>> wrote: > Stefano suggested C++14 in configure. I was using C++11. > > On Mon, Aug 30, 2021 at 10:46 AM Junchao Zhang <junchao.zhang(a)gmail.com <mailto:[email protected]>> wrote: > Petsc::CUPMInterface > @Jacob Faibussowitsch <mailto:[email protected]> > --Junchao Zhang > > > On Mon, Aug 30, 2021 at 9:35 AM Mark Adams <mfadams(a)lbl.gov <mailto:[email protected]>> wrote: > I was running fine this AM and am bouncing between modules to help two apps (ECP milestone season) at the same time and something broke. I did update main and I get the same error in main and a hypre branch of Stefano's. > I started with a clean build and checked my modules... > Any ideas? > > Thanks, > Mark > > CC arch-summit-hypre-cuda-dbg/obj/tao/interface/taosolver.o > CC arch-summit-hypre-cuda-dbg/obj/ts/interface/ts.o > CUDAC arch-summit-hypre-cuda-dbg/obj/mat/impls/dense/seq/cuda/densecuda.o > CUDAC.dep arch-summit-hypre-cuda-dbg/obj/mat/impls/dense/seq/cuda/densecuda.o > CUDAC arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparseband.o > CUDAC.dep arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparseband.o > CUDAC arch-summit-hypre-cuda-dbg/obj/ts/utils/dmplexlandau/cuda/landaucu.o > CUDAC.dep arch-summit-hypre-cuda-dbg/obj/ts/utils/dmplexlandau/cuda/landaucu.o > CUDAC arch-summit-hypre-cuda-dbg/obj/vec/vec/impls/seq/seqcuda/veccuda2.o > CUDAC.dep arch-summit-hypre-cuda-dbg/obj/vec/vec/impls/seq/seqcuda/veccuda2.o > CUDAC arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.o > CUDAC.dep arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.o > CUDAC arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparse.o > CUDAC.dep arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparse.o > CUDAC arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o > CUDAC.dep arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o > CLINKER arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3 > arch-summit-hypre-cuda-dbg/obj/sys/objects/device/impls/cupm/cuda/cupmcontext.o:(.rodata._ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE[_ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE]+0x0): multiple definition of `Petsc::CUPMInterface<(Petsc::CUPMDeviceKind)0>::cupmStreamNonBlocking' > arch-summit-hypre-cuda-dbg/obj/sys/objects/device/interface/cupminterface.o:(.rodata+0x44): first defined here > /usr/bin/ld: link errors found, deleting executable `arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3' > collect2: error: ld returned 1 exit status > gmake[3]: *** [gmakefile:113: arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3] Error 1 > gmake[2]: *** [/gpfs/alpine/csc314/scratch/adams/petsc2/lib/petsc/conf/rules:50: libs] Error 2 > **************************ERROR************************************* > Error during compile, check arch-summit-hypre-cuda-dbg/lib/petsc/conf/make.log > Send it and arch-summit-hypre-cuda-dbg/lib/petsc/conf/configure.log to petsc-maint(a)mcs.anl.gov <mailto:[email protected]> > ******************************************************************** > gmake[1]: *** [makefile:40: all] Error 1 > make: *** [GNUmakefile:9: all] Error 2

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Re: [petsc-dev] help on Summit
by Mark Adams 30 Aug '21

30 Aug '21

No luck with C++14 CUDAC arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o CUDAC.dep arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o CLINKER arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3 arch-summit-hypre-cuda-dbg/obj/sys/objects/device/impls/cupm/cuda/cupmcontext.o:(.rodata._ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE[_ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE]+0x0): multiple definition of `Petsc::CUPMInterface<(Petsc::CUPMDeviceKind)0>::cupmStreamNonBlocking' arch-summit-hypre-cuda-dbg/obj/sys/objects/device/interface/cupminterface.o:(.rodata+0x44): first defined here /usr/bin/ld: link errors found, deleting executable `arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3' collect2: error: ld returned 1 exit status gmake[3]: *** [gmakefile:113: arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3] Error 1 gmake[2]: *** [/gpfs/alpine/csc314/scratch/adams/petsc2/lib/petsc/conf/rules:50: libs] Error 2 **************************ERROR************************************* Error during compile, check arch-summit-hypre-cuda-dbg/lib/petsc/conf/make.log Send it and arch-summit-hypre-cuda-dbg/lib/petsc/conf/configure.log to petsc-maint(a)mcs.anl.gov ******************************************************************** gmake[1]: *** [makefile:40: all] Error 1 On Mon, Aug 30, 2021 at 10:50 AM Mark Adams <mfadams(a)lbl.gov> wrote: > Stefano suggested C++14 in configure. I was using C++11. > > On Mon, Aug 30, 2021 at 10:46 AM Junchao Zhang <junchao.zhang(a)gmail.com> > wrote: > >> Petsc::CUPMInterface >> @Jacob Faibussowitsch <jacob.fai(a)gmail.com> >> --Junchao Zhang >> >> >> On Mon, Aug 30, 2021 at 9:35 AM Mark Adams <mfadams(a)lbl.gov> wrote: >> >>> I was running fine this AM and am bouncing between modules to help two >>> apps (ECP milestone season) at the same time and something broke. I did >>> update main and I get the same error in main and a hypre branch of >>> Stefano's. >>> I started with a clean build and checked my modules... >>> Any ideas? >>> >>> Thanks, >>> Mark >>> >>> CC arch-summit-hypre-cuda-dbg/obj/tao/interface/taosolver.o >>> CC arch-summit-hypre-cuda-dbg/obj/ts/interface/ts.o >>> CUDAC >>> arch-summit-hypre-cuda-dbg/obj/mat/impls/dense/seq/cuda/densecuda.o >>> CUDAC.dep >>> arch-summit-hypre-cuda-dbg/obj/mat/impls/dense/seq/cuda/densecuda.o >>> CUDAC >>> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparseband.o >>> CUDAC.dep >>> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparseband.o >>> CUDAC >>> arch-summit-hypre-cuda-dbg/obj/ts/utils/dmplexlandau/cuda/landaucu.o >>> CUDAC.dep >>> arch-summit-hypre-cuda-dbg/obj/ts/utils/dmplexlandau/cuda/landaucu.o >>> CUDAC >>> arch-summit-hypre-cuda-dbg/obj/vec/vec/impls/seq/seqcuda/veccuda2.o >>> CUDAC.dep >>> arch-summit-hypre-cuda-dbg/obj/vec/vec/impls/seq/seqcuda/veccuda2.o >>> CUDAC >>> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.o >>> CUDAC.dep >>> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.o >>> CUDAC >>> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparse.o >>> CUDAC.dep >>> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparse.o >>> CUDAC >>> arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o >>> CUDAC.dep >>> arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o >>> CLINKER arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3 >>> arch-summit-hypre-cuda-dbg/obj/sys/objects/device/impls/cupm/cuda/cupmcontext.o:(.rodata._ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE[_ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE]+0x0): >>> multiple definition of >>> `Petsc::CUPMInterface<(Petsc::CUPMDeviceKind)0>::cupmStreamNonBlocking' >>> arch-summit-hypre-cuda-dbg/obj/sys/objects/device/interface/cupminterface.o:(.rodata+0x44): >>> first defined here >>> /usr/bin/ld: link errors found, deleting executable >>> `arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3' >>> collect2: error: ld returned 1 exit status >>> gmake[3]: *** [gmakefile:113: >>> arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3] Error 1 >>> gmake[2]: *** >>> [/gpfs/alpine/csc314/scratch/adams/petsc2/lib/petsc/conf/rules:50: libs] >>> Error 2 >>> **************************ERROR************************************* >>> Error during compile, check >>> arch-summit-hypre-cuda-dbg/lib/petsc/conf/make.log >>> Send it and arch-summit-hypre-cuda-dbg/lib/petsc/conf/configure.log to >>> petsc-maint(a)mcs.anl.gov >>> ******************************************************************** >>> gmake[1]: *** [makefile:40: all] Error 1 >>> make: *** [GNUmakefile:9: all] Error 2 >>> >>

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Re: [petsc-dev] help on Summit
by Mark Adams 30 Aug '21

30 Aug '21

Stefano suggested C++14 in configure. I was using C++11. On Mon, Aug 30, 2021 at 10:46 AM Junchao Zhang <junchao.zhang(a)gmail.com> wrote: > Petsc::CUPMInterface > @Jacob Faibussowitsch <jacob.fai(a)gmail.com> > --Junchao Zhang > > > On Mon, Aug 30, 2021 at 9:35 AM Mark Adams <mfadams(a)lbl.gov> wrote: > >> I was running fine this AM and am bouncing between modules to help two >> apps (ECP milestone season) at the same time and something broke. I did >> update main and I get the same error in main and a hypre branch of >> Stefano's. >> I started with a clean build and checked my modules... >> Any ideas? >> >> Thanks, >> Mark >> >> CC arch-summit-hypre-cuda-dbg/obj/tao/interface/taosolver.o >> CC arch-summit-hypre-cuda-dbg/obj/ts/interface/ts.o >> CUDAC >> arch-summit-hypre-cuda-dbg/obj/mat/impls/dense/seq/cuda/densecuda.o >> CUDAC.dep >> arch-summit-hypre-cuda-dbg/obj/mat/impls/dense/seq/cuda/densecuda.o >> CUDAC >> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparseband.o >> CUDAC.dep >> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparseband.o >> CUDAC >> arch-summit-hypre-cuda-dbg/obj/ts/utils/dmplexlandau/cuda/landaucu.o >> CUDAC.dep >> arch-summit-hypre-cuda-dbg/obj/ts/utils/dmplexlandau/cuda/landaucu.o >> CUDAC >> arch-summit-hypre-cuda-dbg/obj/vec/vec/impls/seq/seqcuda/veccuda2.o >> CUDAC.dep >> arch-summit-hypre-cuda-dbg/obj/vec/vec/impls/seq/seqcuda/veccuda2.o >> CUDAC >> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.o >> CUDAC.dep >> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.o >> CUDAC >> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparse.o >> CUDAC.dep >> arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparse.o >> CUDAC >> arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o >> CUDAC.dep >> arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o >> CLINKER arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3 >> arch-summit-hypre-cuda-dbg/obj/sys/objects/device/impls/cupm/cuda/cupmcontext.o:(.rodata._ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE[_ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE]+0x0): >> multiple definition of >> `Petsc::CUPMInterface<(Petsc::CUPMDeviceKind)0>::cupmStreamNonBlocking' >> arch-summit-hypre-cuda-dbg/obj/sys/objects/device/interface/cupminterface.o:(.rodata+0x44): >> first defined here >> /usr/bin/ld: link errors found, deleting executable >> `arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3' >> collect2: error: ld returned 1 exit status >> gmake[3]: *** [gmakefile:113: >> arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3] Error 1 >> gmake[2]: *** >> [/gpfs/alpine/csc314/scratch/adams/petsc2/lib/petsc/conf/rules:50: libs] >> Error 2 >> **************************ERROR************************************* >> Error during compile, check >> arch-summit-hypre-cuda-dbg/lib/petsc/conf/make.log >> Send it and arch-summit-hypre-cuda-dbg/lib/petsc/conf/configure.log to >> petsc-maint(a)mcs.anl.gov >> ******************************************************************** >> gmake[1]: *** [makefile:40: all] Error 1 >> make: *** [GNUmakefile:9: all] Error 2 >> >

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Re: [petsc-dev] help on Summit
by Junchao Zhang 30 Aug '21

30 Aug '21

Petsc::CUPMInterface @Jacob Faibussowitsch <jacob.fai(a)gmail.com> --Junchao Zhang On Mon, Aug 30, 2021 at 9:35 AM Mark Adams <mfadams(a)lbl.gov> wrote: > I was running fine this AM and am bouncing between modules to help two > apps (ECP milestone season) at the same time and something broke. I did > update main and I get the same error in main and a hypre branch of > Stefano's. > I started with a clean build and checked my modules... > Any ideas? > > Thanks, > Mark > > CC arch-summit-hypre-cuda-dbg/obj/tao/interface/taosolver.o > CC arch-summit-hypre-cuda-dbg/obj/ts/interface/ts.o > CUDAC > arch-summit-hypre-cuda-dbg/obj/mat/impls/dense/seq/cuda/densecuda.o > CUDAC.dep > arch-summit-hypre-cuda-dbg/obj/mat/impls/dense/seq/cuda/densecuda.o > CUDAC > arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparseband.o > CUDAC.dep > arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparseband.o > CUDAC > arch-summit-hypre-cuda-dbg/obj/ts/utils/dmplexlandau/cuda/landaucu.o > CUDAC.dep > arch-summit-hypre-cuda-dbg/obj/ts/utils/dmplexlandau/cuda/landaucu.o > CUDAC > arch-summit-hypre-cuda-dbg/obj/vec/vec/impls/seq/seqcuda/veccuda2.o > CUDAC.dep > arch-summit-hypre-cuda-dbg/obj/vec/vec/impls/seq/seqcuda/veccuda2.o > CUDAC > arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.o > CUDAC.dep > arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.o > CUDAC > arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparse.o > CUDAC.dep > arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparse.o > CUDAC > arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o > CUDAC.dep > arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o > CLINKER arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3 > arch-summit-hypre-cuda-dbg/obj/sys/objects/device/impls/cupm/cuda/cupmcontext.o:(.rodata._ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE[_ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE]+0x0): > multiple definition of > `Petsc::CUPMInterface<(Petsc::CUPMDeviceKind)0>::cupmStreamNonBlocking' > arch-summit-hypre-cuda-dbg/obj/sys/objects/device/interface/cupminterface.o:(.rodata+0x44): > first defined here > /usr/bin/ld: link errors found, deleting executable > `arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3' > collect2: error: ld returned 1 exit status > gmake[3]: *** [gmakefile:113: > arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3] Error 1 > gmake[2]: *** > [/gpfs/alpine/csc314/scratch/adams/petsc2/lib/petsc/conf/rules:50: libs] > Error 2 > **************************ERROR************************************* > Error during compile, check > arch-summit-hypre-cuda-dbg/lib/petsc/conf/make.log > Send it and arch-summit-hypre-cuda-dbg/lib/petsc/conf/configure.log to > petsc-maint(a)mcs.anl.gov > ******************************************************************** > gmake[1]: *** [makefile:40: all] Error 1 > make: *** [GNUmakefile:9: all] Error 2 >

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help on Summit
by Mark Adams 30 Aug '21

30 Aug '21

I was running fine this AM and am bouncing between modules to help two apps (ECP milestone season) at the same time and something broke. I did update main and I get the same error in main and a hypre branch of Stefano's. I started with a clean build and checked my modules... Any ideas? Thanks, Mark CC arch-summit-hypre-cuda-dbg/obj/tao/interface/taosolver.o CC arch-summit-hypre-cuda-dbg/obj/ts/interface/ts.o CUDAC arch-summit-hypre-cuda-dbg/obj/mat/impls/dense/seq/cuda/densecuda.o CUDAC.dep arch-summit-hypre-cuda-dbg/obj/mat/impls/dense/seq/cuda/densecuda.o CUDAC arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparseband.o CUDAC.dep arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparseband.o CUDAC arch-summit-hypre-cuda-dbg/obj/ts/utils/dmplexlandau/cuda/landaucu.o CUDAC.dep arch-summit-hypre-cuda-dbg/obj/ts/utils/dmplexlandau/cuda/landaucu.o CUDAC arch-summit-hypre-cuda-dbg/obj/vec/vec/impls/seq/seqcuda/veccuda2.o CUDAC.dep arch-summit-hypre-cuda-dbg/obj/vec/vec/impls/seq/seqcuda/veccuda2.o CUDAC arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.o CUDAC.dep arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.o CUDAC arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparse.o CUDAC.dep arch-summit-hypre-cuda-dbg/obj/mat/impls/aij/seq/seqcusparse/aijcusparse.o CUDAC arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o CUDAC.dep arch-summit-hypre-cuda-dbg/obj/vec/is/sf/impls/basic/cuda/sfcuda.o CLINKER arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3 arch-summit-hypre-cuda-dbg/obj/sys/objects/device/impls/cupm/cuda/cupmcontext.o:(.rodata._ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE[_ZN5Petsc13CUPMInterfaceILNS_14CUPMDeviceKindE0EE21cupmStreamNonBlockingE]+0x0): multiple definition of `Petsc::CUPMInterface<(Petsc::CUPMDeviceKind)0>::cupmStreamNonBlocking' arch-summit-hypre-cuda-dbg/obj/sys/objects/device/interface/cupminterface.o:(.rodata+0x44): first defined here /usr/bin/ld: link errors found, deleting executable `arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3' collect2: error: ld returned 1 exit status gmake[3]: *** [gmakefile:113: arch-summit-hypre-cuda-dbg/lib/libpetsc.so.3.015.3] Error 1 gmake[2]: *** [/gpfs/alpine/csc314/scratch/adams/petsc2/lib/petsc/conf/rules:50: libs] Error 2 **************************ERROR************************************* Error during compile, check arch-summit-hypre-cuda-dbg/lib/petsc/conf/make.log Send it and arch-summit-hypre-cuda-dbg/lib/petsc/conf/configure.log to petsc-maint(a)mcs.anl.gov ******************************************************************** gmake[1]: *** [makefile:40: all] Error 1 make: *** [GNUmakefile:9: all] Error 2

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Re: [petsc-dev] git repo question
by Mark Adams 27 Aug '21

27 Aug '21

On Fri, Aug 27, 2021 at 11:01 AM Satish Balay <balay(a)mcs.anl.gov> wrote: > Perhaps 'git branch --unset-upstream' got invoked somehow? > > You can check .git/config to see if you have an entry: > > >>> > [branch "adams/landau-multiple-grids"] > remote = origin > merge = refs/heads/adams/landau-multiple-grids > <<< > > If not - you can fix by: > > git branch -u origin/adams/landau-multiple-grids > that worked. I think I may have forgotten -u and did: git push origin +adams/landau-multiple-grids Thanks, Mark > > Satish > > On Fri, 27 Aug 2021, Mark Adams wrote: > > > I have a branch with and MR in the repo, but my branch does not seem to > > know it is on origin: > > > > (base) 10:42 *adams/landau-multiple-grids* ~/Codes/petsc$ git status > > On branch adams/landau-multiple-grids > > Untracked files: > > (use "git add <file>..." to include in what will be committed) > > src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu.bak > > ... > > > > > > There is no "=" in the prompt and no, eg, "Your branch is up to date with > > 'origin/adams/landau-ex2-gpu-paper'." > > > > There seems to be something wrong with this branch. > > Any idea what is wrong? > > > > Thanks, > > Mark > > > >

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Re: [petsc-dev] git repo question
by Satish Balay 27 Aug '21

27 Aug '21

Perhaps 'git branch --unset-upstream' got invoked somehow? You can check .git/config to see if you have an entry: >>> [branch "adams/landau-multiple-grids"] remote = origin merge = refs/heads/adams/landau-multiple-grids <<< If not - you can fix by: git branch -u origin/adams/landau-multiple-grids Satish On Fri, 27 Aug 2021, Mark Adams wrote: > I have a branch with and MR in the repo, but my branch does not seem to > know it is on origin: > > (base) 10:42 *adams/landau-multiple-grids* ~/Codes/petsc$ git status > On branch adams/landau-multiple-grids > Untracked files: > (use "git add <file>..." to include in what will be committed) > src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu.bak > ... > > > There is no "=" in the prompt and no, eg, "Your branch is up to date with > 'origin/adams/landau-ex2-gpu-paper'." > > There seems to be something wrong with this branch. > Any idea what is wrong? > > Thanks, > Mark >

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git repo question
by Mark Adams 27 Aug '21

27 Aug '21

I have a branch with and MR in the repo, but my branch does not seem to know it is on origin: (base) 10:42 *adams/landau-multiple-grids* ~/Codes/petsc$ git status On branch adams/landau-multiple-grids Untracked files: (use "git add <file>..." to include in what will be committed) src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu.bak ... There is no "=" in the prompt and no, eg, "Your branch is up to date with 'origin/adams/landau-ex2-gpu-paper'." There seems to be something wrong with this branch. Any idea what is wrong? Thanks, Mark

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Re: [petsc-dev] Is this a bug in test generation?
by Scott Kruger 20 Aug '21

20 Aug '21

Separate tests require separate names. Requiring the suffix to be in the tests is not a bug or a limitation, but rather a requirement. This does require an `output_file:` at the testset level. Scott On 2021-08-20 12:57, Pierre Jolivet did write: > That’s a long-standing issue that I personally bypass by setting the suffix in the test instead of at the testset scope. > But maybe that’s not working for you either? > > Thanks, > Pierre > > > On 20 Aug 2021, at 12:43 PM, Stefano Zampini <stefano.zampini(a)gmail.com> wrote: > > > > Scott > > > > This test is specified as > > > > testset: > > suffix: expl > > nsize: {{1 2}} > > filter: grep -v "MPI processes" | grep -v " type:" | grep -v "Mat Object" > > args: -ksp_converged_reason -view_explicit_mat -pc_type none -ksp_type {{cg gmres}} > > test: > > args: -mat_type aij > > test: > > requires: hypre > > args: -mat_type hypre > > > > It triggers an error here https://gitlab.com/petsc/petsc/-/jobs/1519558357 <https://gitlab.com/petsc/petsc/-/jobs/1519558357>, with a CI configuration without hypre. > > Other testset instances works fine if any “require:" is both specified in the testset body and in the specific test. > > Is this supposed to work? > > > > Thanks > > Stefano > -- Scott Kruger Tech-X Corporation kruger(a)txcorp.com 5621 Arapahoe Ave, Suite A Phone: (720) 466-3196 Boulder, CO 80303 Fax: (303) 448-7756

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Re: [petsc-dev] Is this a bug in test generation?
by Pierre Jolivet 20 Aug '21

20 Aug '21

That’s a long-standing issue that I personally bypass by setting the suffix in the test instead of at the testset scope. But maybe that’s not working for you either? Thanks, Pierre > On 20 Aug 2021, at 12:43 PM, Stefano Zampini <stefano.zampini(a)gmail.com> wrote: > > Scott > > This test is specified as > > testset: > suffix: expl > nsize: {{1 2}} > filter: grep -v "MPI processes" | grep -v " type:" | grep -v "Mat Object" > args: -ksp_converged_reason -view_explicit_mat -pc_type none -ksp_type {{cg gmres}} > test: > args: -mat_type aij > test: > requires: hypre > args: -mat_type hypre > > It triggers an error here https://gitlab.com/petsc/petsc/-/jobs/1519558357 <https://gitlab.com/petsc/petsc/-/jobs/1519558357>, with a CI configuration without hypre. > Other testset instances works fine if any “require:" is both specified in the testset body and in the specific test. > Is this supposed to work? > > Thanks > Stefano

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