May 2014 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] Very long configuration time
by Nikoloutsakos Nikolaos 22 May '14

22 May '14

Hi, any success with excecutable on xeon phi? please provide ./configure arguments im very interested to use mpich on xeon phi thank you. Στις 2014-05-21 23:35, Yida Wang έγραψε: > I have to use icc since I want to run code on Intel Xeon Phi. Also, I > tried to install MPICH2 since it claims to support Intel-MIC > architecture and is open source. > > BTW, still configuring. It's faster to do it locally (both the source > code and the Intel compiler), but encountered a Fortran type length > detection error (don't remember the exact error information now, it > recommended me to "Consider setting CROSS_F77_SIZEOF_INTEGER to the > length in bytes of a Fortran INTEGER") last run. > > Thanks, > YW > > On Wed, May 21, 2014 at 4:28 PM, Jed Brown <jed(a)jedbrown.org> wrote: > >> Kenneth Raffenetti <raffenet(a)mcs.anl.gov> writes: >> >>> The Intel compilers could also be a source of slowdown. Are they >>> installed on a network filesystem? They may also call out to a >> network >>> license server each time they are invoked for a compile test. >> Does just >>> compiling a small program take a long time with icc, ifort, etc.? >> >> The system headers and libraries are also often on a network file >> system. Although moving the source tree to a local disk usually >> provides some improvement, I rarely find it getting anywhere close >> to >> the performance of a cheap laptop because most of the file accesses >> performed by the compiler are hitting the network anyway. This is >> the >> price we all pay for legacy file system semantics and dumb compiler >> architecture. I think most companies in a place to change these >> things >> do full local installs on their development boxes so that >> compilation is >> fast. And the HPC vendors wear blindfolds and put their heads in >> the >> sand. >> >> As for Intel license servers, this is the price you pay for >> anti-piracy >> measures. People that are really ticked off by this crack their >> compilers---the pirates enjoy a better user experience. Is it >> ethical >> to use a cracked version if you've already paid for the licensed >> version? >> >> Besides those issues, the Intel compiler usually takes a lot longer >> to >> compile. It's worth building with gcc and clang to compare. You >> might >> be pleasantly surprised to find that in addition to compiling >> faster, >> your code also runs faster (this is the case for several >> applications I >> work with). >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss [1] > > > > Links: > ------ > [1] https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] cannot execute binary file
by Yida Wang 21 May '14

21 May '14

Thanks a lot for your help. I will keep investigating and maybe give a follow-up later. On Wed, May 21, 2014 at 11:22 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > Sorry, I was wrong. You command line was right according to the newest > README. > I guess I am running out of ideas. > > — > Huiwei > > On May 21, 2014, at 10:19 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > Why is that? I am running 64-bit OS, it looks like i686 is a 32-bit > setting. > > > > > > On Wed, May 21, 2014 at 11:17 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > I don’t know what a cross file is either. However, after a second check, > I found that you may use ‘—host=’ wrong. > > > > According to the following link, you should force to use > ‘--host=i686-linux-gnu’ instead of ‘--host=x86_64-k1om-linux'. > > > http://lists.mcs.anl.gov/pipermail/mpich-discuss/2012-November/013363.html > > — > > Huiwei > > > > On May 21, 2014, at 10:02 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > Yes, I also observed that there's a cross file error during the > configuration phase. Actually I have no idea about what a cross file is. > Can you illustrate it a little bit? > > > > > > Thanks, > > > YW > > > > > > > > > On Wed, May 21, 2014 at 10:59 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > > Something may be wrong with the cross file, but it’s only my guess as > I’ve never compiled MPICH on a MIC myself. > > > > > > I’ve found some old discusses related to MPICH on MIC. I am listing > them just as FYI. > > > http://lists.mpich.org/pipermail/discuss/2013-July/001180.html > > > > http://lists.mcs.anl.gov/pipermail/mpich-discuss/2012-November/013377.html > > > > > > — > > > Huiwei > > > > > > On May 21, 2014, at 9:43 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > Sure. Attached please find it. > > > > > > > > Thanks, > > > > YW > > > > > > > > > > > > On Wed, May 21, 2014 at 10:40 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > > > Could you send us your config.log in mpich directory? > > > > > > > > — > > > > Huiwei > > > > > > > > On May 21, 2014, at 9:20 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > > > No. But even using root, I will get the same error. > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 10:19 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > > > > Looks like you have installed mpich under root. > > > > > Just to confirm, are you running mpiexec.hydra under root too? > > > > > — > > > > > Huiwei > > > > > > > > > > On May 21, 2014, at 9:14 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > > > > > 1. -rwxr-xr-x 1 root root 1460092 May 21 20:41 mpiexec.hydra > > > > > > 2. not a dynamic executable > > > > > > > > > > > > Thanks, > > > > > > YW > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 10:11 PM, Lu, Huiwei < > huiweilu(a)mcs.anl.gov> wrote: > > > > > > This looks more like a Linux problem rather than a MPICH problem. > > > > > > Could you give us the output of the following commands? > > > > > > 1. ls -la mpiexec.hydra > > > > > > 2. ldd -r mpiexec.hydra > > > > > > > > > > > > — > > > > > > Huiwei > > > > > > > > > > > > On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > > > > > > > The same error: > > > > > > > -bash: ./mpiexec.hydra: cannot execute binary file > > > > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang < > jczhang(a)mcs.anl.gov> wrote: > > > > > > > You can go to the directory with mpiexec.hydra, and type > ./mpiexec.hydra, to see what happens. > > > > > > > > > > > > > > --Junchao Zhang > > > > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> > wrote: > > > > > > > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 > UTC 2012 x86_64 x86_64 x86_64 GNU/Linux > > > > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang < > jczhang(a)mcs.anl.gov> wrote: > > > > > > > What is the output of "uname -a" on your machine? > > > > > > > > > > > > > > --Junchao Zhang > > > > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> > wrote: > > > > > > > Hi Guys, > > > > > > > > > > > > > > I just finished installing mpich. But when I tried to run it, > it returned "cannot execute binary file". I double checked the file type by > "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, > version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux > 2.6.16, not stripped". I am running 64-bit CentOS. > > > > > > > > > > > > > > Any ideas of this error? > > > > > > > > > > > > > > Thanks, > > > > > > > YW > > > > > > > > > > > > > > _______________________________________________ > > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > > To manage subscription options or unsubscribe: > > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > > To manage subscription options or unsubscribe: > > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > > To manage subscription options or unsubscribe: > > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > > To manage subscription options or unsubscribe: > > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > _______________________________________________ > > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > > To manage subscription options or unsubscribe: > > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > <config.log>_______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

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Re: [mpich-discuss] cannot execute binary file
by Lu, Huiwei 21 May '14

21 May '14

Sorry, I was wrong. You command line was right according to the newest README. I guess I am running out of ideas. — Huiwei On May 21, 2014, at 10:19 PM, Yida Wang <yidawa(a)gmail.com> wrote: > Why is that? I am running 64-bit OS, it looks like i686 is a 32-bit setting. > > > On Wed, May 21, 2014 at 11:17 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > I don’t know what a cross file is either. However, after a second check, I found that you may use ‘—host=’ wrong. > > According to the following link, you should force to use ‘--host=i686-linux-gnu’ instead of ‘--host=x86_64-k1om-linux'. > http://lists.mcs.anl.gov/pipermail/mpich-discuss/2012-November/013363.html > — > Huiwei > > On May 21, 2014, at 10:02 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > Yes, I also observed that there's a cross file error during the configuration phase. Actually I have no idea about what a cross file is. Can you illustrate it a little bit? > > > > Thanks, > > YW > > > > > > On Wed, May 21, 2014 at 10:59 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > Something may be wrong with the cross file, but it’s only my guess as I’ve never compiled MPICH on a MIC myself. > > > > I’ve found some old discusses related to MPICH on MIC. I am listing them just as FYI. > > http://lists.mpich.org/pipermail/discuss/2013-July/001180.html > > http://lists.mcs.anl.gov/pipermail/mpich-discuss/2012-November/013377.html > > > > — > > Huiwei > > > > On May 21, 2014, at 9:43 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > Sure. Attached please find it. > > > > > > Thanks, > > > YW > > > > > > > > > On Wed, May 21, 2014 at 10:40 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > > Could you send us your config.log in mpich directory? > > > > > > — > > > Huiwei > > > > > > On May 21, 2014, at 9:20 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > No. But even using root, I will get the same error. > > > > > > > > > > > > On Wed, May 21, 2014 at 10:19 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > > > Looks like you have installed mpich under root. > > > > Just to confirm, are you running mpiexec.hydra under root too? > > > > — > > > > Huiwei > > > > > > > > On May 21, 2014, at 9:14 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > > > 1. -rwxr-xr-x 1 root root 1460092 May 21 20:41 mpiexec.hydra > > > > > 2. not a dynamic executable > > > > > > > > > > Thanks, > > > > > YW > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 10:11 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > > > > This looks more like a Linux problem rather than a MPICH problem. > > > > > Could you give us the output of the following commands? > > > > > 1. ls -la mpiexec.hydra > > > > > 2. ldd -r mpiexec.hydra > > > > > > > > > > — > > > > > Huiwei > > > > > > > > > > On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > > > > > The same error: > > > > > > -bash: ./mpiexec.hydra: cannot execute binary file > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > > > > > > You can go to the directory with mpiexec.hydra, and type ./mpiexec.hydra, to see what happens. > > > > > > > > > > > > --Junchao Zhang > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > > > > > > What is the output of "uname -a" on your machine? > > > > > > > > > > > > --Junchao Zhang > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > Hi Guys, > > > > > > > > > > > > I just finished installing mpich. But when I tried to run it, it returned "cannot execute binary file". I double checked the file type by "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.16, not stripped". I am running 64-bit CentOS. > > > > > > > > > > > > Any ideas of this error? > > > > > > > > > > > > Thanks, > > > > > > YW > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > <config.log>_______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] cannot execute binary file
by Yida Wang 21 May '14

21 May '14

Why is that? I am running 64-bit OS, it looks like i686 is a 32-bit setting. On Wed, May 21, 2014 at 11:17 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > I don’t know what a cross file is either. However, after a second check, I > found that you may use ‘—host=’ wrong. > > According to the following link, you should force to use > ‘--host=i686-linux-gnu’ instead of ‘--host=x86_64-k1om-linux'. > http://lists.mcs.anl.gov/pipermail/mpich-discuss/2012-November/013363.html > — > Huiwei > > On May 21, 2014, at 10:02 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > Yes, I also observed that there's a cross file error during the > configuration phase. Actually I have no idea about what a cross file is. > Can you illustrate it a little bit? > > > > Thanks, > > YW > > > > > > On Wed, May 21, 2014 at 10:59 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > Something may be wrong with the cross file, but it’s only my guess as > I’ve never compiled MPICH on a MIC myself. > > > > I’ve found some old discusses related to MPICH on MIC. I am listing them > just as FYI. > > http://lists.mpich.org/pipermail/discuss/2013-July/001180.html > > > http://lists.mcs.anl.gov/pipermail/mpich-discuss/2012-November/013377.html > > > > — > > Huiwei > > > > On May 21, 2014, at 9:43 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > Sure. Attached please find it. > > > > > > Thanks, > > > YW > > > > > > > > > On Wed, May 21, 2014 at 10:40 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > > Could you send us your config.log in mpich directory? > > > > > > — > > > Huiwei > > > > > > On May 21, 2014, at 9:20 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > No. But even using root, I will get the same error. > > > > > > > > > > > > On Wed, May 21, 2014 at 10:19 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > > > Looks like you have installed mpich under root. > > > > Just to confirm, are you running mpiexec.hydra under root too? > > > > — > > > > Huiwei > > > > > > > > On May 21, 2014, at 9:14 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > > > 1. -rwxr-xr-x 1 root root 1460092 May 21 20:41 mpiexec.hydra > > > > > 2. not a dynamic executable > > > > > > > > > > Thanks, > > > > > YW > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 10:11 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > > > > This looks more like a Linux problem rather than a MPICH problem. > > > > > Could you give us the output of the following commands? > > > > > 1. ls -la mpiexec.hydra > > > > > 2. ldd -r mpiexec.hydra > > > > > > > > > > — > > > > > Huiwei > > > > > > > > > > On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > > > > > The same error: > > > > > > -bash: ./mpiexec.hydra: cannot execute binary file > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang < > jczhang(a)mcs.anl.gov> wrote: > > > > > > You can go to the directory with mpiexec.hydra, and type > ./mpiexec.hydra, to see what happens. > > > > > > > > > > > > --Junchao Zhang > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> > wrote: > > > > > > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 > UTC 2012 x86_64 x86_64 x86_64 GNU/Linux > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang < > jczhang(a)mcs.anl.gov> wrote: > > > > > > What is the output of "uname -a" on your machine? > > > > > > > > > > > > --Junchao Zhang > > > > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> > wrote: > > > > > > Hi Guys, > > > > > > > > > > > > I just finished installing mpich. But when I tried to run it, it > returned "cannot execute binary file". I double checked the file type by > "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, > version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux > 2.6.16, not stripped". I am running 64-bit CentOS. > > > > > > > > > > > > Any ideas of this error? > > > > > > > > > > > > Thanks, > > > > > > YW > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > <config.log>_______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

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Re: [mpich-discuss] cannot execute binary file
by Lu, Huiwei 21 May '14

21 May '14

I don’t know what a cross file is either. However, after a second check, I found that you may use ‘—host=’ wrong. According to the following link, you should force to use ‘--host=i686-linux-gnu’ instead of ‘--host=x86_64-k1om-linux'. http://lists.mcs.anl.gov/pipermail/mpich-discuss/2012-November/013363.html — Huiwei On May 21, 2014, at 10:02 PM, Yida Wang <yidawa(a)gmail.com> wrote: > Yes, I also observed that there's a cross file error during the configuration phase. Actually I have no idea about what a cross file is. Can you illustrate it a little bit? > > Thanks, > YW > > > On Wed, May 21, 2014 at 10:59 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > Something may be wrong with the cross file, but it’s only my guess as I’ve never compiled MPICH on a MIC myself. > > I’ve found some old discusses related to MPICH on MIC. I am listing them just as FYI. > http://lists.mpich.org/pipermail/discuss/2013-July/001180.html > http://lists.mcs.anl.gov/pipermail/mpich-discuss/2012-November/013377.html > > — > Huiwei > > On May 21, 2014, at 9:43 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > Sure. Attached please find it. > > > > Thanks, > > YW > > > > > > On Wed, May 21, 2014 at 10:40 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > Could you send us your config.log in mpich directory? > > > > — > > Huiwei > > > > On May 21, 2014, at 9:20 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > No. But even using root, I will get the same error. > > > > > > > > > On Wed, May 21, 2014 at 10:19 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > > Looks like you have installed mpich under root. > > > Just to confirm, are you running mpiexec.hydra under root too? > > > — > > > Huiwei > > > > > > On May 21, 2014, at 9:14 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > 1. -rwxr-xr-x 1 root root 1460092 May 21 20:41 mpiexec.hydra > > > > 2. not a dynamic executable > > > > > > > > Thanks, > > > > YW > > > > > > > > > > > > On Wed, May 21, 2014 at 10:11 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > > > This looks more like a Linux problem rather than a MPICH problem. > > > > Could you give us the output of the following commands? > > > > 1. ls -la mpiexec.hydra > > > > 2. ldd -r mpiexec.hydra > > > > > > > > — > > > > Huiwei > > > > > > > > On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > > > The same error: > > > > > -bash: ./mpiexec.hydra: cannot execute binary file > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > > > > > You can go to the directory with mpiexec.hydra, and type ./mpiexec.hydra, to see what happens. > > > > > > > > > > --Junchao Zhang > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > > > > > What is the output of "uname -a" on your machine? > > > > > > > > > > --Junchao Zhang > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > Hi Guys, > > > > > > > > > > I just finished installing mpich. But when I tried to run it, it returned "cannot execute binary file". I double checked the file type by "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.16, not stripped". I am running 64-bit CentOS. > > > > > > > > > > Any ideas of this error? > > > > > > > > > > Thanks, > > > > > YW > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > <config.log>_______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Error: "MPIR_Get_contextid_sparse_group(1193): Too many communicators (0/2048)"
by Balaji, Pavan 21 May '14

21 May '14

On May 21, 2014, at 6:02 PM, Ted Sariyski <tsariysk(a)craft-tech.com> wrote: > Memory limitations. With one large window all processes have to allocate memory for the objects they own as well as for objects assigned to other process. Are we talking about the same thing here? I’m referring to an MPI_Win. What objects do processes need to keep track of? — Pavan

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Re: [mpich-discuss] cannot execute binary file
by Yida Wang 21 May '14

21 May '14

Yes, I also observed that there's a cross file error during the configuration phase. Actually I have no idea about what a cross file is. Can you illustrate it a little bit? Thanks, YW On Wed, May 21, 2014 at 10:59 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > Something may be wrong with the cross file, but it’s only my guess as I’ve > never compiled MPICH on a MIC myself. > > I’ve found some old discusses related to MPICH on MIC. I am listing them > just as FYI. > http://lists.mpich.org/pipermail/discuss/2013-July/001180.html > http://lists.mcs.anl.gov/pipermail/mpich-discuss/2012-November/013377.html > > — > Huiwei > > On May 21, 2014, at 9:43 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > Sure. Attached please find it. > > > > Thanks, > > YW > > > > > > On Wed, May 21, 2014 at 10:40 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > Could you send us your config.log in mpich directory? > > > > — > > Huiwei > > > > On May 21, 2014, at 9:20 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > No. But even using root, I will get the same error. > > > > > > > > > On Wed, May 21, 2014 at 10:19 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > > Looks like you have installed mpich under root. > > > Just to confirm, are you running mpiexec.hydra under root too? > > > — > > > Huiwei > > > > > > On May 21, 2014, at 9:14 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > 1. -rwxr-xr-x 1 root root 1460092 May 21 20:41 mpiexec.hydra > > > > 2. not a dynamic executable > > > > > > > > Thanks, > > > > YW > > > > > > > > > > > > On Wed, May 21, 2014 at 10:11 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > > > This looks more like a Linux problem rather than a MPICH problem. > > > > Could you give us the output of the following commands? > > > > 1. ls -la mpiexec.hydra > > > > 2. ldd -r mpiexec.hydra > > > > > > > > — > > > > Huiwei > > > > > > > > On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > > > The same error: > > > > > -bash: ./mpiexec.hydra: cannot execute binary file > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang < > jczhang(a)mcs.anl.gov> wrote: > > > > > You can go to the directory with mpiexec.hydra, and type > ./mpiexec.hydra, to see what happens. > > > > > > > > > > --Junchao Zhang > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> > wrote: > > > > > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC > 2012 x86_64 x86_64 x86_64 GNU/Linux > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang < > jczhang(a)mcs.anl.gov> wrote: > > > > > What is the output of "uname -a" on your machine? > > > > > > > > > > --Junchao Zhang > > > > > > > > > > > > > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> > wrote: > > > > > Hi Guys, > > > > > > > > > > I just finished installing mpich. But when I tried to run it, it > returned "cannot execute binary file". I double checked the file type by > "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, > version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux > 2.6.16, not stripped". I am running 64-bit CentOS. > > > > > > > > > > Any ideas of this error? > > > > > > > > > > Thanks, > > > > > YW > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > <config.log>_______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

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Re: [mpich-discuss] cannot execute binary file
by Lu, Huiwei 21 May '14

21 May '14

Something may be wrong with the cross file, but it’s only my guess as I’ve never compiled MPICH on a MIC myself. I’ve found some old discusses related to MPICH on MIC. I am listing them just as FYI. http://lists.mpich.org/pipermail/discuss/2013-July/001180.html http://lists.mcs.anl.gov/pipermail/mpich-discuss/2012-November/013377.html — Huiwei On May 21, 2014, at 9:43 PM, Yida Wang <yidawa(a)gmail.com> wrote: > Sure. Attached please find it. > > Thanks, > YW > > > On Wed, May 21, 2014 at 10:40 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > Could you send us your config.log in mpich directory? > > — > Huiwei > > On May 21, 2014, at 9:20 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > No. But even using root, I will get the same error. > > > > > > On Wed, May 21, 2014 at 10:19 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > Looks like you have installed mpich under root. > > Just to confirm, are you running mpiexec.hydra under root too? > > — > > Huiwei > > > > On May 21, 2014, at 9:14 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > 1. -rwxr-xr-x 1 root root 1460092 May 21 20:41 mpiexec.hydra > > > 2. not a dynamic executable > > > > > > Thanks, > > > YW > > > > > > > > > On Wed, May 21, 2014 at 10:11 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > > This looks more like a Linux problem rather than a MPICH problem. > > > Could you give us the output of the following commands? > > > 1. ls -la mpiexec.hydra > > > 2. ldd -r mpiexec.hydra > > > > > > — > > > Huiwei > > > > > > On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > The same error: > > > > -bash: ./mpiexec.hydra: cannot execute binary file > > > > > > > > > > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > > > > You can go to the directory with mpiexec.hydra, and type ./mpiexec.hydra, to see what happens. > > > > > > > > --Junchao Zhang > > > > > > > > > > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux > > > > > > > > > > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > > > > What is the output of "uname -a" on your machine? > > > > > > > > --Junchao Zhang > > > > > > > > > > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > Hi Guys, > > > > > > > > I just finished installing mpich. But when I tried to run it, it returned "cannot execute binary file". I double checked the file type by "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.16, not stripped". I am running 64-bit CentOS. > > > > > > > > Any ideas of this error? > > > > > > > > Thanks, > > > > YW > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > <config.log>_______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] cannot execute binary file
by Yida Wang 21 May '14

21 May '14

Sure. Attached please find it. Thanks, YW On Wed, May 21, 2014 at 10:40 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > Could you send us your config.log in mpich directory? > > — > Huiwei > > On May 21, 2014, at 9:20 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > No. But even using root, I will get the same error. > > > > > > On Wed, May 21, 2014 at 10:19 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > Looks like you have installed mpich under root. > > Just to confirm, are you running mpiexec.hydra under root too? > > — > > Huiwei > > > > On May 21, 2014, at 9:14 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > 1. -rwxr-xr-x 1 root root 1460092 May 21 20:41 mpiexec.hydra > > > 2. not a dynamic executable > > > > > > Thanks, > > > YW > > > > > > > > > On Wed, May 21, 2014 at 10:11 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > > This looks more like a Linux problem rather than a MPICH problem. > > > Could you give us the output of the following commands? > > > 1. ls -la mpiexec.hydra > > > 2. ldd -r mpiexec.hydra > > > > > > — > > > Huiwei > > > > > > On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > > > The same error: > > > > -bash: ./mpiexec.hydra: cannot execute binary file > > > > > > > > > > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> > wrote: > > > > You can go to the directory with mpiexec.hydra, and type > ./mpiexec.hydra, to see what happens. > > > > > > > > --Junchao Zhang > > > > > > > > > > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC > 2012 x86_64 x86_64 x86_64 GNU/Linux > > > > > > > > > > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> > wrote: > > > > What is the output of "uname -a" on your machine? > > > > > > > > --Junchao Zhang > > > > > > > > > > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > Hi Guys, > > > > > > > > I just finished installing mpich. But when I tried to run it, it > returned "cannot execute binary file". I double checked the file type by > "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, > version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux > 2.6.16, not stripped". I am running 64-bit CentOS. > > > > > > > > Any ideas of this error? > > > > > > > > Thanks, > > > > YW > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

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Re: [mpich-discuss] cannot execute binary file
by Lu, Huiwei 21 May '14

21 May '14

Could you send us your config.log in mpich directory? — Huiwei On May 21, 2014, at 9:20 PM, Yida Wang <yidawa(a)gmail.com> wrote: > No. But even using root, I will get the same error. > > > On Wed, May 21, 2014 at 10:19 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > Looks like you have installed mpich under root. > Just to confirm, are you running mpiexec.hydra under root too? > — > Huiwei > > On May 21, 2014, at 9:14 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > 1. -rwxr-xr-x 1 root root 1460092 May 21 20:41 mpiexec.hydra > > 2. not a dynamic executable > > > > Thanks, > > YW > > > > > > On Wed, May 21, 2014 at 10:11 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > > This looks more like a Linux problem rather than a MPICH problem. > > Could you give us the output of the following commands? > > 1. ls -la mpiexec.hydra > > 2. ldd -r mpiexec.hydra > > > > — > > Huiwei > > > > On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > The same error: > > > -bash: ./mpiexec.hydra: cannot execute binary file > > > > > > > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > > > You can go to the directory with mpiexec.hydra, and type ./mpiexec.hydra, to see what happens. > > > > > > --Junchao Zhang > > > > > > > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux > > > > > > > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > > > What is the output of "uname -a" on your machine? > > > > > > --Junchao Zhang > > > > > > > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > Hi Guys, > > > > > > I just finished installing mpich. But when I tried to run it, it returned "cannot execute binary file". I double checked the file type by "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.16, not stripped". I am running 64-bit CentOS. > > > > > > Any ideas of this error? > > > > > > Thanks, > > > YW > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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