May 2014 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] cannot execute binary file
by Yida Wang 21 May '14

21 May '14

No. But even using root, I will get the same error. On Wed, May 21, 2014 at 10:19 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > Looks like you have installed mpich under root. > Just to confirm, are you running mpiexec.hydra under root too? > — > Huiwei > > On May 21, 2014, at 9:14 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > 1. -rwxr-xr-x 1 root root 1460092 May 21 20:41 mpiexec.hydra > > 2. not a dynamic executable > > > > Thanks, > > YW > > > > > > On Wed, May 21, 2014 at 10:11 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> > wrote: > > This looks more like a Linux problem rather than a MPICH problem. > > Could you give us the output of the following commands? > > 1. ls -la mpiexec.hydra > > 2. ldd -r mpiexec.hydra > > > > — > > Huiwei > > > > On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > > > The same error: > > > -bash: ./mpiexec.hydra: cannot execute binary file > > > > > > > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> > wrote: > > > You can go to the directory with mpiexec.hydra, and type > ./mpiexec.hydra, to see what happens. > > > > > > --Junchao Zhang > > > > > > > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC > 2012 x86_64 x86_64 x86_64 GNU/Linux > > > > > > > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> > wrote: > > > What is the output of "uname -a" on your machine? > > > > > > --Junchao Zhang > > > > > > > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > Hi Guys, > > > > > > I just finished installing mpich. But when I tried to run it, it > returned "cannot execute binary file". I double checked the file type by > "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, > version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux > 2.6.16, not stripped". I am running 64-bit CentOS. > > > > > > Any ideas of this error? > > > > > > Thanks, > > > YW > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

1 0

Re: [mpich-discuss] cannot execute binary file
by Lu, Huiwei 21 May '14

21 May '14

Looks like you have installed mpich under root. Just to confirm, are you running mpiexec.hydra under root too? — Huiwei On May 21, 2014, at 9:14 PM, Yida Wang <yidawa(a)gmail.com> wrote: > 1. -rwxr-xr-x 1 root root 1460092 May 21 20:41 mpiexec.hydra > 2. not a dynamic executable > > Thanks, > YW > > > On Wed, May 21, 2014 at 10:11 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > This looks more like a Linux problem rather than a MPICH problem. > Could you give us the output of the following commands? > 1. ls -la mpiexec.hydra > 2. ldd -r mpiexec.hydra > > — > Huiwei > > On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > The same error: > > -bash: ./mpiexec.hydra: cannot execute binary file > > > > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > > You can go to the directory with mpiexec.hydra, and type ./mpiexec.hydra, to see what happens. > > > > --Junchao Zhang > > > > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux > > > > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > > What is the output of "uname -a" on your machine? > > > > --Junchao Zhang > > > > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > Hi Guys, > > > > I just finished installing mpich. But when I tried to run it, it returned "cannot execute binary file". I double checked the file type by "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.16, not stripped". I am running 64-bit CentOS. > > > > Any ideas of this error? > > > > Thanks, > > YW > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

1 0

Re: [mpich-discuss] cannot execute binary file
by Yida Wang 21 May '14

21 May '14

1. -rwxr-xr-x 1 root root 1460092 May 21 20:41 mpiexec.hydra 2. not a dynamic executable Thanks, YW On Wed, May 21, 2014 at 10:11 PM, Lu, Huiwei <huiweilu(a)mcs.anl.gov> wrote: > This looks more like a Linux problem rather than a MPICH problem. > Could you give us the output of the following commands? > 1. ls -la mpiexec.hydra > 2. ldd -r mpiexec.hydra > > — > Huiwei > > On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > > The same error: > > -bash: ./mpiexec.hydra: cannot execute binary file > > > > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> > wrote: > > You can go to the directory with mpiexec.hydra, and type > ./mpiexec.hydra, to see what happens. > > > > --Junchao Zhang > > > > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC 2012 > x86_64 x86_64 x86_64 GNU/Linux > > > > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> > wrote: > > What is the output of "uname -a" on your machine? > > > > --Junchao Zhang > > > > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: > > Hi Guys, > > > > I just finished installing mpich. But when I tried to run it, it > returned "cannot execute binary file". I double checked the file type by > "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, > version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux > 2.6.16, not stripped". I am running 64-bit CentOS. > > > > Any ideas of this error? > > > > Thanks, > > YW > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

1 0

Re: [mpich-discuss] cannot execute binary file
by Lu, Huiwei 21 May '14

21 May '14

This looks more like a Linux problem rather than a MPICH problem. Could you give us the output of the following commands? 1. ls -la mpiexec.hydra 2. ldd -r mpiexec.hydra — Huiwei On May 21, 2014, at 8:53 PM, Yida Wang <yidawa(a)gmail.com> wrote: > The same error: > -bash: ./mpiexec.hydra: cannot execute binary file > > > On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > You can go to the directory with mpiexec.hydra, and type ./mpiexec.hydra, to see what happens. > > --Junchao Zhang > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> wrote: > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > What is the output of "uname -a" on your machine? > > --Junchao Zhang > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: > Hi Guys, > > I just finished installing mpich. But when I tried to run it, it returned "cannot execute binary file". I double checked the file type by "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.16, not stripped". I am running 64-bit CentOS. > > Any ideas of this error? > > Thanks, > YW > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

1 0

Re: [mpich-discuss] cannot execute binary file
by Yida Wang 21 May '14

21 May '14

The same error: -bash: ./mpiexec.hydra: cannot execute binary file On Wed, May 21, 2014 at 9:52 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > You can go to the directory with mpiexec.hydra, and type ./mpiexec.hydra, > to see what happens. > > --Junchao Zhang > > > On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> wrote: > >> Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC 2012 >> x86_64 x86_64 x86_64 GNU/Linux >> >> >> On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov>wrote: >> >>> What is the output of "uname -a" on your machine? >>> >>> --Junchao Zhang >>> >>> >>> On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: >>> >>>> Hi Guys, >>>> >>>> I just finished installing mpich. But when I tried to run it, it >>>> returned "cannot execute binary file". I double checked the file type by >>>> "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, >>>> version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux >>>> 2.6.16, not stripped". I am running 64-bit CentOS. >>>> >>>> Any ideas of this error? >>>> >>>> Thanks, >>>> YW >>>> >>>> _______________________________________________ >>>> discuss mailing list discuss(a)mpich.org >>>> To manage subscription options or unsubscribe: >>>> https://lists.mpich.org/mailman/listinfo/discuss >>>> >>> >>> >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >>> >> >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

1 0

Re: [mpich-discuss] cannot execute binary file
by Junchao Zhang 21 May '14

21 May '14

You can go to the directory with mpiexec.hydra, and type ./mpiexec.hydra, to see what happens. --Junchao Zhang On Wed, May 21, 2014 at 8:48 PM, Yida Wang <yidawa(a)gmail.com> wrote: > Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC 2012 > x86_64 x86_64 x86_64 GNU/Linux > > > On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov>wrote: > >> What is the output of "uname -a" on your machine? >> >> --Junchao Zhang >> >> >> On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: >> >>> Hi Guys, >>> >>> I just finished installing mpich. But when I tried to run it, it >>> returned "cannot execute binary file". I double checked the file type by >>> "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, >>> version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux >>> 2.6.16, not stripped". I am running 64-bit CentOS. >>> >>> Any ideas of this error? >>> >>> Thanks, >>> YW >>> >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >>> >> >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

1 0

Re: [mpich-discuss] cannot execute binary file
by Yida Wang 21 May '14

21 May '14

Linux xxx 2.6.32-279.14.1.el6.x86_64 #1 SMP Tue Nov 6 23:43:09 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux On Wed, May 21, 2014 at 9:46 PM, Junchao Zhang <jczhang(a)mcs.anl.gov> wrote: > What is the output of "uname -a" on your machine? > > --Junchao Zhang > > > On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: > >> Hi Guys, >> >> I just finished installing mpich. But when I tried to run it, it returned >> "cannot execute binary file". I double checked the file type by "file >> mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, >> version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux >> 2.6.16, not stripped". I am running 64-bit CentOS. >> >> Any ideas of this error? >> >> Thanks, >> YW >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

1 0

Re: [mpich-discuss] cannot execute binary file
by Junchao Zhang 21 May '14

21 May '14

What is the output of "uname -a" on your machine? --Junchao Zhang On Wed, May 21, 2014 at 8:05 PM, Yida Wang <yidawa(a)gmail.com> wrote: > Hi Guys, > > I just finished installing mpich. But when I tried to run it, it returned > "cannot execute binary file". I double checked the file type by "file > mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, > version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux > 2.6.16, not stripped". I am running 64-bit CentOS. > > Any ideas of this error? > > Thanks, > YW > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

1 0

Re: [mpich-discuss] Very long configuration time
by Rob Latham 21 May '14

21 May '14

On 05/21/2014 03:35 PM, Yida Wang wrote: > I have to use icc since I want to run code on Intel Xeon Phi. Also, I > tried to install MPICH2 since it claims to support Intel-MIC > architecture and is open source. long ago, autoconf used to support a local cache. sadly, that appears not to work, despite the continued presence of a --cache-file command line parameter. It was perfect for just these kinds of situations: for but one example, mpich looks for stdint.h twice. ==rob > > BTW, still configuring. It's faster to do it locally (both the source > code and the Intel compiler), but encountered a Fortran type length > detection error (don't remember the exact error information now, it > recommended me to "Consider setting CROSS_F77_SIZEOF_INTEGER to the > length in bytes of a Fortran INTEGER") last run. > > Thanks, > YW > > > On Wed, May 21, 2014 at 4:28 PM, Jed Brown <jed(a)jedbrown.org > <mailto:[email protected]>> wrote: > > Kenneth Raffenetti <raffenet(a)mcs.anl.gov > <mailto:[email protected]>> writes: > > > The Intel compilers could also be a source of slowdown. Are they > > installed on a network filesystem? They may also call out to a > network > > license server each time they are invoked for a compile test. > Does just > > compiling a small program take a long time with icc, ifort, etc.? > > The system headers and libraries are also often on a network file > system. Although moving the source tree to a local disk usually > provides some improvement, I rarely find it getting anywhere close to > the performance of a cheap laptop because most of the file accesses > performed by the compiler are hitting the network anyway. This is the > price we all pay for legacy file system semantics and dumb compiler > architecture. I think most companies in a place to change these things > do full local installs on their development boxes so that compilation is > fast. And the HPC vendors wear blindfolds and put their heads in the > sand. > > As for Intel license servers, this is the price you pay for anti-piracy > measures. People that are really ticked off by this crack their > compilers---the pirates enjoy a better user experience. Is it ethical > to use a cracked version if you've already paid for the licensed > version? > > Besides those issues, the Intel compiler usually takes a lot longer to > compile. It's worth building with gcc and clang to compare. You might > be pleasantly surprised to find that in addition to compiling faster, > your code also runs faster (this is the case for several applications I > work with). > > _______________________________________________ > discuss mailing list discuss(a)mpich.org <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > -- Rob Latham Mathematics and Computer Science Division Argonne National Lab, IL USA

1 0

cannot execute binary file
by Yida Wang 21 May '14

21 May '14

Hi Guys, I just finished installing mpich. But when I tried to run it, it returned "cannot execute binary file". I double checked the file type by "file mpiexec.hydra", which got "mpiexec.hydra: ELF 64-bit LSB executable, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.16, not stripped". I am running 64-bit CentOS. Any ideas of this error? Thanks, YW

1 0