January 2016 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] MPICH 3.2 on BlueGene/Q
by Balaji, Pavan 08 Jan '16

08 Jan '16

There are known build errors with mpich-3.2 on BG/Q. It is in maintenance mode, so newer releases will not be supported on BG/Q. -- Pavan > On Jan 8, 2016, at 4:35 AM, Dominic Chien <chiensh.acrc(a)gmail.com> wrote: > > Hi, > > I have been trying to install MPICH 3 on a BlueGene/Q system to evaluate the MPI-3 functionalities that are missed in the IBM supported MPI, and I also want to use it to build ARMCI-MPI3, GA and NWChem on this system. > > Based on the instruction prepared by Argonne National Lab (https://wiki.mpich.org/mpich/index.php/BGQ) I managed to build the MPICH 3.1rc4 on this system. Although I am still evaluating the stability and correctness of this version on BGQ, it seem promising so far. > > However, I got problem to build MPICH 3.2 with the same instruction, can anyone shade me some light to let me get it compile? > > Thanks! > > Regards, > Dominic > > Here is the environment variables > ==================================================================================== > export CC=/opt/ibmcmp/vac/bg/12.1/bin/bgxlc_r > export CXX=/opt/ibmcmp/vacpp/bg/12.1/bin/bgxlC_r > export F77=/opt/ibmcmp/xlf/bg/14.1/bin/bgxlf_r > export FC=/opt/ibmcmp/xlf/bg/14.1/bin/bgxlf90_r > export AR=/bgsys/drivers/V1R2M0/ppc64/gnu-linux/powerpc64-bgq-linux/bin/ar > export LD=/bgsys/drivers/V1R2M0/ppc64/gnu-linux/powerpc64-bgq-linux/bin/ld > export RANLIB=/bgsys/drivers/V1R2M0/ppc64/gnu-linux/powerpc64-bgq-linux/bin/ranlib > export MPICHLIB_CXXFLAGS="-qhot -qinline=800 -qflag=i:i -qsaveopt -qsuppress=1506-236" > export MPICHLIB_CFLAGS=${MPICHLIB_CXXFLAGS} > export MPICHLIB_FFLAGS=${MPICHLIB_CXXFLAGS} > export MPICHLIB_F90FLAGS=${MPICHLIB_CXXFLAGS} > ==================================================================================== > > Here is the configure > ==================================================================================== > ../configure --host=powerpc64-bgq-linux --with-device=pamid --with-file-system=gpfs:BGQ --with-bgq-install-dir=/bgsys/drivers/V1R2M0/ppc64 --with-pami=/bgsys/drivers/V1R2M0/ppc64/comm/sys --with-pami-include=/bgsys/drivers/V1R2M0/ppc64/comm/sys/include --with-pami-lib=/bgsys/drivers/V1R2M0/ppc64/comm/sys/lib --disable-wrapper-rpath --enable-fast=nochkmsg,notiming,O3 --with-assert-level=0 --disable-error-messages --disable-debuginfo --enable-thread-cs=per-object --with-atomic-primitives --enable-handle-allocation=tls --enable-refcount=lock-free --disable-predefined-refcount --with-cross-file=src/mpid/pamid/cross/bgq8 --prefix=/scratch/home/chiensh/apps/mpich/3.2.rc2 > ==================================================================================== > > Here is the make log > ==================================================================================== > ... > CC src/mpi/attr/lib_libmpi_la-attr_delete.lo > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidi_thread.h", line 64.9: 1506-358 (I) "MPIU_THREAD_CS_ENTER" is defined on line 80 of ../src/util/thread/mpiu_thread_multiple.h. > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidi_thread.h", line 65.9: 1506-358 (I) "MPIU_THREAD_CS_EXIT" is defined on line 81 of ../src/util/thread/mpiu_thread_multiple.h. > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidi_thread.h", line 66.9: 1506-358 (I) "MPIU_THREAD_CS_YIELD" is defined on line 82 of ../src/util/thread/mpiu_thread_multiple.h. > "../src/include/mpiimpl.h", line 1184.5: 1506-046 (S) Syntax error. > "../src/include/mpiimpl.h", line 1481.5: 1506-046 (S) Syntax error. > "../src/include/mpiimpl.h", line 1636.5: 1506-046 (S) Syntax error. > "../src/include/mpiimpl.h", line 2785.5: 1506-343 (S) Redeclaration of MPID_Send differs from previous declaration on line 2760 of "../src/include/mpiimpl.h". > "../src/include/mpiimpl.h", line 2785.5: 1506-377 (I) The type "int" of parameter 2 differs from the previous type "long". > "../src/include/mpiimpl.h", line 2884.5: 1506-343 (S) Redeclaration of MPID_Isend differs from previous declaration on line 2865 of "../src/include/mpiimpl.h". > "../src/include/mpiimpl.h", line 2884.5: 1506-377 (I) The type "int" of parameter 2 differs from the previous type "long". > "../src/include/mpitimpl.h", line 245.5: 1506-046 (S) Syntax error. > "../src/include/mpitimpl.h", line 900.40: 1506-022 (S) "total" is not a member of "struct {...}". > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 156.21: 1506-022 (S) "cc" is not a member of "struct MPID_Request". > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 157.8: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request". > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 157.23: 1506-022 (S) "cc" is not a member of "struct MPID_Request". > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 283.62: 1506-099 (S) Unexpected argument. > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 326.23: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request". > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 341.23: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request". > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 56.44: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 83.43: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm". > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 84.37: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm". > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 84.57: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 91.42: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". > "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 92.41: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". > "../src/mpi/attr/attr_delete.c", line 65.26: 1506-045 (S) Undeclared identifier GLOBAL. > make[2]: *** [src/mpi/attr/lib_libmpi_la-attr_delete.lo] Error 1 > make[2]: Leaving directory `/scratch/home/chiensh/mpich/mpich-3.2rc2/build' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory `/scratch/home/chiensh/mpich/mpich-3.2rc2/build' > make: *** [all] Error 2 > ==================================================================================== > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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MPICH 3.2 on BlueGene/Q
by Dominic Chien 08 Jan '16

08 Jan '16

Hi, I have been trying to install MPICH 3 on a BlueGene/Q system to evaluate the MPI-3 functionalities that are missed in the IBM supported MPI, and I also want to use it to build ARMCI-MPI3, GA and NWChem on this system. Based on the instruction prepared by Argonne National Lab (https://wiki.mpich.org/mpich/index.php/BGQ) I managed to build the MPICH 3.1rc4 on this system. Although I am still evaluating the stability and correctness of this version on BGQ, it seem promising so far. However, I got problem to build MPICH 3.2 with the same instruction, can anyone shade me some light to let me get it compile? Thanks! Regards, Dominic Here is the environment variables ==================================================================================== export CC=/opt/ibmcmp/vac/bg/12.1/bin/bgxlc_r export CXX=/opt/ibmcmp/vacpp/bg/12.1/bin/bgxlC_r export F77=/opt/ibmcmp/xlf/bg/14.1/bin/bgxlf_r export FC=/opt/ibmcmp/xlf/bg/14.1/bin/bgxlf90_r export AR=/bgsys/drivers/V1R2M0/ppc64/gnu-linux/powerpc64-bgq-linux/bin/ar export LD=/bgsys/drivers/V1R2M0/ppc64/gnu-linux/powerpc64-bgq-linux/bin/ld export RANLIB=/bgsys/drivers/V1R2M0/ppc64/gnu-linux/powerpc64-bgq-linux/bin/ranlib export MPICHLIB_CXXFLAGS="-qhot -qinline=800 -qflag=i:i -qsaveopt -qsuppress=1506-236" export MPICHLIB_CFLAGS=${MPICHLIB_CXXFLAGS} export MPICHLIB_FFLAGS=${MPICHLIB_CXXFLAGS} export MPICHLIB_F90FLAGS=${MPICHLIB_CXXFLAGS} ==================================================================================== Here is the configure ==================================================================================== ../configure --host=powerpc64-bgq-linux --with-device=pamid --with-file-system=gpfs:BGQ --with-bgq-install-dir=/bgsys/drivers/V1R2M0/ppc64 --with-pami=/bgsys/drivers/V1R2M0/ppc64/comm/sys --with-pami-include=/bgsys/drivers/V1R2M0/ppc64/comm/sys/include --with-pami-lib=/bgsys/drivers/V1R2M0/ppc64/comm/sys/lib --disable-wrapper-rpath --enable-fast=nochkmsg,notiming,O3 --with-assert-level=0 --disable-error-messages --disable-debuginfo --enable-thread-cs=per-object --with-atomic-primitives --enable-handle-allocation=tls --enable-refcount=lock-free --disable-predefined-refcount --with-cross-file=src/mpid/pamid/cross/bgq8 --prefix=/scratch/home/chiensh/apps/mpich/3.2.rc2 ==================================================================================== Here is the make log ==================================================================================== ... CC src/mpi/attr/lib_libmpi_la-attr_delete.lo "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidi_thread.h", line 64.9: 1506-358 (I) "MPIU_THREAD_CS_ENTER" is defined on line 80 of ../src/util/thread/mpiu_thread_multiple.h. "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidi_thread.h", line 65.9: 1506-358 (I) "MPIU_THREAD_CS_EXIT" is defined on line 81 of ../src/util/thread/mpiu_thread_multiple.h. "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidi_thread.h", line 66.9: 1506-358 (I) "MPIU_THREAD_CS_YIELD" is defined on line 82 of ../src/util/thread/mpiu_thread_multiple.h. "../src/include/mpiimpl.h", line 1184.5: 1506-046 (S) Syntax error. "../src/include/mpiimpl.h", line 1481.5: 1506-046 (S) Syntax error. "../src/include/mpiimpl.h", line 1636.5: 1506-046 (S) Syntax error. "../src/include/mpiimpl.h", line 2785.5: 1506-343 (S) Redeclaration of MPID_Send differs from previous declaration on line 2760 of "../src/include/mpiimpl.h". "../src/include/mpiimpl.h", line 2785.5: 1506-377 (I) The type "int" of parameter 2 differs from the previous type "long". "../src/include/mpiimpl.h", line 2884.5: 1506-343 (S) Redeclaration of MPID_Isend differs from previous declaration on line 2865 of "../src/include/mpiimpl.h". "../src/include/mpiimpl.h", line 2884.5: 1506-377 (I) The type "int" of parameter 2 differs from the previous type "long". "../src/include/mpitimpl.h", line 245.5: 1506-046 (S) Syntax error. "../src/include/mpitimpl.h", line 900.40: 1506-022 (S) "total" is not a member of "struct {...}". "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 156.21: 1506-022 (S) "cc" is not a member of "struct MPID_Request". "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 157.8: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request". "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 157.23: 1506-022 (S) "cc" is not a member of "struct MPID_Request". "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 283.62: 1506-099 (S) Unexpected argument. "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 326.23: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request". "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 341.23: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request". "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 56.44: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 83.43: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm". "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 84.37: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm". "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 84.57: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 91.42: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". "/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 92.41: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm". "../src/mpi/attr/attr_delete.c", line 65.26: 1506-045 (S) Undeclared identifier GLOBAL. make[2]: *** [src/mpi/attr/lib_libmpi_la-attr_delete.lo] Error 1 make[2]: Leaving directory `/scratch/home/chiensh/mpich/mpich-3.2rc2/build' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/scratch/home/chiensh/mpich/mpich-3.2rc2/build' make: *** [all] Error 2 ==================================================================================== _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] mpich-3.2 34
by Kenneth Raffenetti 06 Jan '16

06 Jan '16

You may need to add an explicit -lc flag to your LDFLAGS. Or if that doesn't work, you could try to LD_PRELOAD it. On 01/05/2016 01:40 PM, Professor W P Jones wrote: > Hi Jeff > > Yes /usr/lib64/libc.so does exist on my machine! But how do I configure > mpich to use this libc? > > Thanks > Bill > > Professor W P Jones > Department of Mechanical Engineering > Imperial College London > Exhibition Road > London SW7 2AZ > Tel: +44 (0)20 7594 7037/7033 > Mobile +44 (0)776 495 9702 > Fax: +44 (0)20 7594 5702 > E-mail:[email protected] > web site:http://www.imperial.ac.uk/me > > On 05/01/16 21:07, Jeff Hammond wrote: >> According to >> http://www.pgroup.com/userforum/viewtopic.php?t=539&view=previous&sid=50478… >> and >> http://www.linuxquestions.org/questions/linux-software-2/gcc-linker-error-h…'-in-usr-lib-libc_nonshared-a-stat-os-755962/ >> <http://www.linuxquestions.org/questions/linux-software-2/gcc-linker-error-h…>, >> it looks like a glibc issue. >> >> It might help to verify that the libc you are getting in this case is >> the right one and it works. You are getting one that appears designed >> for static linkage. Is there no /usr/lib64/libc.so on your machine? >> >> Jeff >> >> On Tue, Jan 5, 2016 at 11:04 AM, Professor W P Jones >> <<mailto:[email protected]>w.jones(a)imperial.ac.uk> wrote: >> >> Hi Ken >> >> I can send you the Makefile and output but the code has run >> successfully using various other flavours of mpi and compilers - >> mpich2, openmpi, intel mpi, gfortran and ifort etc. The example >> program pi3f90.f90 produces a similar error: >> >> wpj@kelvin:f90 20 mpif90 pi3f90.f90 >> Encountered 0 errors, 0 warnings in file pi3f90.f90. >> /usr/bin/ld: a.out: hidden symbol `lstat64' in >> /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO >> /usr/bin/ld: final link failed: Nonrepresentable section on output >> >> Regards >> Bill >> >> Professor W P Jones >> Department of Mechanical Engineering >> Imperial College London >> Exhibition Road >> London SW7 2AZ >> Tel: +44 (0)20 7594 7037/7033 >> Mobile +44 (0)776 495 9702 >> Fax: +44 (0)20 7594 5702 >> E-mail: w.jones(a)imperial.ac.uk <mailto:[email protected]> >> web site: http://www.imperial.ac.uk/me >> >> On 05/01/16 18:08, Kenneth Raffenetti wrote: >> >> Hi, >> >> Do you have a make log from the application you are trying to >> build that you can share? >> >> Separately, did the example cpi application build successfully >> at the end of the MPICH build? >> >> Ken >> >> On 01/05/2016 02:44 AM, Professor W P Jones wrote: >> >> Hi >> >> I have successfully compiled and installed the version >> suggested. >> However when I attempt to to use make to compile and link >> it fails on >> the link step with the message: >> >> /usr/bin/ld: boffin: hidden symbol `lstat64' in >> /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO >> /usr/bin/ld: final link failed: Nonrepresentable section >> on output >> make: [boffin] Error 1 (ignored) >> mv: cannot stat `./x86_64/boffin': No such file or directory >> make: *** [boffin] Error 1 >> >> The log files generated in the compiled and install are >> attached and >> the output from mpiexec -info is: >> >> HYDRA build details: >> Version: 3.2 >> Release Date: Mon Jan 4 >> 00:00:40 CST 2016 >> CC: icc >> CXX: icpc >> F77: lf95 >> F90: lf95 >> Configure options: '--disable-option-checking' >> '--prefix=/opt/mpich' '--enable-fortran=all' 'FC=lf95' >> 'F77=lf95' >> '--cache-file=/dev/null' '--srcdir=.' 'CC=icc' 'CFLAGS= >> -O2' 'LDFLAGS=' >> 'LIBS=-lpthread ' 'CPPFLAGS= >> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include >> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include >> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src >> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src >> -D_REENTRANT >> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpi/romio/include' >> >> 'MPLLIBNAME=mpl' >> Process Manager: pmi >> Launchers available: ssh rsh fork >> slurm ll lsf >> sge manual persist >> Topology libraries available: hwloc >> Resource management kernels available: user slurm >> ll lsf sge pbs >> cobalt >> Checkpointing libraries available: >> Demux engines available: poll select >> >> Regards >> Bill >> >> Professor W P Jones >> Department of Mechanical Engineering >> Imperial College London >> Exhibition Road >> London SW7 2AZ >> Tel: +44 (0)20 7594 7037/7033 >> Mobile +44 (0)776 495 9702 >> Fax: +44 (0)20 7594 5702 >> E-mail: w.jones(a)imperial.ac.uk <mailto:[email protected]> >> web site: http://www.imperial.ac.uk/me >> >> On 04/01/16 15:55, Kenneth Raffenetti wrote: >> >> Can you try the latest nightly tarball on the MPICH >> website? I >> committed a patch last night that I believe addresses >> the issue. I >> don't have a system with the lf95 compiler to test, so >> I just went >> from the documentation. >> >> Ken >> >> On 12/27/2015 07:49 PM, Professor W P Jones wrote: >> >> Hi Pavan >> >> Here are all the existing log files. >> >> Regards >> Bill >> >> Professor W P Jones >> Department of Mechanical Engineering >> Imperial College London >> Exhibition Road >> London SW7 2AZ >> Tel: +44 (0)20 7594 7037/7033 >> Mobile +44 (0)776 495 9702 >> Fax: +44 (0)20 7594 5702 >> E-mail: w.jones(a)imperial.ac.uk >> <mailto:[email protected]> >> web site: http://www.imperial.ac.uk/me >> >> On 28/12/15 00:40, Balaji, Pavan wrote: >> >> Could you send us the log files listed in the >> README? >> >> http://git.mpich.org/mpich.git/blob/HEAD:/README.vin#l235 >> >> -- Pavan >> >> On Dec 27, 2015, at 5:34 AM, Professor W P >> Jones >> <w.jones(a)imperial.ac.uk >> <mailto:[email protected]>> wrote: >> >> Hi >> >> I am trying to build MPICH-3.2 34 using >> Lahey/Fujitsu Linux64 >> Fortran Express Release L8.10b and I >> obtain the following error: >> >> checking for Fortran 90 module output >> directory flag... >> configure: error: FCMODOUTFLAG could not >> be determined but is >> critical for the current Fortran build system >> >> Please can you advise how this can be fixed? >> >> Many thanks >> Bill Jones >> >> -- >> Professor W P Jones >> Department of Mechanical Engineering >> Imperial College London >> Exhibition Road >> London SW7 2AZ >> Tel: +44 (0)20 7594 7037/7033 >> Mobile +44 (0)776 495 9702 >> Fax: +44 (0)20 7594 5702 >> E-mail: w.jones(a)imperial.ac.uk >> <mailto:[email protected]> >> web site: http://www.imperial.ac.uk/me >> >> _______________________________________________ >> discuss mailing list >> <mailto:[email protected]>discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> >> _______________________________________________ >> discuss mailing list >> <mailto:[email protected]>discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> >> >> >> _______________________________________________ >> discuss mailing list >> <mailto:[email protected]>discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> <mailto:[email protected]> >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> >> >> >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> <mailto:[email protected]> >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org <mailto:[email protected]> >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org <mailto:[email protected]> >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> >> >> >> >> -- >> Jeff Hammond >> jeff.science(a)gmail.com <mailto:[email protected]> >> http://jeffhammond.github.io/ >> >> >> _______________________________________________ >> discuss mailing listdiscuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] How to run mpi in docker (Jeff Hammond)
by Yiyong 05 Jan '16

05 Jan '16

Yes, Docker is like a VM and it has private IP address. It can use nat to communicate with other host. I need to map some ports of Docker to that of host machine, then dockers in different host machines can use the ports to communicate. Yiyong _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] How to run mpi in docker
by Jeff Hammond 05 Jan '16

05 Jan '16

Do dockers have IP addresses? Jeff On Tuesday, January 5, 2016, Yiyong <lyysdy(a)foxmail.com> wrote: > Hi, all > > I want to run mpi in dockers. > What ports does mpi use to communicate between different dockers? > > ------------------------------ > Yiyong > > -- Jeff Hammond jeff.science(a)gmail.com http://jeffhammond.github.io/ _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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How to run mpi in docker
by Yiyong 05 Jan '16

05 Jan '16

Hi, all I want to run mpi in dockers. What ports does mpi use to communicate between different dockers? Yiyong _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] mpich-3.2 34
by Professor W P Jones 05 Jan '16

05 Jan '16

Hi Jeff Yes /usr/lib64/libc.so does exist on my machine! But how do I configure mpich to use this libc? Thanks Bill Professor W P Jones Department of Mechanical Engineering Imperial College London Exhibition Road London SW7 2AZ Tel: +44 (0)20 7594 7037/7033 Mobile +44 (0)776 495 9702 Fax: +44 (0)20 7594 5702 E-mail: w.jones(a)imperial.ac.uk web site: http://www.imperial.ac.uk/me On 05/01/16 21:07, Jeff Hammond wrote: > According to > http://www.pgroup.com/userforum/viewtopic.php?t=539&view=previous&sid=50478… > and > http://www.linuxquestions.org/questions/linux-software-2/gcc-linker-error-h…'-in-usr-lib-libc_nonshared-a-stat-os-755962/ > <http://www.linuxquestions.org/questions/linux-software-2/gcc-linker-error-h…>, > it looks like a glibc issue. > > It might help to verify that the libc you are getting in this case is > the right one and it works. You are getting one that appears designed > for static linkage. Is there no /usr/lib64/libc.so on your machine? > > Jeff > > On Tue, Jan 5, 2016 at 11:04 AM, Professor W P Jones > <w.jones(a)imperial.ac.uk <mailto:[email protected]>> wrote: > > Hi Ken > > I can send you the Makefile and output but the code has run > successfully using various other flavours of mpi and compilers - > mpich2, openmpi, intel mpi, gfortran and ifort etc. The example > program pi3f90.f90 produces a similar error: > > wpj@kelvin:f90 20 mpif90 pi3f90.f90 > Encountered 0 errors, 0 warnings in file pi3f90.f90. > /usr/bin/ld: a.out: hidden symbol `lstat64' in > /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO > /usr/bin/ld: final link failed: Nonrepresentable section on output > > Regards > Bill > > Professor W P Jones > Department of Mechanical Engineering > Imperial College London > Exhibition Road > London SW7 2AZ > Tel: +44 (0)20 7594 7037/7033 > Mobile +44 (0)776 495 9702 > Fax: +44 (0)20 7594 5702 > E-mail: w.jones(a)imperial.ac.uk <mailto:[email protected]> > web site: http://www.imperial.ac.uk/me > > On 05/01/16 18:08, Kenneth Raffenetti wrote: > > Hi, > > Do you have a make log from the application you are trying to > build that you can share? > > Separately, did the example cpi application build successfully > at the end of the MPICH build? > > Ken > > On 01/05/2016 02:44 AM, Professor W P Jones wrote: > > Hi > > I have successfully compiled and installed the version > suggested. > However when I attempt to to use make to compile and link > it fails on > the link step with the message: > > /usr/bin/ld: boffin: hidden symbol `lstat64' in > /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO > /usr/bin/ld: final link failed: Nonrepresentable section > on output > make: [boffin] Error 1 (ignored) > mv: cannot stat `./x86_64/boffin': No such file or directory > make: *** [boffin] Error 1 > > The log files generated in the compiled and install are > attached and > the output from mpiexec -info is: > > HYDRA build details: > Version: 3.2 > Release Date: Mon Jan 4 > 00:00:40 CST 2016 > CC: icc > CXX: icpc > F77: lf95 > F90: lf95 > Configure options: '--disable-option-checking' > '--prefix=/opt/mpich' '--enable-fortran=all' 'FC=lf95' > 'F77=lf95' > '--cache-file=/dev/null' '--srcdir=.' 'CC=icc' 'CFLAGS= > -O2' 'LDFLAGS=' > 'LIBS=-lpthread ' 'CPPFLAGS= > -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include > -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include > -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src > -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src > -D_REENTRANT > -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpi/romio/include' > > 'MPLLIBNAME=mpl' > Process Manager: pmi > Launchers available: ssh rsh fork > slurm ll lsf > sge manual persist > Topology libraries available: hwloc > Resource management kernels available: user slurm > ll lsf sge pbs > cobalt > Checkpointing libraries available: > Demux engines available: poll select > > Regards > Bill > > Professor W P Jones > Department of Mechanical Engineering > Imperial College London > Exhibition Road > London SW7 2AZ > Tel: +44 (0)20 7594 7037/7033 > Mobile +44 (0)776 495 9702 > Fax: +44 (0)20 7594 5702 > E-mail: w.jones(a)imperial.ac.uk <mailto:[email protected]> > web site: http://www.imperial.ac.uk/me > > On 04/01/16 15:55, Kenneth Raffenetti wrote: > > Can you try the latest nightly tarball on the MPICH > website? I > committed a patch last night that I believe addresses > the issue. I > don't have a system with the lf95 compiler to test, so > I just went > from the documentation. > > Ken > > On 12/27/2015 07:49 PM, Professor W P Jones wrote: > > Hi Pavan > > Here are all the existing log files. > > Regards > Bill > > Professor W P Jones > Department of Mechanical Engineering > Imperial College London > Exhibition Road > London SW7 2AZ > Tel: +44 (0)20 7594 7037/7033 > Mobile +44 (0)776 495 9702 > Fax: +44 (0)20 7594 5702 > E-mail: w.jones(a)imperial.ac.uk > <mailto:[email protected]> > web site: http://www.imperial.ac.uk/me > > On 28/12/15 00:40, Balaji, Pavan wrote: > > Could you send us the log files listed in the > README? > > http://git.mpich.org/mpich.git/blob/HEAD:/README.vin#l235 > > -- Pavan > > On Dec 27, 2015, at 5:34 AM, Professor W P > Jones > <w.jones(a)imperial.ac.uk > <mailto:[email protected]>> wrote: > > Hi > > I am trying to build MPICH-3.2 34 using > Lahey/Fujitsu Linux64 > Fortran Express Release L8.10b and I > obtain the following error: > > checking for Fortran 90 module output > directory flag... > configure: error: FCMODOUTFLAG could not > be determined but is > critical for the current Fortran build system > > Please can you advise how this can be fixed? > > Many thanks > Bill Jones > > -- > Professor W P Jones > Department of Mechanical Engineering > Imperial College London > Exhibition Road > London SW7 2AZ > Tel: +44 (0)20 7594 7037/7033 > Mobile +44 (0)776 495 9702 > Fax: +44 (0)20 7594 5702 > E-mail: w.jones(a)imperial.ac.uk > <mailto:[email protected]> > web site: http://www.imperial.ac.uk/me > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > > > -- > Jeff Hammond > jeff.science(a)gmail.com <mailto:[email protected]> > http://jeffhammond.github.io/ > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] mpich-3.2 34
by Jeff Hammond 05 Jan '16

05 Jan '16

According to http://www.pgroup.com/userforum/viewtopic.php?t=539&view=previous&sid=50478… and http://www.linuxquestions.org/questions/linux-software-2/gcc-linker-error-h…'-in-usr-lib-libc_nonshared-a-stat-os-755962/, it looks like a glibc issue. It might help to verify that the libc you are getting in this case is the right one and it works. You are getting one that appears designed for static linkage. Is there no /usr/lib64/libc.so on your machine? Jeff On Tue, Jan 5, 2016 at 11:04 AM, Professor W P Jones <w.jones(a)imperial.ac.uk > wrote: > Hi Ken > > I can send you the Makefile and output but the code has run successfully > using various other flavours of mpi and compilers - mpich2, openmpi, intel > mpi, gfortran and ifort etc. The example program pi3f90.f90 produces a > similar error: > > wpj@kelvin:f90 20 mpif90 pi3f90.f90 > Encountered 0 errors, 0 warnings in file pi3f90.f90. > /usr/bin/ld: a.out: hidden symbol `lstat64' in > /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO > /usr/bin/ld: final link failed: Nonrepresentable section on output > > Regards > Bill > > Professor W P Jones > Department of Mechanical Engineering > Imperial College London > Exhibition Road > London SW7 2AZ > Tel: +44 (0)20 7594 7037/7033 > Mobile +44 (0)776 495 9702 > Fax: +44 (0)20 7594 5702 > E-mail: w.jones(a)imperial.ac.uk > web site: http://www.imperial.ac.uk/me > > On 05/01/16 18:08, Kenneth Raffenetti wrote: > >> Hi, >> >> Do you have a make log from the application you are trying to build that >> you can share? >> >> Separately, did the example cpi application build successfully at the end >> of the MPICH build? >> >> Ken >> >> On 01/05/2016 02:44 AM, Professor W P Jones wrote: >> >>> Hi >>> >>> I have successfully compiled and installed the version suggested. >>> However when I attempt to to use make to compile and link it fails on >>> the link step with the message: >>> >>> /usr/bin/ld: boffin: hidden symbol `lstat64' in >>> /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO >>> /usr/bin/ld: final link failed: Nonrepresentable section on output >>> make: [boffin] Error 1 (ignored) >>> mv: cannot stat `./x86_64/boffin': No such file or directory >>> make: *** [boffin] Error 1 >>> >>> The log files generated in the compiled and install are attached and >>> the output from mpiexec -info is: >>> >>> HYDRA build details: >>> Version: 3.2 >>> Release Date: Mon Jan 4 00:00:40 CST >>> 2016 >>> CC: icc >>> CXX: icpc >>> F77: lf95 >>> F90: lf95 >>> Configure options: '--disable-option-checking' >>> '--prefix=/opt/mpich' '--enable-fortran=all' 'FC=lf95' 'F77=lf95' >>> '--cache-file=/dev/null' '--srcdir=.' 'CC=icc' 'CFLAGS= -O2' 'LDFLAGS=' >>> 'LIBS=-lpthread ' 'CPPFLAGS= >>> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include >>> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include >>> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src >>> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src >>> -D_REENTRANT >>> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpi/romio/include' >>> >>> 'MPLLIBNAME=mpl' >>> Process Manager: pmi >>> Launchers available: ssh rsh fork slurm ll lsf >>> sge manual persist >>> Topology libraries available: hwloc >>> Resource management kernels available: user slurm ll lsf sge pbs >>> cobalt >>> Checkpointing libraries available: >>> Demux engines available: poll select >>> >>> Regards >>> Bill >>> >>> Professor W P Jones >>> Department of Mechanical Engineering >>> Imperial College London >>> Exhibition Road >>> London SW7 2AZ >>> Tel: +44 (0)20 7594 7037/7033 >>> Mobile +44 (0)776 495 9702 >>> Fax: +44 (0)20 7594 5702 >>> E-mail: w.jones(a)imperial.ac.uk >>> web site: http://www.imperial.ac.uk/me >>> >>> On 04/01/16 15:55, Kenneth Raffenetti wrote: >>> >>>> Can you try the latest nightly tarball on the MPICH website? I >>>> committed a patch last night that I believe addresses the issue. I >>>> don't have a system with the lf95 compiler to test, so I just went >>>> from the documentation. >>>> >>>> Ken >>>> >>>> On 12/27/2015 07:49 PM, Professor W P Jones wrote: >>>> >>>>> Hi Pavan >>>>> >>>>> Here are all the existing log files. >>>>> >>>>> Regards >>>>> Bill >>>>> >>>>> Professor W P Jones >>>>> Department of Mechanical Engineering >>>>> Imperial College London >>>>> Exhibition Road >>>>> London SW7 2AZ >>>>> Tel: +44 (0)20 7594 7037/7033 >>>>> Mobile +44 (0)776 495 9702 >>>>> Fax: +44 (0)20 7594 5702 >>>>> E-mail: w.jones(a)imperial.ac.uk >>>>> web site: http://www.imperial.ac.uk/me >>>>> >>>>> On 28/12/15 00:40, Balaji, Pavan wrote: >>>>> >>>>>> Could you send us the log files listed in the README? >>>>>> >>>>>> http://git.mpich.org/mpich.git/blob/HEAD:/README.vin#l235 >>>>>> >>>>>> -- Pavan >>>>>> >>>>>> On Dec 27, 2015, at 5:34 AM, Professor W P Jones >>>>>>> <w.jones(a)imperial.ac.uk> wrote: >>>>>>> >>>>>>> Hi >>>>>>> >>>>>>> I am trying to build MPICH-3.2 34 using Lahey/Fujitsu Linux64 >>>>>>> Fortran Express Release L8.10b and I obtain the following error: >>>>>>> >>>>>>> checking for Fortran 90 module output directory flag... >>>>>>> configure: error: FCMODOUTFLAG could not be determined but is >>>>>>> critical for the current Fortran build system >>>>>>> >>>>>>> Please can you advise how this can be fixed? >>>>>>> >>>>>>> Many thanks >>>>>>> Bill Jones >>>>>>> >>>>>>> -- >>>>>>> Professor W P Jones >>>>>>> Department of Mechanical Engineering >>>>>>> Imperial College London >>>>>>> Exhibition Road >>>>>>> London SW7 2AZ >>>>>>> Tel: +44 (0)20 7594 7037/7033 >>>>>>> Mobile +44 (0)776 495 9702 >>>>>>> Fax: +44 (0)20 7594 5702 >>>>>>> E-mail: w.jones(a)imperial.ac.uk >>>>>>> web site: http://www.imperial.ac.uk/me >>>>>>> >>>>>>> _______________________________________________ >>>>>>> discuss mailing list discuss(a)mpich.org >>>>>>> To manage subscription options or unsubscribe: >>>>>>> https://lists.mpich.org/mailman/listinfo/discuss >>>>>>> >>>>>> _______________________________________________ >>>>>> discuss mailing list discuss(a)mpich.org >>>>>> To manage subscription options or unsubscribe: >>>>>> https://lists.mpich.org/mailman/listinfo/discuss >>>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> discuss mailing list discuss(a)mpich.org >>>>> To manage subscription options or unsubscribe: >>>>> https://lists.mpich.org/mailman/listinfo/discuss >>>>> >>>>> _______________________________________________ >>>> discuss mailing list discuss(a)mpich.org >>>> To manage subscription options or unsubscribe: >>>> https://lists.mpich.org/mailman/listinfo/discuss >>>> >>> >>> >>> >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >>> >>> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > -- Jeff Hammond jeff.science(a)gmail.com http://jeffhammond.github.io/ _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] mpich-3.2 34
by Professor W P Jones 05 Jan '16

05 Jan '16

Hi Ken I can send you the Makefile and output but the code has run successfully using various other flavours of mpi and compilers - mpich2, openmpi, intel mpi, gfortran and ifort etc. The example program pi3f90.f90 produces a similar error: wpj@kelvin:f90 20 mpif90 pi3f90.f90 Encountered 0 errors, 0 warnings in file pi3f90.f90. /usr/bin/ld: a.out: hidden symbol `lstat64' in /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO /usr/bin/ld: final link failed: Nonrepresentable section on output Regards Bill Professor W P Jones Department of Mechanical Engineering Imperial College London Exhibition Road London SW7 2AZ Tel: +44 (0)20 7594 7037/7033 Mobile +44 (0)776 495 9702 Fax: +44 (0)20 7594 5702 E-mail: w.jones(a)imperial.ac.uk web site: http://www.imperial.ac.uk/me On 05/01/16 18:08, Kenneth Raffenetti wrote: > Hi, > > Do you have a make log from the application you are trying to build > that you can share? > > Separately, did the example cpi application build successfully at the > end of the MPICH build? > > Ken > > On 01/05/2016 02:44 AM, Professor W P Jones wrote: >> Hi >> >> I have successfully compiled and installed the version suggested. >> However when I attempt to to use make to compile and link it fails on >> the link step with the message: >> >> /usr/bin/ld: boffin: hidden symbol `lstat64' in >> /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO >> /usr/bin/ld: final link failed: Nonrepresentable section on output >> make: [boffin] Error 1 (ignored) >> mv: cannot stat `./x86_64/boffin': No such file or directory >> make: *** [boffin] Error 1 >> >> The log files generated in the compiled and install are attached and >> the output from mpiexec -info is: >> >> HYDRA build details: >> Version: 3.2 >> Release Date: Mon Jan 4 00:00:40 CST >> 2016 >> CC: icc >> CXX: icpc >> F77: lf95 >> F90: lf95 >> Configure options: '--disable-option-checking' >> '--prefix=/opt/mpich' '--enable-fortran=all' 'FC=lf95' 'F77=lf95' >> '--cache-file=/dev/null' '--srcdir=.' 'CC=icc' 'CFLAGS= -O2' 'LDFLAGS=' >> 'LIBS=-lpthread ' 'CPPFLAGS= >> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include >> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include >> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src >> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src >> -D_REENTRANT >> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpi/romio/include' >> >> 'MPLLIBNAME=mpl' >> Process Manager: pmi >> Launchers available: ssh rsh fork slurm ll lsf >> sge manual persist >> Topology libraries available: hwloc >> Resource management kernels available: user slurm ll lsf sge pbs >> cobalt >> Checkpointing libraries available: >> Demux engines available: poll select >> >> Regards >> Bill >> >> Professor W P Jones >> Department of Mechanical Engineering >> Imperial College London >> Exhibition Road >> London SW7 2AZ >> Tel: +44 (0)20 7594 7037/7033 >> Mobile +44 (0)776 495 9702 >> Fax: +44 (0)20 7594 5702 >> E-mail: w.jones(a)imperial.ac.uk >> web site: http://www.imperial.ac.uk/me >> >> On 04/01/16 15:55, Kenneth Raffenetti wrote: >>> Can you try the latest nightly tarball on the MPICH website? I >>> committed a patch last night that I believe addresses the issue. I >>> don't have a system with the lf95 compiler to test, so I just went >>> from the documentation. >>> >>> Ken >>> >>> On 12/27/2015 07:49 PM, Professor W P Jones wrote: >>>> Hi Pavan >>>> >>>> Here are all the existing log files. >>>> >>>> Regards >>>> Bill >>>> >>>> Professor W P Jones >>>> Department of Mechanical Engineering >>>> Imperial College London >>>> Exhibition Road >>>> London SW7 2AZ >>>> Tel: +44 (0)20 7594 7037/7033 >>>> Mobile +44 (0)776 495 9702 >>>> Fax: +44 (0)20 7594 5702 >>>> E-mail: w.jones(a)imperial.ac.uk >>>> web site: http://www.imperial.ac.uk/me >>>> >>>> On 28/12/15 00:40, Balaji, Pavan wrote: >>>>> Could you send us the log files listed in the README? >>>>> >>>>> http://git.mpich.org/mpich.git/blob/HEAD:/README.vin#l235 >>>>> >>>>> -- Pavan >>>>> >>>>>> On Dec 27, 2015, at 5:34 AM, Professor W P Jones >>>>>> <w.jones(a)imperial.ac.uk> wrote: >>>>>> >>>>>> Hi >>>>>> >>>>>> I am trying to build MPICH-3.2 34 using Lahey/Fujitsu Linux64 >>>>>> Fortran Express Release L8.10b and I obtain the following error: >>>>>> >>>>>> checking for Fortran 90 module output directory flag... >>>>>> configure: error: FCMODOUTFLAG could not be determined but is >>>>>> critical for the current Fortran build system >>>>>> >>>>>> Please can you advise how this can be fixed? >>>>>> >>>>>> Many thanks >>>>>> Bill Jones >>>>>> >>>>>> -- >>>>>> Professor W P Jones >>>>>> Department of Mechanical Engineering >>>>>> Imperial College London >>>>>> Exhibition Road >>>>>> London SW7 2AZ >>>>>> Tel: +44 (0)20 7594 7037/7033 >>>>>> Mobile +44 (0)776 495 9702 >>>>>> Fax: +44 (0)20 7594 5702 >>>>>> E-mail: w.jones(a)imperial.ac.uk >>>>>> web site: http://www.imperial.ac.uk/me >>>>>> >>>>>> _______________________________________________ >>>>>> discuss mailing list discuss(a)mpich.org >>>>>> To manage subscription options or unsubscribe: >>>>>> https://lists.mpich.org/mailman/listinfo/discuss >>>>> _______________________________________________ >>>>> discuss mailing list discuss(a)mpich.org >>>>> To manage subscription options or unsubscribe: >>>>> https://lists.mpich.org/mailman/listinfo/discuss >>>> >>>> >>>> _______________________________________________ >>>> discuss mailing list discuss(a)mpich.org >>>> To manage subscription options or unsubscribe: >>>> https://lists.mpich.org/mailman/listinfo/discuss >>>> >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >> >> >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] [OMPI users] cleaning up old ROMIO (MPI-IO) drivers
by Rob Latham 05 Jan '16

05 Jan '16

On 01/05/2016 11:43 AM, Gus Correa wrote: > Hi Rob > > Your email says you'll keep PVFS2. > However, on your blog PVFS2 is not mentioned (on the "Keep" list). > I suppose it will be kept, right? Right. An oversight on my part. PVFS2 will stay. ==rob > > Thank you, > Gus Correa > > On 01/05/2016 12:31 PM, Rob Latham wrote: >> I'm itching to discard some of the little-used file system drivers in >> ROMIO, an MPI-IO implementation used by, well, everyone. >> >> I've got more details in this ROMIO blog post: >> http://press3.mcs.anl.gov/romio/2016/01/05/cleaning-out-old-romio-file-syst… >> >> >> >> >> Right now the plan is to keep these drivers: >> >> - Lustre >> - GPFS >> - UFS >> - PVFS2 >> - PANFS >> - NFS >> - TESTFS >> - XFS >> >> Do you use any of the other ROMIO file system drivers? If you don't >> know if you do, or don't know what a ROMIO file system driver is, then >> it's unlikely you are using one. >> >> What if you use a driver and it's not on the list? First off, let me >> know and I will probably want to visit your site and take a picture of >> your system. Then, let me know how much longer you foresee using the >> driver and we'll create a "deprecated" list for N more years. >> >> Thanks >> ==rob >> >> > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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