April 2011 - Mg-rast - mailman3.cels.anl.gov

M5NR database
by Torey Looft 08 Apr '11

08 Apr '11

Hello, I am having a problem making organism classifications using the M5NR database. With the bar graph, all metagenomes come back with 0 for every category. I did this analysis a couple weeks ago and it worked, and isn't a problem when using the other databases. It there a problem with this database? Thanks! Torey

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Re: [mg-rast] mg-rast ftp upload site...
by Rob Knight 08 Apr '11

08 Apr '11

Thanks, Jared. Rob On Apr 8, 2011, at 12:43 PM, Jared Wilkening wrote: > Thanks Jesse. We'll get right on this and keep you guys up speed. > > Jared > > On Fri, Apr 8, 2011 at 1:38 PM, Jesse Stombaugh <jistombaugh(a)gmail.com> wrote: > Hey Jared, > > So I have uploaded 4 zipped files along with 4 mapping files associated to each zip file. The files include 16S and metagenomic sequences which are defined in each checksum mapping file, along with the project_name that should be associated with each set of samples. > > Files included: > Mammal.16S.Data.zip > Mammal.MG.Data.zip > CRBM.16S.Data.zip > CRBM.MG.Data.zip > Mammal.16S.checkSum.txt > Mammal.MG.checkSum.txt > CRBM.16S.checkSum.txt > CRBM.MG.checkSum.txt > > The 16S samples can be processed through your 16S pipeline and the metagenomic samples have already been screened and dereplicated, so run it through the same pipeline as Tanya's data. > > Let me know if you have further questions, > Jesse > > On Fri, Apr 8, 2011 at 12:31 PM, Jesse Stombaugh <jistombaugh(a)gmail.com> wrote: > I will be uploading Brian's data shortly, and then we will send his metadata through our DB in the afternoon. > > -Jesse > > > On Fri, Apr 8, 2011 at 12:29 PM, Jared Wilkening <jared.wilkening(a)gmail.com> wrote: > Yesterday we talked about two datasets. Obviously we have tanya's but what is the status of the other? > > Jared > > > On Fri, Apr 8, 2011 at 1:08 PM, Jesse Stombaugh <jistombaugh(a)gmail.com> wrote: > Thanks Jared! > > > On Fri, Apr 8, 2011 at 12:05 PM, Jared Wilkening <jared.wilkening(a)gmail.com> wrote: > Jesse, > > The jobs have all been create with you as the owner and are visible to you from the browse page. Currently all of them are at the point of sims calculation and should complete in a few hours. > > I ended up submitting Amz10baby twice by accident so we should just not include the duplicate in the project. Below are the job numbers. > > 20716 Amz10baby (dup) > 20717 Amz10baby > 20718 Amz1baby > 20719 Amz1teenF > 20720 Amz2adltF > 20721 Amz2infF > 20722 Amz4chldM1 > 20723 Amz4chldM2 > 20724 Amz5chldF1 > 20725 Amz5chldF2 > 20726 Amz5teenF > 20727 Amz7adltF > 20728 Amz7eldM > 20729 Amz9baby > 20730 AmzC14infF > 20731 AmzC15infF > 20732 AmzC1babyF2 > 20733 AmzC2babyF > 20734 AmzC3babyF > 20735 AmzC5adltF > 20736 AmzC5chldF > 20737 AmzC5chldM > 20738 F3T1pre4 > 20739 F3T2pre4 > 20740 F4T1pre4 > 20741 F4T2pre4 > 20742 h10A.1 > 20743 h10B.1 > 20744 h10M > 20745 h121A.1 > 20746 h121B.1 > 20747 h209A.2 > 20748 h209B.2 > 20749 h257A.1 > 20750 h257B.1 > 20751 h257M.2 > 20752 h259A.1 > 20753 h259B.1 > 20754 h301A.1 > 20755 h301B.1 > 20756 h301M.1 > 20757 h37A.1 > 20758 h37B.1 > 20759 h37M > 20760 h47A.1 > 20761 h47B.1 > 20762 h95A.1 > 20763 h95B.1 > 20764 h95M > 20765 ITS_d371_12mo > 20766 USBldChld10 > 20767 USBldChld2 > 20768 USBldChld4 > 20769 USBldChld5 > 20770 USBldChld8 > 20771 USchp18Child > 20772 USchp18Mom > 20773 USchp33ChildA > 20774 USchp33ChildB > 20775 USchp33Mom > 20776 USchp60Infant > 20777 USchp60Mom > 20778 USinfTw1.1 > 20779 USinfTw1.2 > 20780 USinfTw10.1 > 20781 USinfTw10.2 > 20782 USinfTw11.1 > 20783 USinfTw11.2 > 20784 USinfTw12.1 > 20785 USinfTw12.2 > 20786 USinfTw13.1 > 20787 USinfTw13.2 > 20788 USinfTw15.1 > 20789 USinfTw15.2 > 20790 USinfTw16.1 > 20791 USinfTw16.2 > 20792 USinfTw17.1 > 20793 USinfTw17.2 > 20794 USinfTw18.1 > 20795 USinfTw18.2 > 20796 USinfTw19.1 > 20797 USinfTw19.2 > 20798 USinfTw2.1 > 20799 USinfTw2.2 > 20800 USinfTw20.1 > 20801 USinfTw20.2 > 20802 USinfTw21.1 > 20803 USinfTw21.2 > 20804 USinfTw3.1 > 20805 USinfTw3.2 > 20806 USinfTw4.1 > 20807 USinfTw4.2 > 20808 USinfTw5.1 > 20809 USinfTw5.2 > 20810 USinfTw6.1 > 20811 USinfTw6.2 > 20812 USinfTw7.1 > 20813 USinfTw7.2 > 20814 USinfTw8.1 > 20815 USinfTw8.2 > 20816 USinfTw9.1 > 20817 USinfTw9.2 > 20818 USts1.M1 > 20819 USts1.T1 > 20820 USts1.T2 > 20821 USts2.M1 > 20822 USts2.T1 > 20823 USts2.T2 > 20824 USts3.M1 > 20825 USts3.T1 > 20826 USts3.T2 > > > On Fri, Apr 8, 2011 at 12:15 PM, Jesse Stombaugh <jistombaugh(a)gmail.com> wrote: > I suggest keeping either me or Tanya/Brian as the owner and share the data between us, since I want to monitor their data processing and be able to assist them with analyses, if necessary. > > -Jesse > > > On Fri, Apr 8, 2011 at 11:06 AM, Andreas Wilke <wilke(a)mcs.anl.gov> wrote: > Hi Doug , Brian , Tanya > > thanks for the logfile. I checked some entries and they are looking good but I will go through the logfile thoroughly. > > You need an account to view the private data , if you don't have one please go to > > metagenomics.anl.gov/metagenomics.cgi?page=Register > > and request a login. I need your login information to give you ownership of your data. > > Andreas > > > > On Apr 8, 2011, at 6:47 PM, Doug Wendel wrote: > >> Data has been sent... Andreas, here's the log. >> >> <tanya_output.txt.zip> > > > Andreas Wilke > Argonne National Laboratory > Mathematics and Computer Science Division > Bldg. 240 , 4F8 > 9700 South Cass Avenue > Argonne, IL 60439 > (630) 252-3190 (phone) > (630) 252-5986.(fax) > > > > > -- > Jesse Stombaugh, Ph.D. > Research Associate > University of Colorado, Boulder > > > > > -- > Jesse Stombaugh, Ph.D. > Research Associate > University of Colorado, Boulder > > > > > -- > Jesse Stombaugh, Ph.D. > Research Associate > University of Colorado, Boulder > > > > -- > Jesse Stombaugh, Ph.D. > Research Associate > University of Colorado, Boulder >

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Re: [mg-rast] mg-rast ftp upload site...
by Jared Wilkening 08 Apr '11

08 Apr '11

Thanks Jesse. We'll get right on this and keep you guys up speed. Jared On Fri, Apr 8, 2011 at 1:38 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: > Hey Jared, > > So I have uploaded 4 zipped files along with 4 mapping files associated to > each zip file. The files include 16S and metagenomic sequences which are > defined in each checksum mapping file, along with the project_name that > should be associated with each set of samples. > > Files included: > Mammal.16S.Data.zip > Mammal.MG.Data.zip > CRBM.16S.Data.zip > CRBM.MG.Data.zip > Mammal.16S.checkSum.txt > Mammal.MG.checkSum.txt > CRBM.16S.checkSum.txt > CRBM.MG.checkSum.txt > > The 16S samples can be processed through your 16S pipeline and the > metagenomic samples have already been screened and dereplicated, so run it > through the same pipeline as Tanya's data. > > Let me know if you have further questions, > Jesse > > On Fri, Apr 8, 2011 at 12:31 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: > >> I will be uploading Brian's data shortly, and then we will send his >> metadata through our DB in the afternoon. >> >> -Jesse >> >> >> On Fri, Apr 8, 2011 at 12:29 PM, Jared Wilkening < >> jared.wilkening(a)gmail.com> wrote: >> >>> Yesterday we talked about two datasets. Obviously we have tanya's but >>> what is the status of the other? >>> >>> Jared >>> >>> >>> On Fri, Apr 8, 2011 at 1:08 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: >>> >>>> Thanks Jared! >>>> >>>> >>>> On Fri, Apr 8, 2011 at 12:05 PM, Jared Wilkening < >>>> jared.wilkening(a)gmail.com> wrote: >>>> >>>>> Jesse, >>>>> >>>>> The jobs have all been create with you as the owner and are visible to >>>>> you from the browse page. Currently all of them are at the point of sims >>>>> calculation and should complete in a few hours. >>>>> >>>>> I ended up submitting Amz10baby twice by accident so we should just not >>>>> include the duplicate in the project. Below are the job numbers. >>>>> >>>>> 20716 Amz10baby (dup) >>>>> 20717 Amz10baby >>>>> 20718 Amz1baby >>>>> 20719 Amz1teenF >>>>> 20720 Amz2adltF >>>>> 20721 Amz2infF >>>>> 20722 Amz4chldM1 >>>>> 20723 Amz4chldM2 >>>>> 20724 Amz5chldF1 >>>>> 20725 Amz5chldF2 >>>>> 20726 Amz5teenF >>>>> 20727 Amz7adltF >>>>> 20728 Amz7eldM >>>>> 20729 Amz9baby >>>>> 20730 AmzC14infF >>>>> 20731 AmzC15infF >>>>> 20732 AmzC1babyF2 >>>>> 20733 AmzC2babyF >>>>> 20734 AmzC3babyF >>>>> 20735 AmzC5adltF >>>>> 20736 AmzC5chldF >>>>> 20737 AmzC5chldM >>>>> 20738 F3T1pre4 >>>>> 20739 F3T2pre4 >>>>> 20740 F4T1pre4 >>>>> 20741 F4T2pre4 >>>>> 20742 h10A.1 >>>>> 20743 h10B.1 >>>>> 20744 h10M >>>>> 20745 h121A.1 >>>>> 20746 h121B.1 >>>>> 20747 h209A.2 >>>>> 20748 h209B.2 >>>>> 20749 h257A.1 >>>>> 20750 h257B.1 >>>>> 20751 h257M.2 >>>>> 20752 h259A.1 >>>>> 20753 h259B.1 >>>>> 20754 h301A.1 >>>>> 20755 h301B.1 >>>>> 20756 h301M.1 >>>>> 20757 h37A.1 >>>>> 20758 h37B.1 >>>>> 20759 h37M >>>>> 20760 h47A.1 >>>>> 20761 h47B.1 >>>>> 20762 h95A.1 >>>>> 20763 h95B.1 >>>>> 20764 h95M >>>>> 20765 ITS_d371_12mo >>>>> 20766 USBldChld10 >>>>> 20767 USBldChld2 >>>>> 20768 USBldChld4 >>>>> 20769 USBldChld5 >>>>> 20770 USBldChld8 >>>>> 20771 USchp18Child >>>>> 20772 USchp18Mom >>>>> 20773 USchp33ChildA >>>>> 20774 USchp33ChildB >>>>> 20775 USchp33Mom >>>>> 20776 USchp60Infant >>>>> 20777 USchp60Mom >>>>> 20778 USinfTw1.1 >>>>> 20779 USinfTw1.2 >>>>> 20780 USinfTw10.1 >>>>> 20781 USinfTw10.2 >>>>> 20782 USinfTw11.1 >>>>> 20783 USinfTw11.2 >>>>> 20784 USinfTw12.1 >>>>> 20785 USinfTw12.2 >>>>> 20786 USinfTw13.1 >>>>> 20787 USinfTw13.2 >>>>> 20788 USinfTw15.1 >>>>> 20789 USinfTw15.2 >>>>> 20790 USinfTw16.1 >>>>> 20791 USinfTw16.2 >>>>> 20792 USinfTw17.1 >>>>> 20793 USinfTw17.2 >>>>> 20794 USinfTw18.1 >>>>> 20795 USinfTw18.2 >>>>> 20796 USinfTw19.1 >>>>> 20797 USinfTw19.2 >>>>> 20798 USinfTw2.1 >>>>> 20799 USinfTw2.2 >>>>> 20800 USinfTw20.1 >>>>> 20801 USinfTw20.2 >>>>> 20802 USinfTw21.1 >>>>> 20803 USinfTw21.2 >>>>> 20804 USinfTw3.1 >>>>> 20805 USinfTw3.2 >>>>> 20806 USinfTw4.1 >>>>> 20807 USinfTw4.2 >>>>> 20808 USinfTw5.1 >>>>> 20809 USinfTw5.2 >>>>> 20810 USinfTw6.1 >>>>> 20811 USinfTw6.2 >>>>> 20812 USinfTw7.1 >>>>> 20813 USinfTw7.2 >>>>> 20814 USinfTw8.1 >>>>> 20815 USinfTw8.2 >>>>> 20816 USinfTw9.1 >>>>> 20817 USinfTw9.2 >>>>> 20818 USts1.M1 >>>>> 20819 USts1.T1 >>>>> 20820 USts1.T2 >>>>> 20821 USts2.M1 >>>>> 20822 USts2.T1 >>>>> 20823 USts2.T2 >>>>> 20824 USts3.M1 >>>>> 20825 USts3.T1 >>>>> 20826 USts3.T2 >>>>> >>>>> >>>>> On Fri, Apr 8, 2011 at 12:15 PM, Jesse Stombaugh < >>>>> jistombaugh(a)gmail.com> wrote: >>>>> >>>>>> I suggest keeping either me or Tanya/Brian as the owner and share the >>>>>> data between us, since I want to monitor their data processing and be able >>>>>> to assist them with analyses, if necessary. >>>>>> >>>>>> -Jesse >>>>>> >>>>>> >>>>>> On Fri, Apr 8, 2011 at 11:06 AM, Andreas Wilke <wilke(a)mcs.anl.gov>wrote: >>>>>> >>>>>>> Hi Doug , Brian , Tanya >>>>>>> >>>>>>> thanks for the logfile. I checked some entries and they are looking >>>>>>> good but I will go through the logfile thoroughly. >>>>>>> >>>>>>> You need an account to view the private data , if you don't have one >>>>>>> please go to >>>>>>> >>>>>>> metagenomics.anl.gov/metagenomics.cgi?page=Register >>>>>>> >>>>>>> and request a login. I need your login information to give you >>>>>>> ownership of your data. >>>>>>> >>>>>>> Andreas >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Apr 8, 2011, at 6:47 PM, Doug Wendel wrote: >>>>>>> >>>>>>> Data has been sent... Andreas, here's the log. >>>>>>> >>>>>>> <tanya_output.txt.zip> >>>>>>> >>>>>>> >>>>>>> Andreas Wilke >>>>>>> Argonne National Laboratory >>>>>>> Mathematics and Computer Science Division >>>>>>> Bldg. 240 , 4F8 >>>>>>> 9700 South Cass Avenue >>>>>>> Argonne, IL 60439 >>>>>>> (630) 252-3190 (phone) >>>>>>> (630) 252-5986.(fax) >>>>>>> >>>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> Jesse Stombaugh, Ph.D. >>>>>> Research Associate >>>>>> University of Colorado, Boulder >>>>>> >>>>> >>>>> >>>> >>>> >>>> -- >>>> Jesse Stombaugh, Ph.D. >>>> Research Associate >>>> University of Colorado, Boulder >>>> >>> >>> >> >> >> -- >> Jesse Stombaugh, Ph.D. >> Research Associate >> University of Colorado, Boulder >> > > > > -- > Jesse Stombaugh, Ph.D. > Research Associate > University of Colorado, Boulder >

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Re: [mg-rast] mg-rast ftp upload site...
by Jesse Stombaugh 08 Apr '11

08 Apr '11

Hey Jared, So I have uploaded 4 zipped files along with 4 mapping files associated to each zip file. The files include 16S and metagenomic sequences which are defined in each checksum mapping file, along with the project_name that should be associated with each set of samples. Files included: Mammal.16S.Data.zip Mammal.MG.Data.zip CRBM.16S.Data.zip CRBM.MG.Data.zip Mammal.16S.checkSum.txt Mammal.MG.checkSum.txt CRBM.16S.checkSum.txt CRBM.MG.checkSum.txt The 16S samples can be processed through your 16S pipeline and the metagenomic samples have already been screened and dereplicated, so run it through the same pipeline as Tanya's data. Let me know if you have further questions, Jesse On Fri, Apr 8, 2011 at 12:31 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: > I will be uploading Brian's data shortly, and then we will send his > metadata through our DB in the afternoon. > > -Jesse > > > On Fri, Apr 8, 2011 at 12:29 PM, Jared Wilkening < > jared.wilkening(a)gmail.com> wrote: > >> Yesterday we talked about two datasets. Obviously we have tanya's but what >> is the status of the other? >> >> Jared >> >> >> On Fri, Apr 8, 2011 at 1:08 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: >> >>> Thanks Jared! >>> >>> >>> On Fri, Apr 8, 2011 at 12:05 PM, Jared Wilkening < >>> jared.wilkening(a)gmail.com> wrote: >>> >>>> Jesse, >>>> >>>> The jobs have all been create with you as the owner and are visible to >>>> you from the browse page. Currently all of them are at the point of sims >>>> calculation and should complete in a few hours. >>>> >>>> I ended up submitting Amz10baby twice by accident so we should just not >>>> include the duplicate in the project. Below are the job numbers. >>>> >>>> 20716 Amz10baby (dup) >>>> 20717 Amz10baby >>>> 20718 Amz1baby >>>> 20719 Amz1teenF >>>> 20720 Amz2adltF >>>> 20721 Amz2infF >>>> 20722 Amz4chldM1 >>>> 20723 Amz4chldM2 >>>> 20724 Amz5chldF1 >>>> 20725 Amz5chldF2 >>>> 20726 Amz5teenF >>>> 20727 Amz7adltF >>>> 20728 Amz7eldM >>>> 20729 Amz9baby >>>> 20730 AmzC14infF >>>> 20731 AmzC15infF >>>> 20732 AmzC1babyF2 >>>> 20733 AmzC2babyF >>>> 20734 AmzC3babyF >>>> 20735 AmzC5adltF >>>> 20736 AmzC5chldF >>>> 20737 AmzC5chldM >>>> 20738 F3T1pre4 >>>> 20739 F3T2pre4 >>>> 20740 F4T1pre4 >>>> 20741 F4T2pre4 >>>> 20742 h10A.1 >>>> 20743 h10B.1 >>>> 20744 h10M >>>> 20745 h121A.1 >>>> 20746 h121B.1 >>>> 20747 h209A.2 >>>> 20748 h209B.2 >>>> 20749 h257A.1 >>>> 20750 h257B.1 >>>> 20751 h257M.2 >>>> 20752 h259A.1 >>>> 20753 h259B.1 >>>> 20754 h301A.1 >>>> 20755 h301B.1 >>>> 20756 h301M.1 >>>> 20757 h37A.1 >>>> 20758 h37B.1 >>>> 20759 h37M >>>> 20760 h47A.1 >>>> 20761 h47B.1 >>>> 20762 h95A.1 >>>> 20763 h95B.1 >>>> 20764 h95M >>>> 20765 ITS_d371_12mo >>>> 20766 USBldChld10 >>>> 20767 USBldChld2 >>>> 20768 USBldChld4 >>>> 20769 USBldChld5 >>>> 20770 USBldChld8 >>>> 20771 USchp18Child >>>> 20772 USchp18Mom >>>> 20773 USchp33ChildA >>>> 20774 USchp33ChildB >>>> 20775 USchp33Mom >>>> 20776 USchp60Infant >>>> 20777 USchp60Mom >>>> 20778 USinfTw1.1 >>>> 20779 USinfTw1.2 >>>> 20780 USinfTw10.1 >>>> 20781 USinfTw10.2 >>>> 20782 USinfTw11.1 >>>> 20783 USinfTw11.2 >>>> 20784 USinfTw12.1 >>>> 20785 USinfTw12.2 >>>> 20786 USinfTw13.1 >>>> 20787 USinfTw13.2 >>>> 20788 USinfTw15.1 >>>> 20789 USinfTw15.2 >>>> 20790 USinfTw16.1 >>>> 20791 USinfTw16.2 >>>> 20792 USinfTw17.1 >>>> 20793 USinfTw17.2 >>>> 20794 USinfTw18.1 >>>> 20795 USinfTw18.2 >>>> 20796 USinfTw19.1 >>>> 20797 USinfTw19.2 >>>> 20798 USinfTw2.1 >>>> 20799 USinfTw2.2 >>>> 20800 USinfTw20.1 >>>> 20801 USinfTw20.2 >>>> 20802 USinfTw21.1 >>>> 20803 USinfTw21.2 >>>> 20804 USinfTw3.1 >>>> 20805 USinfTw3.2 >>>> 20806 USinfTw4.1 >>>> 20807 USinfTw4.2 >>>> 20808 USinfTw5.1 >>>> 20809 USinfTw5.2 >>>> 20810 USinfTw6.1 >>>> 20811 USinfTw6.2 >>>> 20812 USinfTw7.1 >>>> 20813 USinfTw7.2 >>>> 20814 USinfTw8.1 >>>> 20815 USinfTw8.2 >>>> 20816 USinfTw9.1 >>>> 20817 USinfTw9.2 >>>> 20818 USts1.M1 >>>> 20819 USts1.T1 >>>> 20820 USts1.T2 >>>> 20821 USts2.M1 >>>> 20822 USts2.T1 >>>> 20823 USts2.T2 >>>> 20824 USts3.M1 >>>> 20825 USts3.T1 >>>> 20826 USts3.T2 >>>> >>>> >>>> On Fri, Apr 8, 2011 at 12:15 PM, Jesse Stombaugh <jistombaugh(a)gmail.com >>>> > wrote: >>>> >>>>> I suggest keeping either me or Tanya/Brian as the owner and share the >>>>> data between us, since I want to monitor their data processing and be able >>>>> to assist them with analyses, if necessary. >>>>> >>>>> -Jesse >>>>> >>>>> >>>>> On Fri, Apr 8, 2011 at 11:06 AM, Andreas Wilke <wilke(a)mcs.anl.gov>wrote: >>>>> >>>>>> Hi Doug , Brian , Tanya >>>>>> >>>>>> thanks for the logfile. I checked some entries and they are looking >>>>>> good but I will go through the logfile thoroughly. >>>>>> >>>>>> You need an account to view the private data , if you don't have one >>>>>> please go to >>>>>> >>>>>> metagenomics.anl.gov/metagenomics.cgi?page=Register >>>>>> >>>>>> and request a login. I need your login information to give you >>>>>> ownership of your data. >>>>>> >>>>>> Andreas >>>>>> >>>>>> >>>>>> >>>>>> On Apr 8, 2011, at 6:47 PM, Doug Wendel wrote: >>>>>> >>>>>> Data has been sent... Andreas, here's the log. >>>>>> >>>>>> <tanya_output.txt.zip> >>>>>> >>>>>> >>>>>> Andreas Wilke >>>>>> Argonne National Laboratory >>>>>> Mathematics and Computer Science Division >>>>>> Bldg. 240 , 4F8 >>>>>> 9700 South Cass Avenue >>>>>> Argonne, IL 60439 >>>>>> (630) 252-3190 (phone) >>>>>> (630) 252-5986.(fax) >>>>>> >>>>>> >>>>> >>>>> >>>>> -- >>>>> Jesse Stombaugh, Ph.D. >>>>> Research Associate >>>>> University of Colorado, Boulder >>>>> >>>> >>>> >>> >>> >>> -- >>> Jesse Stombaugh, Ph.D. >>> Research Associate >>> University of Colorado, Boulder >>> >> >> > > > -- > Jesse Stombaugh, Ph.D. > Research Associate > University of Colorado, Boulder > -- Jesse Stombaugh, Ph.D. Research Associate University of Colorado, Boulder

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Re: [mg-rast] mg-rast ftp upload site...
by Jesse Stombaugh 08 Apr '11

08 Apr '11

I will be uploading Brian's data shortly, and then we will send his metadata through our DB in the afternoon. -Jesse On Fri, Apr 8, 2011 at 12:29 PM, Jared Wilkening <jared.wilkening(a)gmail.com>wrote: > Yesterday we talked about two datasets. Obviously we have tanya's but what > is the status of the other? > > Jared > > > On Fri, Apr 8, 2011 at 1:08 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: > >> Thanks Jared! >> >> >> On Fri, Apr 8, 2011 at 12:05 PM, Jared Wilkening < >> jared.wilkening(a)gmail.com> wrote: >> >>> Jesse, >>> >>> The jobs have all been create with you as the owner and are visible to >>> you from the browse page. Currently all of them are at the point of sims >>> calculation and should complete in a few hours. >>> >>> I ended up submitting Amz10baby twice by accident so we should just not >>> include the duplicate in the project. Below are the job numbers. >>> >>> 20716 Amz10baby (dup) >>> 20717 Amz10baby >>> 20718 Amz1baby >>> 20719 Amz1teenF >>> 20720 Amz2adltF >>> 20721 Amz2infF >>> 20722 Amz4chldM1 >>> 20723 Amz4chldM2 >>> 20724 Amz5chldF1 >>> 20725 Amz5chldF2 >>> 20726 Amz5teenF >>> 20727 Amz7adltF >>> 20728 Amz7eldM >>> 20729 Amz9baby >>> 20730 AmzC14infF >>> 20731 AmzC15infF >>> 20732 AmzC1babyF2 >>> 20733 AmzC2babyF >>> 20734 AmzC3babyF >>> 20735 AmzC5adltF >>> 20736 AmzC5chldF >>> 20737 AmzC5chldM >>> 20738 F3T1pre4 >>> 20739 F3T2pre4 >>> 20740 F4T1pre4 >>> 20741 F4T2pre4 >>> 20742 h10A.1 >>> 20743 h10B.1 >>> 20744 h10M >>> 20745 h121A.1 >>> 20746 h121B.1 >>> 20747 h209A.2 >>> 20748 h209B.2 >>> 20749 h257A.1 >>> 20750 h257B.1 >>> 20751 h257M.2 >>> 20752 h259A.1 >>> 20753 h259B.1 >>> 20754 h301A.1 >>> 20755 h301B.1 >>> 20756 h301M.1 >>> 20757 h37A.1 >>> 20758 h37B.1 >>> 20759 h37M >>> 20760 h47A.1 >>> 20761 h47B.1 >>> 20762 h95A.1 >>> 20763 h95B.1 >>> 20764 h95M >>> 20765 ITS_d371_12mo >>> 20766 USBldChld10 >>> 20767 USBldChld2 >>> 20768 USBldChld4 >>> 20769 USBldChld5 >>> 20770 USBldChld8 >>> 20771 USchp18Child >>> 20772 USchp18Mom >>> 20773 USchp33ChildA >>> 20774 USchp33ChildB >>> 20775 USchp33Mom >>> 20776 USchp60Infant >>> 20777 USchp60Mom >>> 20778 USinfTw1.1 >>> 20779 USinfTw1.2 >>> 20780 USinfTw10.1 >>> 20781 USinfTw10.2 >>> 20782 USinfTw11.1 >>> 20783 USinfTw11.2 >>> 20784 USinfTw12.1 >>> 20785 USinfTw12.2 >>> 20786 USinfTw13.1 >>> 20787 USinfTw13.2 >>> 20788 USinfTw15.1 >>> 20789 USinfTw15.2 >>> 20790 USinfTw16.1 >>> 20791 USinfTw16.2 >>> 20792 USinfTw17.1 >>> 20793 USinfTw17.2 >>> 20794 USinfTw18.1 >>> 20795 USinfTw18.2 >>> 20796 USinfTw19.1 >>> 20797 USinfTw19.2 >>> 20798 USinfTw2.1 >>> 20799 USinfTw2.2 >>> 20800 USinfTw20.1 >>> 20801 USinfTw20.2 >>> 20802 USinfTw21.1 >>> 20803 USinfTw21.2 >>> 20804 USinfTw3.1 >>> 20805 USinfTw3.2 >>> 20806 USinfTw4.1 >>> 20807 USinfTw4.2 >>> 20808 USinfTw5.1 >>> 20809 USinfTw5.2 >>> 20810 USinfTw6.1 >>> 20811 USinfTw6.2 >>> 20812 USinfTw7.1 >>> 20813 USinfTw7.2 >>> 20814 USinfTw8.1 >>> 20815 USinfTw8.2 >>> 20816 USinfTw9.1 >>> 20817 USinfTw9.2 >>> 20818 USts1.M1 >>> 20819 USts1.T1 >>> 20820 USts1.T2 >>> 20821 USts2.M1 >>> 20822 USts2.T1 >>> 20823 USts2.T2 >>> 20824 USts3.M1 >>> 20825 USts3.T1 >>> 20826 USts3.T2 >>> >>> >>> On Fri, Apr 8, 2011 at 12:15 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: >>> >>>> I suggest keeping either me or Tanya/Brian as the owner and share the >>>> data between us, since I want to monitor their data processing and be able >>>> to assist them with analyses, if necessary. >>>> >>>> -Jesse >>>> >>>> >>>> On Fri, Apr 8, 2011 at 11:06 AM, Andreas Wilke <wilke(a)mcs.anl.gov>wrote: >>>> >>>>> Hi Doug , Brian , Tanya >>>>> >>>>> thanks for the logfile. I checked some entries and they are looking >>>>> good but I will go through the logfile thoroughly. >>>>> >>>>> You need an account to view the private data , if you don't have one >>>>> please go to >>>>> >>>>> metagenomics.anl.gov/metagenomics.cgi?page=Register >>>>> >>>>> and request a login. I need your login information to give you >>>>> ownership of your data. >>>>> >>>>> Andreas >>>>> >>>>> >>>>> >>>>> On Apr 8, 2011, at 6:47 PM, Doug Wendel wrote: >>>>> >>>>> Data has been sent... Andreas, here's the log. >>>>> >>>>> <tanya_output.txt.zip> >>>>> >>>>> >>>>> Andreas Wilke >>>>> Argonne National Laboratory >>>>> Mathematics and Computer Science Division >>>>> Bldg. 240 , 4F8 >>>>> 9700 South Cass Avenue >>>>> Argonne, IL 60439 >>>>> (630) 252-3190 (phone) >>>>> (630) 252-5986.(fax) >>>>> >>>>> >>>> >>>> >>>> -- >>>> Jesse Stombaugh, Ph.D. >>>> Research Associate >>>> University of Colorado, Boulder >>>> >>> >>> >> >> >> -- >> Jesse Stombaugh, Ph.D. >> Research Associate >> University of Colorado, Boulder >> > > -- Jesse Stombaugh, Ph.D. Research Associate University of Colorado, Boulder

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Re: [mg-rast] mg-rast ftp upload site...
by Jared Wilkening 08 Apr '11

08 Apr '11

Yesterday we talked about two datasets. Obviously we have tanya's but what is the status of the other? Jared On Fri, Apr 8, 2011 at 1:08 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: > Thanks Jared! > > > On Fri, Apr 8, 2011 at 12:05 PM, Jared Wilkening < > jared.wilkening(a)gmail.com> wrote: > >> Jesse, >> >> The jobs have all been create with you as the owner and are visible to you >> from the browse page. Currently all of them are at the point of sims >> calculation and should complete in a few hours. >> >> I ended up submitting Amz10baby twice by accident so we should just not >> include the duplicate in the project. Below are the job numbers. >> >> 20716 Amz10baby (dup) >> 20717 Amz10baby >> 20718 Amz1baby >> 20719 Amz1teenF >> 20720 Amz2adltF >> 20721 Amz2infF >> 20722 Amz4chldM1 >> 20723 Amz4chldM2 >> 20724 Amz5chldF1 >> 20725 Amz5chldF2 >> 20726 Amz5teenF >> 20727 Amz7adltF >> 20728 Amz7eldM >> 20729 Amz9baby >> 20730 AmzC14infF >> 20731 AmzC15infF >> 20732 AmzC1babyF2 >> 20733 AmzC2babyF >> 20734 AmzC3babyF >> 20735 AmzC5adltF >> 20736 AmzC5chldF >> 20737 AmzC5chldM >> 20738 F3T1pre4 >> 20739 F3T2pre4 >> 20740 F4T1pre4 >> 20741 F4T2pre4 >> 20742 h10A.1 >> 20743 h10B.1 >> 20744 h10M >> 20745 h121A.1 >> 20746 h121B.1 >> 20747 h209A.2 >> 20748 h209B.2 >> 20749 h257A.1 >> 20750 h257B.1 >> 20751 h257M.2 >> 20752 h259A.1 >> 20753 h259B.1 >> 20754 h301A.1 >> 20755 h301B.1 >> 20756 h301M.1 >> 20757 h37A.1 >> 20758 h37B.1 >> 20759 h37M >> 20760 h47A.1 >> 20761 h47B.1 >> 20762 h95A.1 >> 20763 h95B.1 >> 20764 h95M >> 20765 ITS_d371_12mo >> 20766 USBldChld10 >> 20767 USBldChld2 >> 20768 USBldChld4 >> 20769 USBldChld5 >> 20770 USBldChld8 >> 20771 USchp18Child >> 20772 USchp18Mom >> 20773 USchp33ChildA >> 20774 USchp33ChildB >> 20775 USchp33Mom >> 20776 USchp60Infant >> 20777 USchp60Mom >> 20778 USinfTw1.1 >> 20779 USinfTw1.2 >> 20780 USinfTw10.1 >> 20781 USinfTw10.2 >> 20782 USinfTw11.1 >> 20783 USinfTw11.2 >> 20784 USinfTw12.1 >> 20785 USinfTw12.2 >> 20786 USinfTw13.1 >> 20787 USinfTw13.2 >> 20788 USinfTw15.1 >> 20789 USinfTw15.2 >> 20790 USinfTw16.1 >> 20791 USinfTw16.2 >> 20792 USinfTw17.1 >> 20793 USinfTw17.2 >> 20794 USinfTw18.1 >> 20795 USinfTw18.2 >> 20796 USinfTw19.1 >> 20797 USinfTw19.2 >> 20798 USinfTw2.1 >> 20799 USinfTw2.2 >> 20800 USinfTw20.1 >> 20801 USinfTw20.2 >> 20802 USinfTw21.1 >> 20803 USinfTw21.2 >> 20804 USinfTw3.1 >> 20805 USinfTw3.2 >> 20806 USinfTw4.1 >> 20807 USinfTw4.2 >> 20808 USinfTw5.1 >> 20809 USinfTw5.2 >> 20810 USinfTw6.1 >> 20811 USinfTw6.2 >> 20812 USinfTw7.1 >> 20813 USinfTw7.2 >> 20814 USinfTw8.1 >> 20815 USinfTw8.2 >> 20816 USinfTw9.1 >> 20817 USinfTw9.2 >> 20818 USts1.M1 >> 20819 USts1.T1 >> 20820 USts1.T2 >> 20821 USts2.M1 >> 20822 USts2.T1 >> 20823 USts2.T2 >> 20824 USts3.M1 >> 20825 USts3.T1 >> 20826 USts3.T2 >> >> >> On Fri, Apr 8, 2011 at 12:15 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: >> >>> I suggest keeping either me or Tanya/Brian as the owner and share the >>> data between us, since I want to monitor their data processing and be able >>> to assist them with analyses, if necessary. >>> >>> -Jesse >>> >>> >>> On Fri, Apr 8, 2011 at 11:06 AM, Andreas Wilke <wilke(a)mcs.anl.gov>wrote: >>> >>>> Hi Doug , Brian , Tanya >>>> >>>> thanks for the logfile. I checked some entries and they are looking >>>> good but I will go through the logfile thoroughly. >>>> >>>> You need an account to view the private data , if you don't have one >>>> please go to >>>> >>>> metagenomics.anl.gov/metagenomics.cgi?page=Register >>>> >>>> and request a login. I need your login information to give you ownership >>>> of your data. >>>> >>>> Andreas >>>> >>>> >>>> >>>> On Apr 8, 2011, at 6:47 PM, Doug Wendel wrote: >>>> >>>> Data has been sent... Andreas, here's the log. >>>> >>>> <tanya_output.txt.zip> >>>> >>>> >>>> Andreas Wilke >>>> Argonne National Laboratory >>>> Mathematics and Computer Science Division >>>> Bldg. 240 , 4F8 >>>> 9700 South Cass Avenue >>>> Argonne, IL 60439 >>>> (630) 252-3190 (phone) >>>> (630) 252-5986.(fax) >>>> >>>> >>> >>> >>> -- >>> Jesse Stombaugh, Ph.D. >>> Research Associate >>> University of Colorado, Boulder >>> >> >> > > > -- > Jesse Stombaugh, Ph.D. > Research Associate > University of Colorado, Boulder >

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Re: [mg-rast] mg-rast ftp upload site...
by Jesse Stombaugh 08 Apr '11

08 Apr '11

Thanks Jared! On Fri, Apr 8, 2011 at 12:05 PM, Jared Wilkening <jared.wilkening(a)gmail.com>wrote: > Jesse, > > The jobs have all been create with you as the owner and are visible to you > from the browse page. Currently all of them are at the point of sims > calculation and should complete in a few hours. > > I ended up submitting Amz10baby twice by accident so we should just not > include the duplicate in the project. Below are the job numbers. > > 20716 Amz10baby (dup) > 20717 Amz10baby > 20718 Amz1baby > 20719 Amz1teenF > 20720 Amz2adltF > 20721 Amz2infF > 20722 Amz4chldM1 > 20723 Amz4chldM2 > 20724 Amz5chldF1 > 20725 Amz5chldF2 > 20726 Amz5teenF > 20727 Amz7adltF > 20728 Amz7eldM > 20729 Amz9baby > 20730 AmzC14infF > 20731 AmzC15infF > 20732 AmzC1babyF2 > 20733 AmzC2babyF > 20734 AmzC3babyF > 20735 AmzC5adltF > 20736 AmzC5chldF > 20737 AmzC5chldM > 20738 F3T1pre4 > 20739 F3T2pre4 > 20740 F4T1pre4 > 20741 F4T2pre4 > 20742 h10A.1 > 20743 h10B.1 > 20744 h10M > 20745 h121A.1 > 20746 h121B.1 > 20747 h209A.2 > 20748 h209B.2 > 20749 h257A.1 > 20750 h257B.1 > 20751 h257M.2 > 20752 h259A.1 > 20753 h259B.1 > 20754 h301A.1 > 20755 h301B.1 > 20756 h301M.1 > 20757 h37A.1 > 20758 h37B.1 > 20759 h37M > 20760 h47A.1 > 20761 h47B.1 > 20762 h95A.1 > 20763 h95B.1 > 20764 h95M > 20765 ITS_d371_12mo > 20766 USBldChld10 > 20767 USBldChld2 > 20768 USBldChld4 > 20769 USBldChld5 > 20770 USBldChld8 > 20771 USchp18Child > 20772 USchp18Mom > 20773 USchp33ChildA > 20774 USchp33ChildB > 20775 USchp33Mom > 20776 USchp60Infant > 20777 USchp60Mom > 20778 USinfTw1.1 > 20779 USinfTw1.2 > 20780 USinfTw10.1 > 20781 USinfTw10.2 > 20782 USinfTw11.1 > 20783 USinfTw11.2 > 20784 USinfTw12.1 > 20785 USinfTw12.2 > 20786 USinfTw13.1 > 20787 USinfTw13.2 > 20788 USinfTw15.1 > 20789 USinfTw15.2 > 20790 USinfTw16.1 > 20791 USinfTw16.2 > 20792 USinfTw17.1 > 20793 USinfTw17.2 > 20794 USinfTw18.1 > 20795 USinfTw18.2 > 20796 USinfTw19.1 > 20797 USinfTw19.2 > 20798 USinfTw2.1 > 20799 USinfTw2.2 > 20800 USinfTw20.1 > 20801 USinfTw20.2 > 20802 USinfTw21.1 > 20803 USinfTw21.2 > 20804 USinfTw3.1 > 20805 USinfTw3.2 > 20806 USinfTw4.1 > 20807 USinfTw4.2 > 20808 USinfTw5.1 > 20809 USinfTw5.2 > 20810 USinfTw6.1 > 20811 USinfTw6.2 > 20812 USinfTw7.1 > 20813 USinfTw7.2 > 20814 USinfTw8.1 > 20815 USinfTw8.2 > 20816 USinfTw9.1 > 20817 USinfTw9.2 > 20818 USts1.M1 > 20819 USts1.T1 > 20820 USts1.T2 > 20821 USts2.M1 > 20822 USts2.T1 > 20823 USts2.T2 > 20824 USts3.M1 > 20825 USts3.T1 > 20826 USts3.T2 > > > On Fri, Apr 8, 2011 at 12:15 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: > >> I suggest keeping either me or Tanya/Brian as the owner and share the data >> between us, since I want to monitor their data processing and be able to >> assist them with analyses, if necessary. >> >> -Jesse >> >> >> On Fri, Apr 8, 2011 at 11:06 AM, Andreas Wilke <wilke(a)mcs.anl.gov> wrote: >> >>> Hi Doug , Brian , Tanya >>> >>> thanks for the logfile. I checked some entries and they are looking good >>> but I will go through the logfile thoroughly. >>> >>> You need an account to view the private data , if you don't have one >>> please go to >>> >>> metagenomics.anl.gov/metagenomics.cgi?page=Register >>> >>> and request a login. I need your login information to give you ownership >>> of your data. >>> >>> Andreas >>> >>> >>> >>> On Apr 8, 2011, at 6:47 PM, Doug Wendel wrote: >>> >>> Data has been sent... Andreas, here's the log. >>> >>> <tanya_output.txt.zip> >>> >>> >>> Andreas Wilke >>> Argonne National Laboratory >>> Mathematics and Computer Science Division >>> Bldg. 240 , 4F8 >>> 9700 South Cass Avenue >>> Argonne, IL 60439 >>> (630) 252-3190 (phone) >>> (630) 252-5986.(fax) >>> >>> >> >> >> -- >> Jesse Stombaugh, Ph.D. >> Research Associate >> University of Colorado, Boulder >> > > -- Jesse Stombaugh, Ph.D. Research Associate University of Colorado, Boulder

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Re: [mg-rast] mg-rast ftp upload site...
by Jared Wilkening 08 Apr '11

08 Apr '11

Also as we discussed yesterday no sequences will be filtered by length, dereplication or human screening from these samples. Cheers, Jared On Fri, Apr 8, 2011 at 1:05 PM, Jared Wilkening <jared.wilkening(a)gmail.com>wrote: > Jesse, > > The jobs have all been create with you as the owner and are visible to you > from the browse page. Currently all of them are at the point of sims > calculation and should complete in a few hours. > > I ended up submitting Amz10baby twice by accident so we should just not > include the duplicate in the project. Below are the job numbers. > > 20716 Amz10baby (dup) > 20717 Amz10baby > 20718 Amz1baby > 20719 Amz1teenF > 20720 Amz2adltF > 20721 Amz2infF > 20722 Amz4chldM1 > 20723 Amz4chldM2 > 20724 Amz5chldF1 > 20725 Amz5chldF2 > 20726 Amz5teenF > 20727 Amz7adltF > 20728 Amz7eldM > 20729 Amz9baby > 20730 AmzC14infF > 20731 AmzC15infF > 20732 AmzC1babyF2 > 20733 AmzC2babyF > 20734 AmzC3babyF > 20735 AmzC5adltF > 20736 AmzC5chldF > 20737 AmzC5chldM > 20738 F3T1pre4 > 20739 F3T2pre4 > 20740 F4T1pre4 > 20741 F4T2pre4 > 20742 h10A.1 > 20743 h10B.1 > 20744 h10M > 20745 h121A.1 > 20746 h121B.1 > 20747 h209A.2 > 20748 h209B.2 > 20749 h257A.1 > 20750 h257B.1 > 20751 h257M.2 > 20752 h259A.1 > 20753 h259B.1 > 20754 h301A.1 > 20755 h301B.1 > 20756 h301M.1 > 20757 h37A.1 > 20758 h37B.1 > 20759 h37M > 20760 h47A.1 > 20761 h47B.1 > 20762 h95A.1 > 20763 h95B.1 > 20764 h95M > 20765 ITS_d371_12mo > 20766 USBldChld10 > 20767 USBldChld2 > 20768 USBldChld4 > 20769 USBldChld5 > 20770 USBldChld8 > 20771 USchp18Child > 20772 USchp18Mom > 20773 USchp33ChildA > 20774 USchp33ChildB > 20775 USchp33Mom > 20776 USchp60Infant > 20777 USchp60Mom > 20778 USinfTw1.1 > 20779 USinfTw1.2 > 20780 USinfTw10.1 > 20781 USinfTw10.2 > 20782 USinfTw11.1 > 20783 USinfTw11.2 > 20784 USinfTw12.1 > 20785 USinfTw12.2 > 20786 USinfTw13.1 > 20787 USinfTw13.2 > 20788 USinfTw15.1 > 20789 USinfTw15.2 > 20790 USinfTw16.1 > 20791 USinfTw16.2 > 20792 USinfTw17.1 > 20793 USinfTw17.2 > 20794 USinfTw18.1 > 20795 USinfTw18.2 > 20796 USinfTw19.1 > 20797 USinfTw19.2 > 20798 USinfTw2.1 > 20799 USinfTw2.2 > 20800 USinfTw20.1 > 20801 USinfTw20.2 > 20802 USinfTw21.1 > 20803 USinfTw21.2 > 20804 USinfTw3.1 > 20805 USinfTw3.2 > 20806 USinfTw4.1 > 20807 USinfTw4.2 > 20808 USinfTw5.1 > 20809 USinfTw5.2 > 20810 USinfTw6.1 > 20811 USinfTw6.2 > 20812 USinfTw7.1 > 20813 USinfTw7.2 > 20814 USinfTw8.1 > 20815 USinfTw8.2 > 20816 USinfTw9.1 > 20817 USinfTw9.2 > 20818 USts1.M1 > 20819 USts1.T1 > 20820 USts1.T2 > 20821 USts2.M1 > 20822 USts2.T1 > 20823 USts2.T2 > 20824 USts3.M1 > 20825 USts3.T1 > 20826 USts3.T2 > > > On Fri, Apr 8, 2011 at 12:15 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: > >> I suggest keeping either me or Tanya/Brian as the owner and share the data >> between us, since I want to monitor their data processing and be able to >> assist them with analyses, if necessary. >> >> -Jesse >> >> >> On Fri, Apr 8, 2011 at 11:06 AM, Andreas Wilke <wilke(a)mcs.anl.gov> wrote: >> >>> Hi Doug , Brian , Tanya >>> >>> thanks for the logfile. I checked some entries and they are looking good >>> but I will go through the logfile thoroughly. >>> >>> You need an account to view the private data , if you don't have one >>> please go to >>> >>> metagenomics.anl.gov/metagenomics.cgi?page=Register >>> >>> and request a login. I need your login information to give you ownership >>> of your data. >>> >>> Andreas >>> >>> >>> >>> On Apr 8, 2011, at 6:47 PM, Doug Wendel wrote: >>> >>> Data has been sent... Andreas, here's the log. >>> >>> <tanya_output.txt.zip> >>> >>> >>> Andreas Wilke >>> Argonne National Laboratory >>> Mathematics and Computer Science Division >>> Bldg. 240 , 4F8 >>> 9700 South Cass Avenue >>> Argonne, IL 60439 >>> (630) 252-3190 (phone) >>> (630) 252-5986.(fax) >>> >>> >> >> >> -- >> Jesse Stombaugh, Ph.D. >> Research Associate >> University of Colorado, Boulder >> > >

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Re: [mg-rast] mg-rast ftp upload site...
by Jared Wilkening 08 Apr '11

08 Apr '11

Jesse, The jobs have all been create with you as the owner and are visible to you from the browse page. Currently all of them are at the point of sims calculation and should complete in a few hours. I ended up submitting Amz10baby twice by accident so we should just not include the duplicate in the project. Below are the job numbers. 20716 Amz10baby (dup) 20717 Amz10baby 20718 Amz1baby 20719 Amz1teenF 20720 Amz2adltF 20721 Amz2infF 20722 Amz4chldM1 20723 Amz4chldM2 20724 Amz5chldF1 20725 Amz5chldF2 20726 Amz5teenF 20727 Amz7adltF 20728 Amz7eldM 20729 Amz9baby 20730 AmzC14infF 20731 AmzC15infF 20732 AmzC1babyF2 20733 AmzC2babyF 20734 AmzC3babyF 20735 AmzC5adltF 20736 AmzC5chldF 20737 AmzC5chldM 20738 F3T1pre4 20739 F3T2pre4 20740 F4T1pre4 20741 F4T2pre4 20742 h10A.1 20743 h10B.1 20744 h10M 20745 h121A.1 20746 h121B.1 20747 h209A.2 20748 h209B.2 20749 h257A.1 20750 h257B.1 20751 h257M.2 20752 h259A.1 20753 h259B.1 20754 h301A.1 20755 h301B.1 20756 h301M.1 20757 h37A.1 20758 h37B.1 20759 h37M 20760 h47A.1 20761 h47B.1 20762 h95A.1 20763 h95B.1 20764 h95M 20765 ITS_d371_12mo 20766 USBldChld10 20767 USBldChld2 20768 USBldChld4 20769 USBldChld5 20770 USBldChld8 20771 USchp18Child 20772 USchp18Mom 20773 USchp33ChildA 20774 USchp33ChildB 20775 USchp33Mom 20776 USchp60Infant 20777 USchp60Mom 20778 USinfTw1.1 20779 USinfTw1.2 20780 USinfTw10.1 20781 USinfTw10.2 20782 USinfTw11.1 20783 USinfTw11.2 20784 USinfTw12.1 20785 USinfTw12.2 20786 USinfTw13.1 20787 USinfTw13.2 20788 USinfTw15.1 20789 USinfTw15.2 20790 USinfTw16.1 20791 USinfTw16.2 20792 USinfTw17.1 20793 USinfTw17.2 20794 USinfTw18.1 20795 USinfTw18.2 20796 USinfTw19.1 20797 USinfTw19.2 20798 USinfTw2.1 20799 USinfTw2.2 20800 USinfTw20.1 20801 USinfTw20.2 20802 USinfTw21.1 20803 USinfTw21.2 20804 USinfTw3.1 20805 USinfTw3.2 20806 USinfTw4.1 20807 USinfTw4.2 20808 USinfTw5.1 20809 USinfTw5.2 20810 USinfTw6.1 20811 USinfTw6.2 20812 USinfTw7.1 20813 USinfTw7.2 20814 USinfTw8.1 20815 USinfTw8.2 20816 USinfTw9.1 20817 USinfTw9.2 20818 USts1.M1 20819 USts1.T1 20820 USts1.T2 20821 USts2.M1 20822 USts2.T1 20823 USts2.T2 20824 USts3.M1 20825 USts3.T1 20826 USts3.T2 On Fri, Apr 8, 2011 at 12:15 PM, Jesse Stombaugh <jistombaugh(a)gmail.com>wrote: > I suggest keeping either me or Tanya/Brian as the owner and share the data > between us, since I want to monitor their data processing and be able to > assist them with analyses, if necessary. > > -Jesse > > > On Fri, Apr 8, 2011 at 11:06 AM, Andreas Wilke <wilke(a)mcs.anl.gov> wrote: > >> Hi Doug , Brian , Tanya >> >> thanks for the logfile. I checked some entries and they are looking good >> but I will go through the logfile thoroughly. >> >> You need an account to view the private data , if you don't have one >> please go to >> >> metagenomics.anl.gov/metagenomics.cgi?page=Register >> >> and request a login. I need your login information to give you ownership >> of your data. >> >> Andreas >> >> >> >> On Apr 8, 2011, at 6:47 PM, Doug Wendel wrote: >> >> Data has been sent... Andreas, here's the log. >> >> <tanya_output.txt.zip> >> >> >> Andreas Wilke >> Argonne National Laboratory >> Mathematics and Computer Science Division >> Bldg. 240 , 4F8 >> 9700 South Cass Avenue >> Argonne, IL 60439 >> (630) 252-3190 (phone) >> (630) 252-5986.(fax) >> >> > > > -- > Jesse Stombaugh, Ph.D. > Research Associate > University of Colorado, Boulder >

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Re: [mg-rast] mg-rast ftp upload site...
by Jesse Stombaugh 08 Apr '11

08 Apr '11

I suggest keeping either me or Tanya/Brian as the owner and share the data between us, since I want to monitor their data processing and be able to assist them with analyses, if necessary. -Jesse On Fri, Apr 8, 2011 at 11:06 AM, Andreas Wilke <wilke(a)mcs.anl.gov> wrote: > Hi Doug , Brian , Tanya > > thanks for the logfile. I checked some entries and they are looking good > but I will go through the logfile thoroughly. > > You need an account to view the private data , if you don't have one please > go to > > metagenomics.anl.gov/metagenomics.cgi?page=Register > > and request a login. I need your login information to give you ownership of > your data. > > Andreas > > > > On Apr 8, 2011, at 6:47 PM, Doug Wendel wrote: > > Data has been sent... Andreas, here's the log. > > <tanya_output.txt.zip> > > > Andreas Wilke > Argonne National Laboratory > Mathematics and Computer Science Division > Bldg. 240 , 4F8 > 9700 South Cass Avenue > Argonne, IL 60439 > (630) 252-3190 (phone) > (630) 252-5986.(fax) > > -- Jesse Stombaugh, Ph.D. Research Associate University of Colorado, Boulder

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