October 2013 - discuss - mailman3.cels.anl.gov

Greetings from Greece/Question about installing mpich2
by mark 20 Oct '13

20 Oct '13

Hello my name is Mark and im an undergraduate of computer science here in Greece. For my thesis i will have to use MPI for some cluster programming and i have to set it up on my machine to start some testing. I happens to use Debian Linux on my system and so i thought i would install MPICH using the apt package manager and continue from there. But after discussing this matter with my thesis prof, he said that this implementation of mpich through apt will not do for my job and i will have to go through the install manual and build mpich that way.It happens that my teacher isn't so familiar with my linux distribution and so he isn't sure about what he said ( about apt , etc). And so i ask for you opinion on that matter. How to build a fully functional mpich on debian linux? Using Apt ? Or using the install manual? Thank you for your time.

1 0

Re: [mpich-discuss] MPICH and pacman
by Wissam Khalil 19 Oct '13

19 Oct '13

founded that already thanks for that i just misread sth on the rep Regards Wissam Khalil On Oct 20, 2013 12:10 AM, "Jeff Hammond" <jeff.science(a)gmail.com> wrote: > lmgtfy.com pointed me to https://aur.archlinux.org/packages/mpich/ > > Jeff > > On Sat, Oct 19, 2013 at 10:19 AM, Wissam Khalil > <wissamy.khalil(a)gmail.com> wrote: > > hello guys, > > > > i am a student just started on parallel programming. > > i was wondering if anyone knows how to download MPICH using pacman. > > i am a linux arch user. > > > > Regards > > Wissam Khalil > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > -- > Jeff Hammond > jeff.science(a)gmail.com > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

1 0

Re: [mpich-discuss] MPICH and pacman
by Jeff Hammond 19 Oct '13

19 Oct '13

lmgtfy.com pointed me to https://aur.archlinux.org/packages/mpich/ Jeff On Sat, Oct 19, 2013 at 10:19 AM, Wissam Khalil <wissamy.khalil(a)gmail.com> wrote: > hello guys, > > i am a student just started on parallel programming. > i was wondering if anyone knows how to download MPICH using pacman. > i am a linux arch user. > > Regards > Wissam Khalil > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss -- Jeff Hammond jeff.science(a)gmail.com

1 0

MPICH and pacman
by Wissam Khalil 19 Oct '13

19 Oct '13

hello guys, i am a student just started on parallel programming. i was wondering if anyone knows how to download MPICH using pacman. i am a linux arch user. Regards Wissam Khalil

1 0

Re: [mpich-discuss] [mpich2-maint] Some Problem when using Jumpshot and Solution Wanted
by Rusty Lusk 18 Oct '13

18 Oct '13

How big is the log file you are trying to read? Rusty On Thursday,Apr 14, 2011, at 4:09 AM, 李敏 wrote: > Dear Sir, > I'am writing to reflect some problem when using the performance analysis tool Jumpshot of your Laboratory. > Jumpshot has huge advantage over the other performance analysis tool in terms of visualizing huge trace file and has faster process speed. But when I opened a slog2 trace file of 64M, it can't load the file normally. It reported error messages as follows: > Exception in thread "AWT-EventQueue-0" java.lang.OutOfMemoryError: Java heap space > at viewer.zoomable.ScaledSlider.setDefaultLabelTable(ScaledSlider.java:172) > at viewer.zoomable.ScaledSlider.setMaxLabel(ScaledSlider.java:186) > at viewer.zoomable.ScaledSlider.setMaxLabel(ScaledSlider.java:190) > at viewer.zoomable.RowAdjustments.initSlidersAndTextFields(RowAdjustments.java:161) > at viewer.timelines.TimelinePanel.init(TimelinePanel.java:393) > at viewer.timelines.TimelineFrame.init(TimelineFrame.java:57) > at viewer.first.LogFileOperations$1.finished(LogFileOperations.java:246) > at viewer.common.SwingWorker$1.run(SwingWorker.java:103) > at java.awt.event.InvocationEvent.dispatch(Unknown Source) > at java.awt.EventQueue.dispatchEvent(Unknown Source) > at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) > at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown So urce) > at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) > at java.awt.EventDispatchThread.pumpEvents(Unknown Source) > at java.awt.EventDispatchThread.pumpEvents(Unknown Source) > at java.awt.EventDispatchThread.run(Unknown Source) > > I thought the memory of JVM is not enough at first, so I set the prameter -Xmx4096m. But it didn't work either. So could you explain this problem for me and give the solution? I will appreciate a lot if you could spare a little time for my confusion. I'm looking forward to your reply. > yours sincerely > Sarah > > > _______________________________________________ > mpich2-maint mailing list > mpich2-maint(a)lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/mpich2-maint

1 0

Re: [mpich-discuss] MPICH 3.X
by Rajeev Thakur 18 Oct '13

18 Oct '13

There is a link to it at the very first line at http://www.mpich.org/downloads/ Rajeev On Oct 18, 2013, at 11:25 AM, Carney, Katherine D wrote: > Our Upstream Research Affiliate is requesting MPICH 3.X. On the product website it states the following: > > MPICH is distributed as source (with an open-source, freely available license). > > I can’t find the opensource license. Can you please send me a copy? > > > Thank you, > > Katie Carney > Software Analyst > ExxonMobil Global Services Company > EMIT/Services/Software Services > Office Phone: 713-680-7873 > 4550 Dacoma, GSC-BH4-1196J > Houston, TX 77092 > katherine.d.carney(a)exxonmobil.com > > <image001.png> > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

1 0

MPICH 3.X
by Carney, Katherine D 18 Oct '13

18 Oct '13

Our Upstream Research Affiliate is requesting MPICH 3.X. On the product website it states the following: MPICH is distributed as source (with an open-source, freely available license). I can't find the opensource license. Can you please send me a copy? Thank you, Katie Carney Software Analyst ExxonMobil Global Services Company EMIT/Services/Software Services Office Phone: 713-680-7873 4550 Dacoma, GSC-BH4-1196J Houston, TX 77092 katherine.d.carney(a)exxonmobil.com<mailto:[email protected]> [cid:[email protected]]<http://intratta.na.xom.com/emgs/emit/index.html>

1 0

Re: [mpich-discuss] IB support of mpich2
by Jeff Hammond 17 Oct '13

17 Oct '13

Try the latest MVAPICH. Jeff On Thu, Oct 17, 2013 at 8:46 PM, xihuang sun <sxhshare(a)gmail.com> wrote: > Hi, > I am using orangefs2.8.7 with Infiniband, now I want to have some tests > based on mpi, I'm not sure whether mpich2 supports IB network. if so, which > version above supports? > What about mpich version 3.0? > Besides, does anyone have a configuration example considering orangefs? > > Thanks. > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss -- Jeff Hammond jeff.science(a)gmail.com

1 0

IB support of mpich2
by xihuang sun 17 Oct '13

17 Oct '13

Hi, I am using orangefs2.8.7 with Infiniband, now I want to have some tests based on mpi, I'm not sure whether mpich2 supports IB network. if so, which version above supports? What about mpich version 3.0? Besides, does anyone have a configuration example considering orangefs? Thanks.

1 0

Re: [mpich-discuss] help compiling WRF model using intel compilers and mpich
by Reuti 17 Oct '13

17 Oct '13

Hi, Am 17.10.2013 um 23:59 schrieb Alen Arturo Dioses Avellaneda: > I am sorry because this is not topic of te group, but maybe anyone could help me. > I am trying to compile WRFmodel 3.4.1 using intel compilers (v 13.1.3) and MPICH-1.2.7p1. I had use intel compilers and mpich for BRAMS (Brazilian development on the Atmosferic Modeling System) model and works well. Looks like there is a forum for WRF: http://forum.wrfforum.com/ Nevertheless: MPICH 1.2.7p1 is quite old, please use the latest MPICH 3.0.4. -- Reuti > Frist, I had problems instaling netcdf 4.2 libraries, so I used netcdf 3.6.3 and compile without problems. The configure script works well but the compile script does not. I am sendin the compile.log document. > > Information about my PC, I have four processors Intel (R) Xeon (TM) CPU 3.06Hz, CentOS 5.9, uname -a (Linux localhost.localdomain 2.6.18-348.6.1.el5 #1 SMP Tue May 21 15:34:22 EDT 2013 i686 i686 i386 GNU/Linux). Also I use ssh conection without password. > > Information about the libraries, I compile the following libraries. ($STUFF=/home/Alen/brams/stuff) > > > intel compilers were compiler in > /opt/intel > > jpeg v6b: > CC=icc ./configure –-prefix=$STUFF > Make > Make install > Make install-lib > > zlib-1.1.4 > CC=icc ./configure – prefix=$STUFF > Make > Make install > > HDF4 v4.2r0 > F77=ifort CC=icc ./configure –prefix=$STUFF –with-jpeg=$STUFF –with-zlib=$STUFF > Make > Make install > > Mpich-1.2.7p1 > RSHCOMMAND=ssh FC=ifort F77=ifort F90=ifort CC=icc CXX=icpc ./configure --prefix=$STUFF > Make > Make install > > Netcdf 3.6.3 > export F77=ifort > export FC=ifort > export F90=ifort > export CC=icc > export CXX=icpc > ./configure --prefix=/usr/local/netcdf > make > make check > make install > > Finally, I want to thank you for any advice or help you can give me. > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

1 0