October 2016 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] Errors building MPICH on Windows 10 Ubuntu subsystem
by Jeff Hammond 11 Oct '16

11 Oct '16

On Tue, Oct 11, 2016 at 6:55 PM, Balaji, Pavan <balaji(a)anl.gov> wrote: > Folks, > > Damian is having a problem with autotools. This shouldn't have anything > to do with GCC. > > Sure, but "apt-get install mpich" is clearly the easy button here if we can make it work. Jeff > I'm curious as to why --disable-maintainer-mode is not helping since that > option should essentially disable Makefile.in's dependency on Makefile.am/ > configure.ac, etc. So even if the timestamps are broken, autotools > should never be called. > > -- Pavan > > > On Oct 12, 2016, at 6:06 AM, Jeff Hammond <jeff.science(a)gmail.com> > wrote: > > > > Because OpenCoarrays calls MPI from C, the possible Fortran ABI > variation across major versions of GCC should not be an issue. Damian > should be fine to apt-get install mpich and then use the resulting C > library. I imagine that cafc='mpicc -cc=gfortran-6' would work, but this > is just a guess. > > > > Intel recently approved Windows 10. If I can get the VM for this, I'll > try to debug this. > > > > Jeff > > > > On Tue, Oct 11, 2016 at 10:57 AM, Kenneth Raffenetti < > raffenet(a)mcs.anl.gov> wrote: > > mpicc and friends are wrappers around the regular gcc/g++/gfortran > compilers. If you have the version you want listed first in your PATH, > things will probably work as you want. You can test by running 'mpicc > -show' or 'mpicc -version' and check the underlying compiler. > > > > Ken > > > > > > On 10/11/2016 12:22 PM, Rob Latham wrote: > > > > > > On 10/11/2016 10:05 AM, Kenneth Raffenetti wrote: > > On 10/11/2016 09:45 AM, Damian Rouson wrote: > > > Also, if you have Ubuntu, can you simply apt-get install mpich? > > On this system, apt-get installs GCC 4.8. My goal is to support users > > of OpenCoarrays, which requires at least GCC 5.1.0 and preferably GCC > > 6.1.0. Is there a Debian dpkg file that I could use to install MPICH? > > > > Yes, try 'apt-get install mpich'. > > > > I think he's saying "apt-get install mpich" brings in gcc-4.8 as a > > dependency. > > > > Perhaps "apt-get source mpich" or maybe with the "-b" flag for > > bulid-dependencies, then re-building the debian package will get you > > what you need? > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > -- > > Jeff Hammond > > jeff.science(a)gmail.com > > http://jeffhammond.github.io/ > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > -- Jeff Hammond jeff.science(a)gmail.com http://jeffhammond.github.io/ _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Errors building MPICH on Windows 10 Ubuntu subsystem
by Balaji, Pavan 11 Oct '16

11 Oct '16

Folks, Damian is having a problem with autotools. This shouldn't have anything to do with GCC. I'm curious as to why --disable-maintainer-mode is not helping since that option should essentially disable Makefile.in's dependency on Makefile.am/configure.ac, etc. So even if the timestamps are broken, autotools should never be called. -- Pavan > On Oct 12, 2016, at 6:06 AM, Jeff Hammond <jeff.science(a)gmail.com> wrote: > > Because OpenCoarrays calls MPI from C, the possible Fortran ABI variation across major versions of GCC should not be an issue. Damian should be fine to apt-get install mpich and then use the resulting C library. I imagine that cafc='mpicc -cc=gfortran-6' would work, but this is just a guess. > > Intel recently approved Windows 10. If I can get the VM for this, I'll try to debug this. > > Jeff > > On Tue, Oct 11, 2016 at 10:57 AM, Kenneth Raffenetti <raffenet(a)mcs.anl.gov> wrote: > mpicc and friends are wrappers around the regular gcc/g++/gfortran compilers. If you have the version you want listed first in your PATH, things will probably work as you want. You can test by running 'mpicc -show' or 'mpicc -version' and check the underlying compiler. > > Ken > > > On 10/11/2016 12:22 PM, Rob Latham wrote: > > > On 10/11/2016 10:05 AM, Kenneth Raffenetti wrote: > On 10/11/2016 09:45 AM, Damian Rouson wrote: > > Also, if you have Ubuntu, can you simply apt-get install mpich? > On this system, apt-get installs GCC 4.8. My goal is to support users > of OpenCoarrays, which requires at least GCC 5.1.0 and preferably GCC > 6.1.0. Is there a Debian dpkg file that I could use to install MPICH? > > Yes, try 'apt-get install mpich'. > > I think he's saying "apt-get install mpich" brings in gcc-4.8 as a > dependency. > > Perhaps "apt-get source mpich" or maybe with the "-b" flag for > bulid-dependencies, then re-building the debian package will get you > what you need? > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > > -- > Jeff Hammond > jeff.science(a)gmail.com > http://jeffhammond.github.io/ > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Errors building MPICH on Windows 10 Ubuntu subsystem
by Jeff Hammond 11 Oct '16

11 Oct '16

Because OpenCoarrays calls MPI from C, the possible Fortran ABI variation across major versions of GCC should not be an issue. Damian should be fine to apt-get install mpich and then use the resulting C library. I imagine that cafc='mpicc -cc=gfortran-6' would work, but this is just a guess. Intel recently approved Windows 10. If I can get the VM for this, I'll try to debug this. Jeff On Tue, Oct 11, 2016 at 10:57 AM, Kenneth Raffenetti <raffenet(a)mcs.anl.gov> wrote: > mpicc and friends are wrappers around the regular gcc/g++/gfortran > compilers. If you have the version you want listed first in your PATH, > things will probably work as you want. You can test by running 'mpicc > -show' or 'mpicc -version' and check the underlying compiler. > > Ken > > > On 10/11/2016 12:22 PM, Rob Latham wrote: > >> >> >> On 10/11/2016 10:05 AM, Kenneth Raffenetti wrote: >> >>> On 10/11/2016 09:45 AM, Damian Rouson wrote: >>> >>>> > Also, if you have Ubuntu, can you simply apt-get install mpich? >>>>> >>>> On this system, apt-get installs GCC 4.8. My goal is to support users >>>> of OpenCoarrays, which requires at least GCC 5.1.0 and preferably GCC >>>> 6.1.0. Is there a Debian dpkg file that I could use to install MPICH? >>>> >>> >>> Yes, try 'apt-get install mpich'. >>> >> >> I think he's saying "apt-get install mpich" brings in gcc-4.8 as a >> dependency. >> >> Perhaps "apt-get source mpich" or maybe with the "-b" flag for >> bulid-dependencies, then re-building the debian package will get you >> what you need? >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > -- Jeff Hammond jeff.science(a)gmail.com http://jeffhammond.github.io/ _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Errors building MPICH on Windows 10 Ubuntu subsystem
by Kenneth Raffenetti 11 Oct '16

11 Oct '16

mpicc and friends are wrappers around the regular gcc/g++/gfortran compilers. If you have the version you want listed first in your PATH, things will probably work as you want. You can test by running 'mpicc -show' or 'mpicc -version' and check the underlying compiler. Ken On 10/11/2016 12:22 PM, Rob Latham wrote: > > > On 10/11/2016 10:05 AM, Kenneth Raffenetti wrote: >> On 10/11/2016 09:45 AM, Damian Rouson wrote: >>>> > Also, if you have Ubuntu, can you simply apt-get install mpich? >>> On this system, apt-get installs GCC 4.8. My goal is to support users >>> of OpenCoarrays, which requires at least GCC 5.1.0 and preferably GCC >>> 6.1.0. Is there a Debian dpkg file that I could use to install MPICH? >> >> Yes, try 'apt-get install mpich'. > > I think he's saying "apt-get install mpich" brings in gcc-4.8 as a > dependency. > > Perhaps "apt-get source mpich" or maybe with the "-b" flag for > bulid-dependencies, then re-building the debian package will get you > what you need? > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Errors building MPICH on Windows 10 Ubuntu subsystem
by Rob Latham 11 Oct '16

11 Oct '16

On 10/11/2016 10:05 AM, Kenneth Raffenetti wrote: > On 10/11/2016 09:45 AM, Damian Rouson wrote: >>> > Also, if you have Ubuntu, can you simply apt-get install mpich? >> On this system, apt-get installs GCC 4.8. My goal is to support users >> of OpenCoarrays, which requires at least GCC 5.1.0 and preferably GCC >> 6.1.0. Is there a Debian dpkg file that I could use to install MPICH? > > Yes, try 'apt-get install mpich'. I think he's saying "apt-get install mpich" brings in gcc-4.8 as a dependency. Perhaps "apt-get source mpich" or maybe with the "-b" flag for bulid-dependencies, then re-building the debian package will get you what you need? _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Errors building MPICH on Windows 10 Ubuntu subsystem
by Kenneth Raffenetti 11 Oct '16

11 Oct '16

On 10/11/2016 09:45 AM, Damian Rouson wrote: >> > Also, if you have Ubuntu, can you simply apt-get install mpich? > On this system, apt-get installs GCC 4.8. My goal is to support users of OpenCoarrays, which requires at least GCC 5.1.0 and preferably GCC 6.1.0. Is there a Debian dpkg file that I could use to install MPICH? Yes, try 'apt-get install mpich'. _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Errors building MPICH on Windows 10 Ubuntu subsystem
by Damian Rouson 11 Oct '16

11 Oct '16

> On Oct 11, 2016, at 7:31 AM, Balaji, Pavan <balaji(a)anl.gov> wrote: > > >> On Oct 11, 2016, at 2:05 PM, Damian Rouson <damian(a)sourceryinstitute.org> wrote: >>> On Oct 10, 2016, at 5:10 PM, Balaji, Pavan <balaji(a)anl.gov> wrote: >>> >>> >>> Can you try building with --disable-maintainer-mode? >> >> Yes, I tried building with “—disable-maintainer-mode” after reading the link stackoverlow link that I forwarded. It also recommended disabling maintainer mode. > > Are you still having the problem even with that configure option? Yes. > Did you try deleting and reinstalling from scratch? Yes, several times. > > Also, if you have Ubuntu, can you simply apt-get install mpich? On this system, apt-get installs GCC 4.8. My goal is to support users of OpenCoarrays, which requires at least GCC 5.1.0 and preferably GCC 6.1.0. Is there a Debian dpkg file that I could use to install MPICH? Strangely, I can also report that building OpenMPI from source leads to the same error message. By contrast, I am able to build GCC 6.1.0 and CMake 3.4.0 from source with no problems so not all builds fail. Damian _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Errors building MPICH on Windows 10 Ubuntu subsystem
by Balaji, Pavan 11 Oct '16

11 Oct '16

> On Oct 11, 2016, at 2:05 PM, Damian Rouson <damian(a)sourceryinstitute.org> wrote: >> On Oct 10, 2016, at 5:10 PM, Balaji, Pavan <balaji(a)anl.gov> wrote: >> >> >> Can you try building with --disable-maintainer-mode? > > Yes, I tried building with “—disable-maintainer-mode” after reading the link stackoverlow link that I forwarded. It also recommended disabling maintainer mode. Are you still having the problem even with that configure option? Did you try deleting and reinstalling from scratch? Also, if you have Ubuntu, can you simply apt-get install mpich? -- Pavan _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Errors building MPICH on Windows 10 Ubuntu subsystem
by Damian Rouson 11 Oct '16

11 Oct '16

> On Oct 10, 2016, at 5:10 PM, Balaji, Pavan <balaji(a)anl.gov> wrote: > > > Can you try building with --disable-maintainer-mode? Yes, I tried building with “—disable-maintainer-mode” after reading the link stackoverlow link that I forwarded. It also recommended disabling maintainer mode. Damian _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Errors building MPICH on Windows 10 Ubuntu subsystem
by Balaji, Pavan 10 Oct '16

10 Oct '16

Can you try building with --disable-maintainer-mode? mpich folks: we should try to disable maintainer mode by default for released tarballs. -- Pavan > On Oct 11, 2016, at 1:33 AM, Damian Rouson <damian(a)sourceryinstitute.org> wrote: > > All, > > In attempting to build MPICH 3.1.4 or 3.2 in the Windows 10 Subsystem for Linux, which provides a full Ubuntu bash shell, I receive the following error message after configuring: > > mpich-3.2/confdb/missing: line 81: aclocal-1.15: command not found > WARNING: 'aclocal-1.15' is missing on your system. > You should only need it if you modified 'acinclude.m4' or > 'configure.ac' or m4 files included by 'configure.ac'. > The 'aclocal' program is part of the GNU Automake package: > <http://www.gnu.org/software/automake> > It also requires GNU Autoconf, GNU m4 and Perl in order to run: > <http://www.gnu.org/software/autoconf> > <http://www.gnu.org/software/m4/> > <http://www.perl.org/> > make: *** [/home/rouson/Desktop-shortcut/opencoarrays/prerequisites/downloads/mpich-3.2/aclocal.m4] Error 127 > > Prior to configuring, I installed aclocal installed via “sudo apt-get install automake,” which provided aclocal-1.14. I attempted unsuccessfully to build aclocal-1.15, but the discussion at the following URL suggests that the problem might relate to time stamps on file MPICH tar ball: > > http://stackoverflow.com/questions/18769770/user-of-autotools-generated-tar… > > I tried several of the steps suggested at the above link, but each leads to the following error message during the make step: > > $ make > ( cd ./src/binding/fortran/mpif_h && ./buildiface ) > Replacing mpif.h.in > ( cd ./src/binding/fortran/use_mpi && ./buildiface ) > Replacing mpi_base.f90.in > Replacing mpi_constants.f90.in > Replacing mpi_t1.f90 > ( cd . && rm -f .err unusederr.txt ; rm -rf .tmp ) > ( cd . && \ > ./maint/extracterrmsgs -careful=unusederr.txt \ > -skip=src/util/multichannel/mpi.c \ > `cat maint/errmsgdirs` > .tmp 2>.err ) > ( cd . && if test -s .err ; then rm -f .tmp ; cat .err ; exit 1 ; fi ) > Warning: attempt to redefine **fail. Duplicate ignored. > make: *** [src/mpi/errhan/defmsg.h] Error 1 > > Can anyone advise me about how to resolve this problem? Information on the Windows 10 Ubuntu distribution is here: > > http://www.howtogeek.com/249966/how-to-install-and-use-the-linux-bash-shell… > > My goa is to support users of OpenCoarrays (https://github.com/sourceryinstitute/opencoarrays) which uses MPICH to build and execute coarray Fortran codes with the GNU Fortran compiler (gfortran). > > Best Regards, > ________________________________ > Damian Rouson, Ph.D., P.E. > President, Sourcery Institute > http://www.sourceryinstitute.org > +1-510-600-2992 (mobile) > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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