March 2011 - cgma-dev - mailman3.cels.anl.gov

Re: [cgma-dev] r4616 - in cgm/trunk: . m4
by Jason Kraftcheck 21 Mar '11

21 Mar '11

On 03/21/2011 12:23 PM, Iulian Grindeanu wrote: > Hi Jason, > Indeed, something is really wrong with my builds. I just cannot understand what. > >From the configure log it looks like you C++ compiler you specified (CXX=/homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx) doesn't work. - jason >> >> >> I do not see these errors. And the inability to find standard headers >> like >> 'fstream' and 'limits.'h is a) indicative of something being quite >> wrong and >> b) most likely the reason that Standard_Version.hxx appears unusable. >> >> Have you tried regenerating the autotools stuff (autoreconf -fi)?. Is >> the >> detected C++ compiler what you expect it to be? > > I did try autoreconf -fi > > I am using mpich2 from /homes/fathom/3rdparty folder. > > Where should I look? Something changed over the weekend :( it was fine last week. > > Thanks, > Iulian -- "A foolish consistency is the hobgoblin of little minds" - Ralph Waldo Emerson

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Re: [cgma-dev] r4616 - in cgm/trunk: . m4
by Iulian Grindeanu 21 Mar '11

21 Mar '11

Hi Jason, Indeed, something is really wrong with my builds. I just cannot understand what. > > > I do not see these errors. And the inability to find standard headers > like > 'fstream' and 'limits.'h is a) indicative of something being quite > wrong and > b) most likely the reason that Standard_Version.hxx appears unusable. > > Have you tried regenerating the autotools stuff (autoreconf -fi)?. Is > the > detected C++ compiler what you expect it to be? I did try autoreconf -fi I am using mpich2 from /homes/fathom/3rdparty folder. Where should I look? Something changed over the weekend :( it was fine last week. Thanks, Iulian

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Re: [cgma-dev] r4616 - in cgm/trunk: . m4
by Jason Kraftcheck 21 Mar '11

21 Mar '11

On 03/21/2011 12:04 PM, Iulian Grindeanu wrote: > I got some config errors, in CGM with occ; > Is anybody else getting those? > The file Standard_Version.hxx seems to be in the right place. > I do not see these errors. And the inability to find standard headers like 'fstream' and 'limits.'h is a) indicative of something being quite wrong and b) most likely the reason that Standard_Version.hxx appears unusable. Have you tried regenerating the autotools stuff (autoreconf -fi)?. Is the detected C++ compiler what you expect it to be? - jason > Iulian > > checking for fstream... no > checking fstream.h usability... no > checking fstream.h presence... no > checking for fstream.h... no > checking limits.h usability... no > checking limits.h presence... yes > configure: WARNING: limits.h: present but cannot be compiled > configure: WARNING: limits.h: check for missing prerequisite headers? > configure: WARNING: limits.h: see the Autoconf documentation > configure: WARNING: limits.h: section "Present But Cannot Be Compiled" > configure: WARNING: limits.h: proceeding with the compiler's result > checking for limits.h... no > checking Standard_Version.hxx usability... no > checking Standard_Version.hxx presence... yes > configure: WARNING: Standard_Version.hxx: present but cannot be compiled > configure: WARNING: Standard_Version.hxx: check for missing prerequisite headers? > configure: WARNING: Standard_Version.hxx: see the Autoconf documentation > configure: WARNING: Standard_Version.hxx: section "Present But Cannot Be Compiled" > configure: WARNING: Standard_Version.hxx: proceeding with the compiler's result > checking for Standard_Version.hxx... no > configure: error: OpenCascade config error:Standard_Version.hxx not found > > > > ----- Original Message ----- >> Author: kraftche >> Date: 2011-03-21 11:50:35 -0500 (Mon, 21 Mar 2011) >> New Revision: 4616 >> >> Modified: >> cgm/trunk/configure.ac >> cgm/trunk/m4/compiler.m4 >> Log: >> o Sync m4/compiler.m4 with MOAB version >> o Add --disable-fortran flag to force iGeom.h w/out Fortran name >> mangling >> >> >> Modified: cgm/trunk/configure.ac >> =================================================================== >> --- cgm/trunk/configure.ac 2011-03-20 09:18:34 UTC (rev 4615) >> +++ cgm/trunk/configure.ac 2011-03-21 16:50:35 UTC (rev 4616) >> @@ -10,8 +10,12 @@ >> [AM_INIT_AUTOMAKE([foreign -Wall])]) >> AC_DISABLE_SHARED >> >> +AC_ARG_ENABLE([fortran],[AC_HELP_STRING([--disable-fortran], >> + [No Fortran name mangling in ITAPS C headers])], >> + [ENABLE_FORTRAN=$enableval],[ENABLE_FORTRAN=yes]) >> + >> EXTRA_GNU_FLAGS="-Wall -pipe -pedantic" >> -FATHOM_CHECK_COMPILERS >> +FATHOM_CHECK_COMPILERS([yes],[yes],[$ENABLE_FORTRAN]) >> AC_PROG_LIBTOOL >> LIBS="-lm" >> AC_PROG_SED >> @@ -21,14 +25,14 @@ >> ################################################################################ >> # Fortran Stuff for ITAPS C bindings >> ################################################################################ >> -if test "x" != "x$FC"; then >> +if test "xyes" = "x$ENABLE_FORTRAN" && test "x" != "x$FC"; then >> AC_FC_WRAPPERS >> fi >> >> ################################################################################ >> # Create libtool script >> ################################################################################ >> -# We need the libtool script both for the calls to the >> ITAPS_LIBTOOL_VAR >> +# We need the libtool script both for the calls to the >> FATHOM_LIBTOOL_VAR >> # macro and for us in testing for ACIS libraries. If we're using a >> newer >> # version of libtool, the script normally isn't generated until >> AC_OUTPUT >> # at the end of the configure script. Ask that it be created now >> instead. >> @@ -38,8 +42,8 @@ >> ################################################################################ >> # Extract libtool config >> ################################################################################ >> -ITAPS_LIBTOOL_VAR( [CXX], [compiler_lib_search_path], >> [CGM_CXX_LINKFLAGS]) >> -ITAPS_LIBTOOL_VAR( [CXX], [postdeps], [CGM_CXX_LIBS]) >> +FATHOM_LIBTOOL_VAR( [CXX], [compiler_lib_search_path], >> [CGM_CXX_LINKFLAGS]) >> +FATHOM_LIBTOOL_VAR( [CXX], [postdeps], [CGM_CXX_LIBS]) >> AC_SUBST(CGM_CXX_LINKFLAGS) >> AC_SUBST(CGM_CXX_LIBS) >> >> >> Modified: cgm/trunk/m4/compiler.m4 >> =================================================================== >> --- cgm/trunk/m4/compiler.m4 2011-03-20 09:18:34 UTC (rev 4615) >> +++ cgm/trunk/m4/compiler.m4 2011-03-21 16:50:35 UTC (rev 4616) -- "A foolish consistency is the hobgoblin of little minds" - Ralph Waldo Emerson

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Re: [cgma-dev] r4616 - in cgm/trunk: . m4
by Iulian Grindeanu 21 Mar '11

21 Mar '11

I got some config errors, in CGM with occ; Is anybody else getting those? The file Standard_Version.hxx seems to be in the right place. Iulian checking for fstream... no checking fstream.h usability... no checking fstream.h presence... no checking for fstream.h... no checking limits.h usability... no checking limits.h presence... yes configure: WARNING: limits.h: present but cannot be compiled configure: WARNING: limits.h: check for missing prerequisite headers? configure: WARNING: limits.h: see the Autoconf documentation configure: WARNING: limits.h: section "Present But Cannot Be Compiled" configure: WARNING: limits.h: proceeding with the compiler's result checking for limits.h... no checking Standard_Version.hxx usability... no checking Standard_Version.hxx presence... yes configure: WARNING: Standard_Version.hxx: present but cannot be compiled configure: WARNING: Standard_Version.hxx: check for missing prerequisite headers? configure: WARNING: Standard_Version.hxx: see the Autoconf documentation configure: WARNING: Standard_Version.hxx: section "Present But Cannot Be Compiled" configure: WARNING: Standard_Version.hxx: proceeding with the compiler's result checking for Standard_Version.hxx... no configure: error: OpenCascade config error:Standard_Version.hxx not found ----- Original Message ----- > Author: kraftche > Date: 2011-03-21 11:50:35 -0500 (Mon, 21 Mar 2011) > New Revision: 4616 > > Modified: > cgm/trunk/configure.ac > cgm/trunk/m4/compiler.m4 > Log: > o Sync m4/compiler.m4 with MOAB version > o Add --disable-fortran flag to force iGeom.h w/out Fortran name > mangling > > > Modified: cgm/trunk/configure.ac > =================================================================== > --- cgm/trunk/configure.ac 2011-03-20 09:18:34 UTC (rev 4615) > +++ cgm/trunk/configure.ac 2011-03-21 16:50:35 UTC (rev 4616) > @@ -10,8 +10,12 @@ > [AM_INIT_AUTOMAKE([foreign -Wall])]) > AC_DISABLE_SHARED > > +AC_ARG_ENABLE([fortran],[AC_HELP_STRING([--disable-fortran], > + [No Fortran name mangling in ITAPS C headers])], > + [ENABLE_FORTRAN=$enableval],[ENABLE_FORTRAN=yes]) > + > EXTRA_GNU_FLAGS="-Wall -pipe -pedantic" > -FATHOM_CHECK_COMPILERS > +FATHOM_CHECK_COMPILERS([yes],[yes],[$ENABLE_FORTRAN]) > AC_PROG_LIBTOOL > LIBS="-lm" > AC_PROG_SED > @@ -21,14 +25,14 @@ > ################################################################################ > # Fortran Stuff for ITAPS C bindings > ################################################################################ > -if test "x" != "x$FC"; then > +if test "xyes" = "x$ENABLE_FORTRAN" && test "x" != "x$FC"; then > AC_FC_WRAPPERS > fi > > ################################################################################ > # Create libtool script > ################################################################################ > -# We need the libtool script both for the calls to the > ITAPS_LIBTOOL_VAR > +# We need the libtool script both for the calls to the > FATHOM_LIBTOOL_VAR > # macro and for us in testing for ACIS libraries. If we're using a > newer > # version of libtool, the script normally isn't generated until > AC_OUTPUT > # at the end of the configure script. Ask that it be created now > instead. > @@ -38,8 +42,8 @@ > ################################################################################ > # Extract libtool config > ################################################################################ > -ITAPS_LIBTOOL_VAR( [CXX], [compiler_lib_search_path], > [CGM_CXX_LINKFLAGS]) > -ITAPS_LIBTOOL_VAR( [CXX], [postdeps], [CGM_CXX_LIBS]) > +FATHOM_LIBTOOL_VAR( [CXX], [compiler_lib_search_path], > [CGM_CXX_LINKFLAGS]) > +FATHOM_LIBTOOL_VAR( [CXX], [postdeps], [CGM_CXX_LIBS]) > AC_SUBST(CGM_CXX_LINKFLAGS) > AC_SUBST(CGM_CXX_LIBS) > > > Modified: cgm/trunk/m4/compiler.m4 > =================================================================== > --- cgm/trunk/m4/compiler.m4 2011-03-20 09:18:34 UTC (rev 4615) > +++ cgm/trunk/m4/compiler.m4 2011-03-21 16:50:35 UTC (rev 4616)

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r4616 - in cgm/trunk: . m4
by kraftche＠cae.wisc.edu 21 Mar '11

21 Mar '11

Author: kraftche Date: 2011-03-21 11:50:35 -0500 (Mon, 21 Mar 2011) New Revision: 4616 Modified: cgm/trunk/configure.ac cgm/trunk/m4/compiler.m4 Log: o Sync m4/compiler.m4 with MOAB version o Add --disable-fortran flag to force iGeom.h w/out Fortran name mangling Modified: cgm/trunk/configure.ac =================================================================== --- cgm/trunk/configure.ac 2011-03-20 09:18:34 UTC (rev 4615) +++ cgm/trunk/configure.ac 2011-03-21 16:50:35 UTC (rev 4616) @@ -10,8 +10,12 @@ [AM_INIT_AUTOMAKE([foreign -Wall])]) AC_DISABLE_SHARED +AC_ARG_ENABLE([fortran],[AC_HELP_STRING([--disable-fortran], + [No Fortran name mangling in ITAPS C headers])], + [ENABLE_FORTRAN=$enableval],[ENABLE_FORTRAN=yes]) + EXTRA_GNU_FLAGS="-Wall -pipe -pedantic" -FATHOM_CHECK_COMPILERS +FATHOM_CHECK_COMPILERS([yes],[yes],[$ENABLE_FORTRAN]) AC_PROG_LIBTOOL LIBS="-lm" AC_PROG_SED @@ -21,14 +25,14 @@ ################################################################################ # Fortran Stuff for ITAPS C bindings ################################################################################ -if test "x" != "x$FC"; then +if test "xyes" = "x$ENABLE_FORTRAN" && test "x" != "x$FC"; then AC_FC_WRAPPERS fi ################################################################################ # Create libtool script ################################################################################ -# We need the libtool script both for the calls to the ITAPS_LIBTOOL_VAR +# We need the libtool script both for the calls to the FATHOM_LIBTOOL_VAR # macro and for us in testing for ACIS libraries. If we're using a newer # version of libtool, the script normally isn't generated until AC_OUTPUT # at the end of the configure script. Ask that it be created now instead. @@ -38,8 +42,8 @@ ################################################################################ # Extract libtool config ################################################################################ -ITAPS_LIBTOOL_VAR( [CXX], [compiler_lib_search_path], [CGM_CXX_LINKFLAGS]) -ITAPS_LIBTOOL_VAR( [CXX], [postdeps], [CGM_CXX_LIBS]) +FATHOM_LIBTOOL_VAR( [CXX], [compiler_lib_search_path], [CGM_CXX_LINKFLAGS]) +FATHOM_LIBTOOL_VAR( [CXX], [postdeps], [CGM_CXX_LIBS]) AC_SUBST(CGM_CXX_LINKFLAGS) AC_SUBST(CGM_CXX_LIBS) Modified: cgm/trunk/m4/compiler.m4 =================================================================== --- cgm/trunk/m4/compiler.m4 2011-03-20 09:18:34 UTC (rev 4615) +++ cgm/trunk/m4/compiler.m4 2011-03-21 16:50:35 UTC (rev 4616)

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How do I turn off Fortran name mangling?
by Jed Brown 16 Mar '11

16 Mar '11

I just rebuilt CGM and Lasso with arguments ../configure --prefix=/home/jed/usr --enable-debug --enable-shared --with-mpi --with-occ=/opt/opencascade CC=mpicc CXX=mpicxx FC= F77= and ../configure --prefix=/home/jed/usr --enable-shared --enable-debug --with-igeom=/home/jed/usr --with-imesh=/home/jed/usr CC=mpicc CXX=mpicxx FC= F77= respectively. In the past, this has turned off Fortran name mangling. For MOAB, I have to give --disable-fortran for this effect, but that does not show up in the help messages for CGM or Lasso. So I compiled and installed CGM like this, the symbols in the library are mangled which I don't really like (not as nice in the debugger) but no big deal except that Lasso (which is also producing mangled symbols) is still referencing non-mangled iGeom symbols which of course causes link errors.

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buildbot failure in Fathom on cgm-shared
by cgma-dev＠mcs.anl.gov 13 Mar '11

13 Mar '11

The Fathomatic has detected a failed build of cgm-shared on Fathom. Full details are available at: http://gnep.mcs.anl.gov:8010/builders/cgm-shared/builds/403 Buildbot URL: http://gnep.mcs.anl.gov:8010/ Buildslave for this Build: gnep Build Reason: The Nightly scheduler named 'cgm-shared-nightly' triggered this build Build Source Stamp: None Blamelist: BUILD FAILED: failed install LOG EXCERPT: make[1]: Entering directory `/disks/itaps-buildslave/cgm-shared/build' Making install in compat make[2]: Entering directory `/disks/itaps-buildslave/cgm-shared/build/compat' make[3]: Entering directory `/disks/itaps-buildslave/cgm-shared/build/compat' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. ... Making install in util make[2]: Entering directory `/disks/itaps-buildslave/cgm-shared/build/util' make[3]: Entering directory `/disks/itaps-buildslave/cgm-shared/build/util' make[3]: Nothing to be done for `install-exec-am'. test -z "/disk/itaps-buildslave/packages/cgm-shared/include" || /bin/mkdir -p "/disk/itaps-buildslave/packages/cgm-shared/include" /bin/mkdir: cannot create directory `/disk': Permission denied sincerely, -The Fathomatic

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buildbot failure in Fathom on cgm-shared
by cgma-dev＠mcs.anl.gov 12 Mar '11

12 Mar '11

The Fathomatic has detected a failed build of cgm-shared on Fathom. Full details are available at: http://gnep.mcs.anl.gov:8010/builders/cgm-shared/builds/402 Buildbot URL: http://gnep.mcs.anl.gov:8010/ Buildslave for this Build: gnep Build Reason: The Nightly scheduler named 'cgm-shared-nightly' triggered this build Build Source Stamp: None Blamelist: BUILD FAILED: failed install LOG EXCERPT: make[1]: Entering directory `/disks/itaps-buildslave/cgm-shared/build' Making install in compat make[2]: Entering directory `/disks/itaps-buildslave/cgm-shared/build/compat' make[3]: Entering directory `/disks/itaps-buildslave/cgm-shared/build/compat' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. ... Making install in util make[2]: Entering directory `/disks/itaps-buildslave/cgm-shared/build/util' make[3]: Entering directory `/disks/itaps-buildslave/cgm-shared/build/util' make[3]: Nothing to be done for `install-exec-am'. test -z "/disk/itaps-buildslave/packages/cgm-shared/include" || /bin/mkdir -p "/disk/itaps-buildslave/packages/cgm-shared/include" /bin/mkdir: cannot create directory `/disk': Permission denied sincerely, -The Fathomatic

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Re: [cgma-dev] r4579 - cgm/branches/merge-cubit12/itaps
by Iulian Grindeanu 11 Mar '11

11 Mar '11

Hello, It seems that the previous version (4578) on this branch failed the testgeom test. Iulian ----- Original Message ----- > Author: iulian > Date: 2011-03-10 19:41:34 -0600 (Thu, 10 Mar 2011) > New Revision: 4579 > > Modified: > cgm/branches/merge-cubit12/itaps/iBase.h > cgm/branches/merge-cubit12/itaps/iGeom.h > cgm/branches/merge-cubit12/itaps/iGeom_CGMA.cc > cgm/branches/merge-cubit12/itaps/testgeom.cc > Log: > changes due to tags interface > testgeom does not pass yet, but meshkit tests pass > Still investigating > > > Modified: cgm/branches/merge-cubit12/itaps/iBase.h > =================================================================== > --- cgm/branches/merge-cubit12/itaps/iBase.h 2011-03-11 00:44:48 UTC > (rev 4578) > +++ cgm/branches/merge-cubit12/itaps/iBase.h 2011-03-11 01:41:34 UTC > (rev 4579) > @@ -7,6 +7,11 @@ > { > #endif > > +#define IBASE_MINENUM(enumName) enumName ## _MIN > +#define IBASE_MAXENUM(enumName) enumName ## _MAX > +#define IBASE_NUMENUM(enumName) ((int)IBASE_MAXENUM(enumName) - > (int)IBASE_MINENUM(enumName) + 1) > +#define IBASE_INCENUM(enumName,I) (I = (enum enumName)((int)I+1)) > + > /*========================================================== > * TYPEDEF'S > *========================================================== > @@ -15,19 +20,22 @@ > typedef struct iBase_EntityHandle_Private* iBase_EntityHandle; > typedef struct iBase_EntitySetHandle_Private* iBase_EntitySetHandle; > typedef struct iBase_TagHandle_Private* iBase_TagHandle; > - typedef void* iBase_EntityIterator; > - typedef void* iBase_EntityArrIterator; > + typedef struct iBase_EntityIterator_Private* iBase_EntityIterator; > + typedef struct iBase_EntityArrIterator_Private* > iBase_EntityArrIterator; > > + > /*========================================================== > * ENTITYTYPE ENUMERATION > *========================================================== > */ > enum iBase_EntityType { > - iBase_VERTEX = 0, > + iBase_EntityType_MIN = 0, > + iBase_VERTEX = iBase_EntityType_MIN, > iBase_EDGE, > iBase_FACE, > iBase_REGION, > - iBase_ALL_TYPES > + iBase_ALL_TYPES, > + iBase_EntityType_MAX = iBase_ALL_TYPES > }; > > /*========================================================== > @@ -35,13 +43,16 @@ > *========================================================== > */ > enum iBase_AdjacencyCost { > - iBase_UNAVAILABLE = 0, /**< Adjacency information not supported */ > - iBase_ALL_ORDER_1, /**< No more than local mesh traversal required > */ > - iBase_ALL_ORDER_LOGN, /**< Global tree search */ > - iBase_ALL_ORDER_N, /**< Global exhaustive search */

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r4579 - cgm/branches/merge-cubit12/itaps
by iulian＠mcs.anl.gov 10 Mar '11

10 Mar '11

Author: iulian Date: 2011-03-10 19:41:34 -0600 (Thu, 10 Mar 2011) New Revision: 4579 Modified: cgm/branches/merge-cubit12/itaps/iBase.h cgm/branches/merge-cubit12/itaps/iGeom.h cgm/branches/merge-cubit12/itaps/iGeom_CGMA.cc cgm/branches/merge-cubit12/itaps/testgeom.cc Log: changes due to tags interface testgeom does not pass yet, but meshkit tests pass Still investigating Modified: cgm/branches/merge-cubit12/itaps/iBase.h =================================================================== --- cgm/branches/merge-cubit12/itaps/iBase.h 2011-03-11 00:44:48 UTC (rev 4578) +++ cgm/branches/merge-cubit12/itaps/iBase.h 2011-03-11 01:41:34 UTC (rev 4579) @@ -7,6 +7,11 @@ { #endif +#define IBASE_MINENUM(enumName) enumName ## _MIN +#define IBASE_MAXENUM(enumName) enumName ## _MAX +#define IBASE_NUMENUM(enumName) ((int)IBASE_MAXENUM(enumName) - (int)IBASE_MINENUM(enumName) + 1) +#define IBASE_INCENUM(enumName,I) (I = (enum enumName)((int)I+1)) + /*========================================================== * TYPEDEF'S *========================================================== @@ -15,19 +20,22 @@ typedef struct iBase_EntityHandle_Private* iBase_EntityHandle; typedef struct iBase_EntitySetHandle_Private* iBase_EntitySetHandle; typedef struct iBase_TagHandle_Private* iBase_TagHandle; - typedef void* iBase_EntityIterator; - typedef void* iBase_EntityArrIterator; + typedef struct iBase_EntityIterator_Private* iBase_EntityIterator; + typedef struct iBase_EntityArrIterator_Private* iBase_EntityArrIterator; + /*========================================================== * ENTITYTYPE ENUMERATION *========================================================== */ enum iBase_EntityType { - iBase_VERTEX = 0, + iBase_EntityType_MIN = 0, + iBase_VERTEX = iBase_EntityType_MIN, iBase_EDGE, iBase_FACE, iBase_REGION, - iBase_ALL_TYPES + iBase_ALL_TYPES, + iBase_EntityType_MAX = iBase_ALL_TYPES }; /*========================================================== @@ -35,13 +43,16 @@ *========================================================== */ enum iBase_AdjacencyCost { - iBase_UNAVAILABLE = 0, /**< Adjacency information not supported */ - iBase_ALL_ORDER_1, /**< No more than local mesh traversal required */ - iBase_ALL_ORDER_LOGN, /**< Global tree search */ - iBase_ALL_ORDER_N, /**< Global exhaustive search */

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