June 2014 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] couldn't build mpich-3.1.1 on Solaris 10 with gcc-4.9.0
by Balaji, Pavan 24 Jun '14

24 Jun '14

Before we go digging down this path, did you try simplifying your configure options? ../mpich-3.1.1/configure --prefix=/usr/local/mpich-3.1.1_64_gcc \ --libdir=/usr/local/mpich-3.1.1_64_gcc/lib64 \ --includedir=/usr/local/mpich-3.1.1_64_gcc/include64 \ CC="gcc" CXX="g++" F77="gfortran" FC="gfortran" \ CFLAGS="-m64" CXXFLAGS="-m64" FFLAGS="-m64" FCFLAGS="-m64" \ LDFLAGS="-m64 -L/usr/lib/sparcv9 -Wl,-rpath /usr/lib/sparcv9" \ --enable-f77 --enable-fc --enable-cxx --enable-romio \ --enable-debuginfo --enable-smpcoll \ --enable-threads=runtime --with-thread-package=posix \ --enable-shared \ |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc Why is -m64 needed? Are you trying to use a 32-bit compiler on a 64-bit machine? Why do you need the rpath settings? — Pavan On Jun 20, 2014, at 8:37 AM, Siegmar Gross <Siegmar.Gross(a)informatik.hs-fulda.de> wrote: > Hi, > > today I tried to install mpich-3.1.1 on my platforms (Solaris 10 > sparc, Solaris 10 x86_64, and openSUSE Linux 12.1) with gcc-4.9.0 > and Sun C 5.12. Unfortunately I couldn't build it with gcc-4.9.0 on > my Solaris platforms (everything else succeeded). > > tyr mpich-3.1.1 110 grep Error mpich-3.1.1-SunOS.x86_64.64_cc/log.make.* > tyr mpich-3.1.1 111 grep Error mpich-3.1.1-SunOS.x86_64.64_gcc/log.make.* > make[2]: *** [lib/libmpicxx.la] Error 1 > make[1]: *** [all-recursive] Error 1 > make: *** [all] Error 2 > tyr mpich-3.1.1 112 > tyr mpich-3.1.1 112 grep Error mpich-3.1.1-SunOS.sparc.64_cc/log.make.* > tyr mpich-3.1.1 113 grep Error mpich-3.1.1-SunOS.sparc.64_gcc/log.make.* > make[2]: *** [lib/libmpicxx.la] Error 1 > make[1]: *** [all-recursive] Error 1 > make: *** [all] Error 2 > tyr mpich-3.1.1 114 > > tyr mpich-3.1.1 123 tail mpich-3.1.1-SunOS.x86_64.64_gcc/log.make.* > CXX src/binding/cxx/initcxx.lo > CXXLD lib/libmpicxx.la > ld: fatal: file libmpicxx.so.12: open failed: No such file or directory > ld: fatal: file processing errors. No output written to > lib/.libs/libmpicxx.so.12.0.1 > collect2: error: ld returned 1 exit status > make[2]: *** [lib/libmpicxx.la] Error 1 > make[2]: Leaving directory > `/export2/src/mpich-3.1.1/mpich-3.1.1-SunOS.x86_64.64_gcc' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory > `/export2/src/mpich-3.1.1/mpich-3.1.1-SunOS.x86_64.64_gcc' > make: *** [all] Error 2 > tyr mpich-3.1.1 124 > > > I used the following command to configure the system. "ld" reports > an error for "libxml2.so" without "/usr/lib/sparcv9" in LDFLAGS > (wrong ELF class). The command is similar for Solaris 10 x86_64. > Solaris uses LD_LIBRARY_PATH_64 to find 64-bit libraries and > LD_LIBRARY_PATH for 32-bit ones. Perhaps that's the reason why I > had to add the directories to LDFLAGS. > > ../mpich-3.1.1/configure --prefix=/usr/local/mpich-3.1.1_64_gcc \ > --libdir=/usr/local/mpich-3.1.1_64_gcc/lib64 \ > --includedir=/usr/local/mpich-3.1.1_64_gcc/include64 \ > CC="gcc" CXX="g++" F77="gfortran" FC="gfortran" \ > CFLAGS="-m64" CXXFLAGS="-m64" FFLAGS="-m64" FCFLAGS="-m64" \ > LDFLAGS="-m64 -L/usr/lib/sparcv9 -Wl,-rpath /usr/lib/sparcv9" \ > --enable-f77 --enable-fc --enable-cxx --enable-romio \ > --enable-debuginfo --enable-smpcoll \ > --enable-threads=runtime --with-thread-package=posix \ > --enable-shared \ > |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc > > > I would be grateful if somebody can provide a solution for my > problem. I have attached some config.log files. Do you need > anything else? > > > Kind regards > > Siegmar > <mpich-3.1.1-SunOS.sparc.64_gcc.tar.gz>_______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

1 0

Re: [mpich-discuss] MPI MPICH change default directory.
by Lu, Huiwei 23 Jun '14

23 Jun '14

Hi Daniil, Due to lack of developer resources, currently MPICH no longer supports the Windows platform. Please refer to our FAQ for more information: http://wiki.mpich.org/mpich/index.php/Frequently_Asked_Questions#Q:_Why_can… We recommend you use Microsoft MPI, which can be found here: http://msdn.microsoft.com/en-us/library/bb524831(v=vs.85).aspx If the problem is with MS-MPI, you should try the MS-MPI forum: http://social.microsoft.com/Forums/en-US/home?forum=windowshpcmpi or askmpi(a)microsoft.com Thanks. — Huiwei On Jun 23, 2014, at 6:45 PM, Daniil Andrienko <daniilandrienko(a)gmail.com> wrote: > Hello all, > > I am running MPI MPICH under Windows. My Fortran code is reading and writing files from different folders of the projects directory, however MPICH is always looking for files at the /bin directory. How can I change the default directory? > > Many thanks, > Daniil > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

1 0

MPI MPICH change default directory.
by Daniil Andrienko 23 Jun '14

23 Jun '14

Hello all, I am running MPI MPICH under Windows. My Fortran code is reading and writing files from different folders of the projects directory, however MPICH is always looking for files at the /bin directory. How can I change the default directory? Many thanks, Daniil

1 0

Re: [mpich-discuss] mpich2-1.5 and automake 1.13
by Ricardo Santos 23 Jun '14

23 Jun '14

That mail was sent Incomplete. I’ve sent an more complete email and i resolved the problem with some help from another mailing list user. On 23 Jun 2014 15:54, Antonio J. Peña <apenya(a)mcs.anl.gov> wrote: > > Hi Ricardo, > > Please include the configure and make logs when reporting this kind of > problems. "without success" doesn't help us to figure out your issue. > > Best, > Antonio > > > On 06/23/2014 04:51 AM, Ricardo Santos wrote: > > Hello, > I'm trying to install mpich2-1.5 in a RHEL7 without success. > > The complete list of step is: > unset CPPFLAGS > unset F90 > unset F90FLAGS > export F77=/opt/pgi/linux86-64/10.4/bin/pgf90 > export FC=/opt/pgi/linux86-64/10.4/bin/pgf90 > ./configure --prefix=/opt/mpich2-1.5 --enable-sharedlibs=gcc > --enable-smpcoll --enable-romio --enable-fc --enable-cxx --enable-pipecoll > --enable-mpe --enable-shared --with-pm=mpd |& tee c.txt make > > > > *Ricardo Santos *[rcsantos(a)ua.pt] > > *sTIC *– serviços de Tecnologias de Informação e Comunicação [*http://www.ua.pt/stic > <http://www.ua.pt/stic>*] > > *aSIC *– área Segurança, Informática e Comunicações > > Universidade de Aveiro > > Campus Universitário Santiago 3810-193 AVEIRO > > *Suporte Técnico: *stic-helpdesk(a)ua.pt / Telf: +351 234 370099 / Ext: > 22299 > > *Geral/Administrativo:* stic(a)ua.pt / Telf: +351 234 372469 / FAX: +351 > 234 370214 / Ext: 22250 > > > *Aviso de Confidencialidade/ Confidentiality Notice *Esta mensagem, e os > ficheiros eventualmente anexos, é confidencial e reservada apenas ao > conhecimento da(s) pessoa(s) nela indicada(s) como destinatária(s). Se não > é o seu destinatário, ou se lhe foi enviada por erro, não faça qualquer > uso do respectivo conteúdo e proceda à sua destruição, notificando o > remetente. This message, and the existing attached files, is confidential > and intended exclusively for the individual(s) named as addressees. If you > are not the intended recipient, or if it was sent to you by error, you are > kindly requested not to make any use of its contents and to proceed to the > destruction of the message, thereby notifying the sender. > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe:https://lists.mpich.org/mailman/listinfo/discuss > > > > -- > Antonio J. Peña > Postdoctoral Appointee > Mathematics and Computer Science Division > Argonne National Laboratory > 9700 South Cass Avenue, Bldg. 240, Of. 3148 > Argonne, IL 60439-4847apenya(a)mcs.anl.govwww.mcs.anl.gov/~apenya > >

1 0

Re: [mpich-discuss] mpich2-1.5 and automake 1.13
by "Antonio J. Peña" 23 Jun '14

23 Jun '14

Hi Ricardo, Please include the configure and make logs when reporting this kind of problems. "without success" doesn't help us to figure out your issue. Best, Antonio On 06/23/2014 04:51 AM, Ricardo Santos wrote: > Hello, > I'm trying to install mpich2-1.5 in a RHEL7 without success. > > The complete list of step is: > unset CPPFLAGS > unset F90 > unset F90FLAGS > export F77=/opt/pgi/linux86-64/10.4/bin/pgf90 > export FC=/opt/pgi/linux86-64/10.4/bin/pgf90 > ./configure --prefix=/opt/mpich2-1.5 --enable-sharedlibs=gcc > --enable-smpcoll --enable-romio --enable-fc --enable-cxx > --enable-pipecoll --enable-mpe --enable-shared --with-pm=mpd |& tee > c.txt make > > > > *Ricardo Santos *[rcsantos(a)ua.pt <mailto:[email protected]>] > > *sTIC *-- serviï¿½os de Tecnologias de Informaï¿½ï¿½o e Comunicaï¿½ï¿½o > [_http://www.ua.pt/stic_] > > *aSIC *-- ï¿½rea Seguranï¿½a, Informï¿½tica e Comunicaï¿½ï¿½es > > Universidade de Aveiro > > Campus Universitï¿½rio Santiago 3810-193 AVEIRO > > *Suporte Tï¿½cnico: *stic-helpdesk(a)ua.pt <mailto:[email protected]>/ > Telf: +351 234 370099 / Ext: 22299 > > *Geral/Administrativo:*[email protected] <mailto:[email protected]>/ Telf: +351 234 > 372469 / FAX: +351 234 370214 / Ext: 22250 > > *Aviso de Confidencialidade/ Confidentiality Notice > *Esta mensagem, e os ficheiros eventualmente anexos, ï¿½ confidencial e > reservada apenas ao conhecimento da(s) pessoa(s) nela indicada(s) como > destinatï¿½ria(s). Se nï¿½o ï¿½ o seu destinatï¿½rio, ou se lhe foi enviada > por erro, nï¿½o faï¿½a qualquer uso do respectivo conteï¿½do e proceda ï¿½ sua > destruiï¿½ï¿½o, notificando o remetente. This message, and the existing > attached files, is confidential and intended exclusively for the > individual(s) named as addressees. If you are not the intended > recipient, or if it was sent to you by error, you are kindly requested > not to make any use of its contents and to proceed to the destruction > of the message, thereby notifying the sender. > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss -- Antonio J. Peï¿½a Postdoctoral Appointee Mathematics and Computer Science Division Argonne National Laboratory 9700 South Cass Avenue, Bldg. 240, Of. 3148 Argonne, IL 60439-4847 apenya(a)mcs.anl.gov www.mcs.anl.gov/~apenya

1 0

Re: [mpich-discuss] mpich2-1.5 and automake 1.13 (ignore previous email)
by Ricardo Santos 23 Jun '14

23 Jun '14

Hey. That was enough to put me in the right direction. Thanks, On 23 Jun 2014 11:37, "Gilles Gouaillardet" <gilles.gouaillardet(a)iferc.org> wrote: > Ricardo, > > did you get mpich from a tarball or from svn ? > > if you got it from a tarball, autotools should *not* be required to > configure/make > > Cheers, > > Gilles > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

1 0

Re: [mpich-discuss] mpich2-1.5 and automake 1.13 (ignore previous email)
by Gilles Gouaillardet 23 Jun '14

23 Jun '14

Ricardo, did you get mpich from a tarball or from svn ? if you got it from a tarball, autotools should *not* be required to configure/make Cheers, Gilles

1 0

mpich2-1.5 and automake 1.13 (ignore previous email)
by Ricardo Santos 23 Jun '14

23 Jun '14

Hello, I'm trying to install mpich2-1.5 in a RHEL7 without success. Running "make": *parallel-tests: error: required file 'confdb/test-driver' not found * *parallel-tests: 'automake --add-missing' can install 'test-driver'* *make[2]: *** [Makefile.in] Error 1* *make[1]: *** [all-recursive] Error 1* *make: *** [all] Error 2* The complete list of step is: unset CPPFLAGS unset F90 unset F90FLAGS export F77=/opt/pgi/linux86-64/10.4/bin/pgf90 export FC=/opt/pgi/linux86-64/10.4/bin/pgf90 ./configure --prefix=/opt/mpich2-1.5 --enable-sharedlibs=gcc --enable-smpcoll --enable-romio --enable-fc --enable-cxx --enable-pipecoll --enable-mpe --enable-shared --with-pm=mpd |& tee c.txt make The same source, with the exact same options, works perfectly in CentOS 6.5. Meanwhile i did some checking and probably the problem is due to the Red HAT automake version 1.13 that makes default a new parallel "test driver". Any ideas on how to resolve this? Regards, *Ricardo Santos *[rcsantos(a)ua.pt] *sTIC *– serviços de Tecnologias de Informação e Comunicação [*http://www.ua.pt/stic <http://www.ua.pt/stic>*] *aSIC *– área Segurança, Informática e Comunicações Universidade de Aveiro Campus Universitário Santiago 3810-193 AVEIRO *Suporte Técnico: *stic-helpdesk(a)ua.pt / Telf: +351 234 370099 / Ext: 22299 *Geral/Administrativo:* stic(a)ua.pt / Telf: +351 234 372469 / FAX: +351 234 370214 / Ext: 22250 *Aviso de Confidencialidade/ Confidentiality Notice*Esta mensagem, e os ficheiros eventualmente anexos, é confidencial e reservada apenas ao conhecimento da(s) pessoa(s) nela indicada(s) como destinatária(s). Se não é o seu destinatário, ou se lhe foi enviada por erro, não faça qualquer uso do respectivo conteúdo e proceda à sua destruição, notificando o remetente. This message, and the existing attached files, is confidential and intended exclusively for the individual(s) named as addressees. If you are not the intended recipient, or if it was sent to you by error, you are kindly requested not to make any use of its contents and to proceed to the destruction of the message, thereby notifying the sender.

1 0

mpich2-1.5 and automake 1.13
by Ricardo Santos 23 Jun '14

23 Jun '14

Hello, I'm trying to install mpich2-1.5 in a RHEL7 without success. The complete list of step is: unset CPPFLAGS unset F90 unset F90FLAGS export F77=/opt/pgi/linux86-64/10.4/bin/pgf90 export FC=/opt/pgi/linux86-64/10.4/bin/pgf90 ./configure --prefix=/opt/mpich2-1.5 --enable-sharedlibs=gcc --enable-smpcoll --enable-romio --enable-fc --enable-cxx --enable-pipecoll --enable-mpe --enable-shared --with-pm=mpd |& tee c.txt make *Ricardo Santos *[rcsantos(a)ua.pt] *sTIC *– serviços de Tecnologias de Informação e Comunicação [*http://www.ua.pt/stic <http://www.ua.pt/stic>*] *aSIC *– área Segurança, Informática e Comunicações Universidade de Aveiro Campus Universitário Santiago 3810-193 AVEIRO *Suporte Técnico: *stic-helpdesk(a)ua.pt / Telf: +351 234 370099 / Ext: 22299 *Geral/Administrativo:* stic(a)ua.pt / Telf: +351 234 372469 / FAX: +351 234 370214 / Ext: 22250 *Aviso de Confidencialidade/ Confidentiality Notice*Esta mensagem, e os ficheiros eventualmente anexos, é confidencial e reservada apenas ao conhecimento da(s) pessoa(s) nela indicada(s) como destinatária(s). Se não é o seu destinatário, ou se lhe foi enviada por erro, não faça qualquer uso do respectivo conteúdo e proceda à sua destruição, notificando o remetente. This message, and the existing attached files, is confidential and intended exclusively for the individual(s) named as addressees. If you are not the intended recipient, or if it was sent to you by error, you are kindly requested not to make any use of its contents and to proceed to the destruction of the message, thereby notifying the sender.

1 0

couldn't build mpich-3.1.1 on Solaris 10 with gcc-4.9.0
by Siegmar Gross 20 Jun '14

20 Jun '14

Hi, today I tried to install mpich-3.1.1 on my platforms (Solaris 10 sparc, Solaris 10 x86_64, and openSUSE Linux 12.1) with gcc-4.9.0 and Sun C 5.12. Unfortunately I couldn't build it with gcc-4.9.0 on my Solaris platforms (everything else succeeded). tyr mpich-3.1.1 110 grep Error mpich-3.1.1-SunOS.x86_64.64_cc/log.make.* tyr mpich-3.1.1 111 grep Error mpich-3.1.1-SunOS.x86_64.64_gcc/log.make.* make[2]: *** [lib/libmpicxx.la] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all] Error 2 tyr mpich-3.1.1 112 tyr mpich-3.1.1 112 grep Error mpich-3.1.1-SunOS.sparc.64_cc/log.make.* tyr mpich-3.1.1 113 grep Error mpich-3.1.1-SunOS.sparc.64_gcc/log.make.* make[2]: *** [lib/libmpicxx.la] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all] Error 2 tyr mpich-3.1.1 114 tyr mpich-3.1.1 123 tail mpich-3.1.1-SunOS.x86_64.64_gcc/log.make.* CXX src/binding/cxx/initcxx.lo CXXLD lib/libmpicxx.la ld: fatal: file libmpicxx.so.12: open failed: No such file or directory ld: fatal: file processing errors. No output written to lib/.libs/libmpicxx.so.12.0.1 collect2: error: ld returned 1 exit status make[2]: *** [lib/libmpicxx.la] Error 1 make[2]: Leaving directory `/export2/src/mpich-3.1.1/mpich-3.1.1-SunOS.x86_64.64_gcc' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/export2/src/mpich-3.1.1/mpich-3.1.1-SunOS.x86_64.64_gcc' make: *** [all] Error 2 tyr mpich-3.1.1 124 I used the following command to configure the system. "ld" reports an error for "libxml2.so" without "/usr/lib/sparcv9" in LDFLAGS (wrong ELF class). The command is similar for Solaris 10 x86_64. Solaris uses LD_LIBRARY_PATH_64 to find 64-bit libraries and LD_LIBRARY_PATH for 32-bit ones. Perhaps that's the reason why I had to add the directories to LDFLAGS. ../mpich-3.1.1/configure --prefix=/usr/local/mpich-3.1.1_64_gcc \ --libdir=/usr/local/mpich-3.1.1_64_gcc/lib64 \ --includedir=/usr/local/mpich-3.1.1_64_gcc/include64 \ CC="gcc" CXX="g++" F77="gfortran" FC="gfortran" \ CFLAGS="-m64" CXXFLAGS="-m64" FFLAGS="-m64" FCFLAGS="-m64" \ LDFLAGS="-m64 -L/usr/lib/sparcv9 -Wl,-rpath /usr/lib/sparcv9" \ --enable-f77 --enable-fc --enable-cxx --enable-romio \ --enable-debuginfo --enable-smpcoll \ --enable-threads=runtime --with-thread-package=posix \ --enable-shared \ |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc I would be grateful if somebody can provide a solution for my problem. I have attached some config.log files. Do you need anything else? Kind regards Siegmar

1 0