June 2014 - discuss - mailman3.cels.anl.gov

failures of make testing
by Xaver Gerster 12 Jun '14

12 Jun '14

Hi, on a fresh install of version 3.1.1 I get these two failures in 'make testing'. Any clue if they are relevant, and if so how to fix them? Thanks, Xaver not ok 56 - ./coll/bcast2 10 --- Directory: ./coll File: bcast2 Num-procs: 10 Date: "Thu Jun 12 08:12:18 2014" ... ## Test output (expected 'No Errors'): ## [mpiexec@xxx] APPLICATION TIMED OUT ## [proxy:0:0@xxx] HYD_pmcd_pmip_control_cmd_cb (pm/pmiserv/pmip_cb.c:885): assert (!closed) failed ## [proxy:0:0@xxx] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status ## [proxy:0:0@xxx] main (pm/pmiserv/pmip.c:206): demux engine error waiting for event ## [mpiexec@xxx] HYDT_bscu_wait_for_completion (tools/bootstrap/utils/bscu_wait.c:76): one of the processes terminated badly; aborting ## [mpiexec@xxx] HYDT_bsci_wait_for_completion (tools/bootstrap/src/bsci_wait.c:23): launcher returned error waiting for completion ## [mpiexec@xxx] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:189): launcher returned error waiting for completion ## [mpiexec@xxx] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion not ok 290 - ./pt2pt/sendflood 8 --- Directory: ./pt2pt File: sendflood Num-procs: 8 Date: "Thu Jun 12 08:40:10 2014" ... ## Test output (expected 'No Errors'): ## [mpiexec@xxx] APPLICATION TIMED OUT ## [proxy:0:0@xxx] HYD_pmcd_pmip_control_cmd_cb (pm/pmiserv/pmip_cb.c:885): assert (!closed) failed ## [proxy:0:0@xxx] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status ## [proxy:0:0@xxx] main (pm/pmiserv/pmip.c:206): demux engine error waiting for event ## [mpiexec@xxx] HYDT_bscu_wait_for_completion (tools/bootstrap/utils/bscu_wait.c:76): one of the processes terminated badly; aborting ## [mpiexec@xxx] HYDT_bsci_wait_for_completion (tools/bootstrap/src/bsci_wait.c:23): launcher returned error waiting for completion ## [mpiexec@xxx] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:189): launcher returned error waiting for completion ## [mpiexec@xxx] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion

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Re: [mpich-discuss] mpirun not running in batch mode.
by Gus Correa 11 Jun '14

11 Jun '14

On 06/11/2014 05:24 AM, Reuti wrote: > Hi, > > Am 11.06.2014 um 10:55 schrieb Francisco Pastor: > >> Hi mpich users >> >> I know I am using an old version of mpich but this one has been working for a long time so when building a new cluster we decided to use the same one. The point is that we have installed RAMS meteorological model with mpich2-1.0.5 and it runs fine when running from console but not with cron or at. > > Is it running at root then or by a normal user? The path may be different when starting with these methodes too. > > As it's a new cluster: did you look into the option to install a queuing system? > > -- Reuti > +1 Using cron or at to launch batch jobs is a shoot on one's own foot. A job queueing system is a clean solution, and not very hard to setup. SGE, Torque and slurm are open source/free job queuing systems that have good mailing list / community support. Gus Correa > >> If the script that runs the model is scheduled with cron >> it just starts processes on the main node but not in the rest of the cluster nodes. >> >> While waiting for your help I will try to upgrade to a newer mpich version. >> >> I can't find the reason why this is happening, probably I made some mistake. Can you help me? Any idea will be welcome and tried. >> >> Following I attach some information that could be useful to understand my problem. >> >> meteo@ventus:~$ mpich2version >> Version: 1.0.5 >> Device: ch3:sock >> Configure Options: >> CC: gcc >> CXX: c++ >> F77: f95 >> F90: f95 >> >> >> Processes in the main node when run with `at` >> >> meteo@ventus:~/RAMS/RUN$ ps -ef | grep rams >> meteo 20324 18460 0 09:32 ? 00:00:00 python2 /usr/local/mpich2-1.0.5p4/bin/mpirun -envall -n 40 ./rams60 -f RAMSIN.operatiu >> meteo 20331 20326 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20332 20327 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20333 20328 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20334 20329 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20335 20330 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20336 20325 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20343 18113 0 09:33 pts/4 00:00:00 grep --color=auto rams >> >> log of mpirun >> >> meteo@ventus:~/RAMS/RUN$ cat log_rams_operatiu-INITIAL-20140611-0000 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> >> Mpich options to compile RAMS model >> >> MPI_PATH=/usr/local/mpich2-1.0.5p4 >> PAR_INCS=-I$(MPI_PATH)/src/include >> PAR_LIBS=-L$(MPI_PATH)/lib/ -lmpich >> PAR_DEFS=-DRAMS_MPI >> >> Thank you very much for your help. >> >> -- >> ----------- >> Dr. Francisco Pastor >> Meteorology department, Instituto Universitario CEAM-UMH >> http://www.ceam.es >> ----------- >> Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ >> Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es >> Researcher ID: http://www.researcherid.com/rid/B-8331-2008 >> Cosis profile: http://www.cosis.net/profile/francisco.pastor >> ----------- >> mail: paco(a)ceam.es >> skype: paco.pastor.guzman >> ----------- >> Parque Tecnologico, C/ Charles R. Darwin, 14 >> 46980 PATERNA (Valencia), Spain >> Tlf. 96 131 82 27 - Fax. 96 131 81 90 >> >> >> --------------------------------------------------------------------- >> Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen informaciï¿½n reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvï¿½o a su direcciï¿½n electrï¿½nica; no deberï¿½ copiar el mensaje ni divulgar su contenido a ninguna persona. >> >> Su direcciï¿½n de correo electrï¿½nico junto a sus datos personales forman parte de un fichero titularidad de la Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgï¿½nica 15/1999, usted puede ejercitar sus derechos de acceso, rectificaciï¿½n, cancelaciï¿½n y, en su caso, oposiciï¿½n enviando una solicitud por escrito, acompaï¿½ada de una fotocopia de su DNI dirigida a: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). >> >> This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. >> >> Your email address and personal data are included in a file belonging to the Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). >> >> >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

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Re: [mpich-discuss] mpirun not running in batch mode.
by Francisco Pastor 11 Jun '14

11 Jun '14

The relevant part of the script (RAMS_operatiu.bash) is $ruta_mpi/mpirun -n 40 ./rams60 -f /home/meteo/RAMS/RUN/RAMSIN.operatiu > $log-INITIAL-$hoy-$horasim cat $log-INITIAL-$hoy-$horasim >> $log Full script following (removed comments to shorten) #!/bin/bash #----------------------------------------------------------------------------- # RAMS_operatiu.bash #----------------------------------------------------------------------------- clear # Exportacion de las rutas ruta_rams=/home/meteo/RAMS ruta_scripts=$ruta_rams/SCRIPTS ruta_run=$ruta_rams/RUN ruta_dp=$ruta_run/data ruta_geodata=$ruta_run/geodata ruta_hist=$ruta_run/HISTORY ruta_log=$ruta_rams/LOGS/RAMS ruta_flags=$ruta_rams/FLAGS ruta_files=$ruta_rams/FILES ruta_mpi=/usr/local/mpich2-1.0.5p4/bin script="RAMS_operatiu.bash" hoy=`date -u +%Y%m%d` log="log_rams_operatiu" #------------------------------------------------------------------------------- # Funcition #------------------------------------------------------------------------------- Comprueba_MPD() { $ruta_mpi/mpdtrace > log.mpd wc -l log.mpd > check.mpd check1=`awk '{ print $1 }' check.mpd` if [ $check1 -eq 5 ]; then echo "Salida de mpdtrace correcta, hosts=$check1" else echo "Salida de mpdtrace incorrecta, hosts=$check1" echo "Se lanza de nuevo mpdboot" $ruta_mpi/mpdboot -n 5 & echo "Esperar 10 segons" sleep 10 echo "Passat 10 segons" echo " " $ruta_mpi/mpdtrace fi } #------------------------------------------------------------------------------- # INICIO DEL SCRIPT #------------------------------------------------------------------------------- cd $ruta_run source .profile # Horas y fechas fecha_cabecera=`date '+%A %d de %B de %Y -- %H:%M:%S'` Hora_Exec=`date '+%H'` if [ $Hora_Exec -ge 5 ] && [ $Hora_Exec -lt 17 ] then Hora_Sim=00 horasim=0000 else Hora_Sim=12 horasim=1200 fi # Pone la cabecera del archivo de registro. echo "***************************************************************" > $log echo "INICIO DEL SCRIPT $script " >> $log echo "---------------------------------------------------------------" >> $log echo "Hora de inicio: $fecha_cabecera" >> $log echo "***************************************************************" >> $log echo " " >> $log echo "---------------------------------------------------------------" >> $log echo "Inicio de la ejecuciÃ³n del modelo RAMS" >> $log echo "---------------------------------------------------------------" >> $log dia=`date -u +%d` mes=`date -u +%m` ano=`date -u +%Y` # Paso 1: MKSFC echo " " >> $log echo "-------------------" >> $log echo "Inicio paso MAKESFC" >> $log echo "-------------------" >> $log cp $ruta_files/RAMSIN.operatiu.base ./RAMSIN.base sed "s/TIPUS/MAKESFC/g" RAMSIN.base > R1 sed "s/DIA/$dia/g" R1 > R2 sed "s/MES/$mes/g" R2 > R3 sed "s/ANIO/$ano/g" R3 > R4 sed "s/HORA/$horasim/g" R4 > RAMSIN.operatiu ./rams60 -f RAMSIN.operatiu > $log-MAKESFC-$hoy-$horasim ultima_linea=`tail -n 1 $log-MAKESFC-$hoy-$horasim` echo $ultima_linea > check.makesfc check1=`awk '{ print $1 }' check.makesfc` check2=`awk '{ print $2 }' check.makesfc` check3=`awk '{ print $3 }' check.makesfc` if [ $check1 = "MAKESFC" ] && [ $check2 = "run" ] && [ $check3 = "complete" ]; then echo " " >> $log echo "----------------------------------------------------" >> $log echo "El paso MAKESFC de simulaciÃ³n ha concluido con Ã©xito" >> $log echo "----------------------------------------------------" >> $log echo " " >> $log else echo " " >> $log echo "----------------------------------------------------" >> $log echo "El paso MAKESFC de simulaciÃ³n ha concluido con error" >> $log echo "----------------------------------------------------" >> $log echo " " >> $log fi rm check.makesfc # Paso 2: MAKEVFILE echo " " >> $log echo "---------------------" >> $log echo "Inicio paso MAKEVFILE" >> $log echo "---------------------" >> $log cp $ruta_files/RAMSIN.operatiu.base ./RAMSIN.base sed "s/TIPUS/MAKEVFILE/g" RAMSIN.base > R1 sed "s/DIA/$dia/g" R1 > R2 sed "s/MES/$mes/g" R2 > R3 sed "s/ANIO/$ano/g" R3 > R4 sed "s/HORA/$horasim/g" R4 > RAMSIN.operatiu ./rams60 -f RAMSIN.operatiu > $log-MAKEVFILE-$hoy-$horasim ultima_linea=`tail -n 1 $log-MAKEVFILE-$hoy-$horasim` echo $ultima_linea > check.makevfile check1=`awk '{ print $1 }' check.makevfile` check2=`awk '{ print $2 }' check.makevfile` if [ $check1 = "ISAN" ] && [ $check2 = "complete" ]; then echo " " >> $log echo "------------------------------------------------------" >> $log echo "El paso MAKEVFILE de simulaciÃ³n ha concluido con Ã©xito" >> $log echo "------------------------------------------------------" >> $log echo " " >> $log else echo " " >> $log echo "------------------------------------------------------" >> $log echo "El paso MAKEVFILE de simulaciÃ³n ha concluido con Ã©xito" >> $log echo "------------------------------------------------------" >> $log echo " " >> $log fi rm check.makevfile # Paso 3: INITIAL/HISTORY if [ $modo -eq 1 ]; then tipus="INITIAL" else tipus="HISTORY" fi echo " " >> $log echo "---------------------" >> $log echo "Inicio paso $tipus" >> $log echo "---------------------" >> $log cp $ruta_files/RAMSIN.operatiu.base ./RAMSIN.base sed "s/TIPUS/$tipus/g" RAMSIN.base > R1 sed "s/DIA/$dia/g" R1 > R2 sed "s/MES/$mes/g" R2 > R3 sed "s/ANIO/$ano/g" R3 > R4 sed "s/HORA/$horasim/g" R4 > RAMSIN.operatiu rm R1 R2 R3 R4 $ruta_mpi/mpirun -n 40 ./rams60 -f /home/meteo/RAMS/RUN/RAMSIN.operatiu > $log-INITIAL-$hoy-$horasim cat $log-INITIAL-$hoy-$horasim >> $log # Final del script fecha_final=`date '+%A %d de %B de %Y -- %H:%M:%S'` echo " " >> $log echo "---------------------------------------------------------------" >> $log echo "Hora de final: $fecha_final" >> $log echo "---------------------------------------------------------------" >> $log El 11/06/2014 16:29, Lu, Huiwei escribiï¿½: > Which is the script that runs mpi job? Could you give us the content of that script? > > -- ----------- Dr. Francisco Pastor Meteorology department, Instituto Universitario CEAM-UMH http://www.ceam.es ----------- Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es Researcher ID: http://www.researcherid.com/rid/B-8331-2008 Cosis profile: http://www.cosis.net/profile/francisco.pastor ----------- mail: paco(a)ceam.es skype: paco.pastor.guzman ----------- Parque Tecnologico, C/ Charles R. Darwin, 14 46980 PATERNA (Valencia), Spain Tlf. 96 131 82 27 - Fax. 96 131 81 90 --------------------------------------------------------------------- Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen informaciï¿½n reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvï¿½o a su direcciï¿½n electrï¿½nica; no deberï¿½ copiar el mensaje ni divulgar su contenido a ninguna persona. Su direcciï¿½n de correo electrï¿½nico junto a sus datos personales forman parte de un fichero titularidad de la Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgï¿½nica 15/1999, usted puede ejercitar sus derechos de acceso, rectificaciï¿½n, cancelaciï¿½n y, en su caso, oposiciï¿½n enviando una solicitud por escrito, acompaï¿½ada de una fotocopia de su DNI dirigida a: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. Your email address and personal data are included in a file belonging to the Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia).

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Re: [mpich-discuss] mpirun not running in batch mode.
by Lu, Huiwei 11 Jun '14

11 Jun '14

You need to create a machinefile to run mpi program on multiple machines. For example, if the machinefile is: host1 host2 host3 host4 Using 'mpirun -n 4 -f machinefile ./rams60 …’ will create 4 rams60 processes on the above 4 hosts (host1, host2, host3 and host4) separately. See http://www.mpich.org/static/downloads/3.1.1/mpich-3.1.1-userguide.pdf section 5. — Huiwei On Jun 11, 2014, at 10:05 AM, Francisco Pastor <paco(a)ceam.es> wrote: > The relevant part of the script (RAMS_operatiu.bash) is > > $ruta_mpi/mpirun -n 40 ./rams60 -f /home/meteo/RAMS/RUN/RAMSIN.operatiu > $log-INITIAL-$hoy-$horasim > cat $log-INITIAL-$hoy-$horasim >> $log

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Re: [mpich-discuss] mpirun not running in batch mode.
by Lu, Huiwei 11 Jun '14

11 Jun '14

Which is the script that runs mpi job? Could you give us the content of that script? — Huiwei On Jun 11, 2014, at 9:27 AM, Francisco Pastor <paco(a)ceam.es> wrote: > Output of crontab -l > > # Edit this file to introduce tasks to be run by cron. > > MAILTO="paco(a)ceam.es" > > # m h dom mon dow command > > #------------------------------------------------------------------ > # Procesos relativos a la descarga de GFS > #------------------------------------------------------------------ > 00 6,18 * * * /home/meteo/RAMS/SCRIPTS/GFS_descarga_diaria.bash > 30 8,20 * * * /home/meteo/RAMS/SCRIPTS/mail_logs.bash > 15 6,18 * * * /home/meteo/RAMS/SCRIPTS/GFS_2_RAMS.bash > 00 2 * * * /home/meteo/RAMS/SCRIPTS/limpia_logs.bash > 00 2 * * * /home/meteo/RAMS/SCRIPTS/limpia_dp.bash > 0,15,30,45 * * * * /home/meteo/RAMS/SCRIPTS/test-sistema-ventus.bash > 0,15,30,45 * * * * /home/meteo/scripts/control-temperatura.bash > 50 00,13 * * * /home/meteo/R/thalassa/RAMS-graficar-serie-temperatura-onades.bash > > # Prova d'execució de RAMS a les 7 i les 19 > > 00 7,19 * * * /home/meteo/RAMS/SCRIPTS/RAMS_operatiu.bash > > El 11/06/2014 15:49, Lu, Huiwei escribió: >> Could you give us the output of the following command: "crontab -l" ? >> >> — >> Huiwei >> >> On Jun 11, 2014, at 8:02 AM, Francisco Pastor <paco(a)ceam.es> wrote: >> >>> Hi >>> >>> This file contains some model configuration parameter. It lies in the same directory where model is being executed. Don't think the problem comes from this point. The running command is rams60 (owned by meteo), a symbolic link to rams-6.0-opt (owned by root) >>> >>> lrwxrwxrwx 1 meteo meteo 39 mar 12 11:57 rams60 -> /usr/local/rams60/build/60/rams-6.0-opt >>> >>> -rwxr-xr-x 1 root root 5009008 jun 11 11:34 /usr/local/rams60/build/60/rams-6.0-opt >>> >>> Thanks >>> >>> >>> El 11/06/2014 14:03, Lu, Huiwei escribió: >>>> Is the file RAMSIN.operatiu at the home directory? >>>> You may want to give cron script the complete path to that file. >>>> >>>> — >>>> Huiwei >>>> >>>> On Jun 11, 2014, at 3:55 AM, Francisco Pastor <paco(a)ceam.es> wrote: >>>> >>>>> meteo@ventus:~/RAMS/RUN$ ps -ef | grep rams >>>>> meteo 20324 18460 0 09:32 ? 00:00:00 python2 /usr/local/mpich2-1.0.5p4/bin/mpirun -envall -n 40 ./rams60 -f RAMSIN.operatiu >>>> _______________________________________________ >>>> discuss mailing list discuss(a)mpich.org >>>> To manage subscription options or unsubscribe: >>>> https://lists.mpich.org/mailman/listinfo/discuss >>>> >>>> >>> -- >>> ----------- >>> Dr. Francisco Pastor >>> Meteorology department, Instituto Universitario CEAM-UMH >>> http://www.ceam.es >>> ----------- >>> Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ >>> Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es >>> Researcher ID: http://www.researcherid.com/rid/B-8331-2008 >>> Cosis profile: http://www.cosis.net/profile/francisco.pastor >>> ----------- >>> mail: paco(a)ceam.es >>> skype: paco.pastor.guzman >>> ----------- >>> Parque Tecnologico, C/ Charles R. Darwin, 14 >>> 46980 PATERNA (Valencia), Spain >>> Tlf. 96 131 82 27 - Fax. 96 131 81 90 >>> >>> >>> --------------------------------------------------------------------- >>> Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen información reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvío a su dirección electrónica; no deberá copiar el mensaje ni divulgar su contenido a ninguna persona. >>> >>> Su dirección de correo electrónico junto a sus datos personales forman parte de un fichero titularidad de la Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgánica 15/1999, usted puede ejercitar sus derechos de acceso, rectificación, cancelación y, en su caso, oposición enviando una solicitud por escrito, acompañada de una fotocopia de su DNI dirigida a: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). >>> >>> This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. >>> >>> Your email address and personal data are included in a file belonging to the Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). >>> >>> >>> >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> >> > > -- > ----------- > Dr. Francisco Pastor > Meteorology department, Instituto Universitario CEAM-UMH > http://www.ceam.es > ----------- > Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ > Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es > Researcher ID: http://www.researcherid.com/rid/B-8331-2008 > Cosis profile: http://www.cosis.net/profile/francisco.pastor > ----------- > mail: paco(a)ceam.es > skype: paco.pastor.guzman > ----------- > Parque Tecnologico, C/ Charles R. Darwin, 14 > 46980 PATERNA (Valencia), Spain > Tlf. 96 131 82 27 - Fax. 96 131 81 90 > > > --------------------------------------------------------------------- > Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen información reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvío a su dirección electrónica; no deberá copiar el mensaje ni divulgar su contenido a ninguna persona. > > Su dirección de correo electrónico junto a sus datos personales forman parte de un fichero titularidad de la Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgánica 15/1999, usted puede ejercitar sus derechos de acceso, rectificación, cancelación y, en su caso, oposición enviando una solicitud por escrito, acompañada de una fotocopia de su DNI dirigida a: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). > > This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. > > Your email address and personal data are included in a file belonging to the Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] mpirun not running in batch mode.
by Francisco Pastor 11 Jun '14

11 Jun '14

Output of crontab -l # Edit this file to introduce tasks to be run by cron. MAILTO="paco(a)ceam.es" # m h dom mon dow command #------------------------------------------------------------------ # Procesos relativos a la descarga de GFS #------------------------------------------------------------------ 00 6,18 * * * /home/meteo/RAMS/SCRIPTS/GFS_descarga_diaria.bash 30 8,20 * * * /home/meteo/RAMS/SCRIPTS/mail_logs.bash 15 6,18 * * * /home/meteo/RAMS/SCRIPTS/GFS_2_RAMS.bash 00 2 * * * /home/meteo/RAMS/SCRIPTS/limpia_logs.bash 00 2 * * * /home/meteo/RAMS/SCRIPTS/limpia_dp.bash 0,15,30,45 * * * * /home/meteo/RAMS/SCRIPTS/test-sistema-ventus.bash 0,15,30,45 * * * * /home/meteo/scripts/control-temperatura.bash 50 00,13 * * * /home/meteo/R/thalassa/RAMS-graficar-serie-temperatura-onades.bash # Prova d'execuciï¿½ de RAMS a les 7 i les 19 00 7,19 * * * /home/meteo/RAMS/SCRIPTS/RAMS_operatiu.bash El 11/06/2014 15:49, Lu, Huiwei escribiï¿½: > Could you give us the output of the following command: "crontab -l" ? > > ï¿½ > Huiwei > > On Jun 11, 2014, at 8:02 AM, Francisco Pastor <paco(a)ceam.es> wrote: > >> Hi >> >> This file contains some model configuration parameter. It lies in the same directory where model is being executed. Don't think the problem comes from this point. The running command is rams60 (owned by meteo), a symbolic link to rams-6.0-opt (owned by root) >> >> lrwxrwxrwx 1 meteo meteo 39 mar 12 11:57 rams60 -> /usr/local/rams60/build/60/rams-6.0-opt >> >> -rwxr-xr-x 1 root root 5009008 jun 11 11:34 /usr/local/rams60/build/60/rams-6.0-opt >> >> Thanks >> >> >> El 11/06/2014 14:03, Lu, Huiwei escribiï¿½: >>> Is the file RAMSIN.operatiu at the home directory? >>> You may want to give cron script the complete path to that file. >>> >>> ï¿½ >>> Huiwei >>> >>> On Jun 11, 2014, at 3:55 AM, Francisco Pastor <paco(a)ceam.es> wrote: >>> >>>> meteo@ventus:~/RAMS/RUN$ ps -ef | grep rams >>>> meteo 20324 18460 0 09:32 ? 00:00:00 python2 /usr/local/mpich2-1.0.5p4/bin/mpirun -envall -n 40 ./rams60 -f RAMSIN.operatiu >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >>> >>> >> -- >> ----------- >> Dr. Francisco Pastor >> Meteorology department, Instituto Universitario CEAM-UMH >> http://www.ceam.es >> ----------- >> Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ >> Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es >> Researcher ID: http://www.researcherid.com/rid/B-8331-2008 >> Cosis profile: http://www.cosis.net/profile/francisco.pastor >> ----------- >> mail: paco(a)ceam.es >> skype: paco.pastor.guzman >> ----------- >> Parque Tecnologico, C/ Charles R. Darwin, 14 >> 46980 PATERNA (Valencia), Spain >> Tlf. 96 131 82 27 - Fax. 96 131 81 90 >> >> >> --------------------------------------------------------------------- >> Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen informaciï¿½n reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvï¿½o a su direcciï¿½n electrï¿½nica; no deberï¿½ copiar el mensaje ni divulgar su contenido a ninguna persona. >> >> Su direcciï¿½n de correo electrï¿½nico junto a sus datos personales forman parte de un fichero titularidad de la Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgï¿½nica 15/1999, usted puede ejercitar sus derechos de acceso, rectificaciï¿½n, cancelaciï¿½n y, en su caso, oposiciï¿½n enviando una solicitud por escrito, acompaï¿½ada de una fotocopia de su DNI dirigida a: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). >> >> This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. >> >> Your email address and personal data are included in a file belonging to the Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). >> >> >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > -- ----------- Dr. Francisco Pastor Meteorology department, Instituto Universitario CEAM-UMH http://www.ceam.es ----------- Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es Researcher ID: http://www.researcherid.com/rid/B-8331-2008 Cosis profile: http://www.cosis.net/profile/francisco.pastor ----------- mail: paco(a)ceam.es skype: paco.pastor.guzman ----------- Parque Tecnologico, C/ Charles R. Darwin, 14 46980 PATERNA (Valencia), Spain Tlf. 96 131 82 27 - Fax. 96 131 81 90 --------------------------------------------------------------------- Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen informaciï¿½n reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvï¿½o a su direcciï¿½n electrï¿½nica; no deberï¿½ copiar el mensaje ni divulgar su contenido a ninguna persona. Su direcciï¿½n de correo electrï¿½nico junto a sus datos personales forman parte de un fichero titularidad de la Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgï¿½nica 15/1999, usted puede ejercitar sus derechos de acceso, rectificaciï¿½n, cancelaciï¿½n y, en su caso, oposiciï¿½n enviando una solicitud por escrito, acompaï¿½ada de una fotocopia de su DNI dirigida a: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. Your email address and personal data are included in a file belonging to the Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia).

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Re: [mpich-discuss] mpirun not running in batch mode.
by Lu, Huiwei 11 Jun '14

11 Jun '14

Could you give us the output of the following command: "crontab -l" ? — Huiwei On Jun 11, 2014, at 8:02 AM, Francisco Pastor <paco(a)ceam.es> wrote: > Hi > > This file contains some model configuration parameter. It lies in the same directory where model is being executed. Don't think the problem comes from this point. The running command is rams60 (owned by meteo), a symbolic link to rams-6.0-opt (owned by root) > > lrwxrwxrwx 1 meteo meteo 39 mar 12 11:57 rams60 -> /usr/local/rams60/build/60/rams-6.0-opt > > -rwxr-xr-x 1 root root 5009008 jun 11 11:34 /usr/local/rams60/build/60/rams-6.0-opt > > Thanks > > > El 11/06/2014 14:03, Lu, Huiwei escribió: >> Is the file RAMSIN.operatiu at the home directory? >> You may want to give cron script the complete path to that file. >> >> — >> Huiwei >> >> On Jun 11, 2014, at 3:55 AM, Francisco Pastor <paco(a)ceam.es> wrote: >> >>> meteo@ventus:~/RAMS/RUN$ ps -ef | grep rams >>> meteo 20324 18460 0 09:32 ? 00:00:00 python2 /usr/local/mpich2-1.0.5p4/bin/mpirun -envall -n 40 ./rams60 -f RAMSIN.operatiu >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> >> > > -- > ----------- > Dr. Francisco Pastor > Meteorology department, Instituto Universitario CEAM-UMH > http://www.ceam.es > ----------- > Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ > Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es > Researcher ID: http://www.researcherid.com/rid/B-8331-2008 > Cosis profile: http://www.cosis.net/profile/francisco.pastor > ----------- > mail: paco(a)ceam.es > skype: paco.pastor.guzman > ----------- > Parque Tecnologico, C/ Charles R. Darwin, 14 > 46980 PATERNA (Valencia), Spain > Tlf. 96 131 82 27 - Fax. 96 131 81 90 > > > --------------------------------------------------------------------- > Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen información reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvío a su dirección electrónica; no deberá copiar el mensaje ni divulgar su contenido a ninguna persona. > > Su dirección de correo electrónico junto a sus datos personales forman parte de un fichero titularidad de la Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgánica 15/1999, usted puede ejercitar sus derechos de acceso, rectificación, cancelación y, en su caso, oposición enviando una solicitud por escrito, acompañada de una fotocopia de su DNI dirigida a: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). > > This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. > > Your email address and personal data are included in a file belonging to the Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundación de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterráneo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnológico.46980 PATERNA (Valencia). > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] mpirun not running in batch mode.
by Francisco Pastor 11 Jun '14

11 Jun '14

Hi This file contains some model configuration parameter. It lies in the same directory where model is being executed. Don't think the problem comes from this point. The running command is rams60 (owned by meteo), a symbolic link to rams-6.0-opt (owned by root) lrwxrwxrwx 1 meteo meteo 39 mar 12 11:57 rams60 -> /usr/local/rams60/build/60/rams-6.0-opt -rwxr-xr-x 1 root root 5009008 jun 11 11:34 /usr/local/rams60/build/60/rams-6.0-opt Thanks El 11/06/2014 14:03, Lu, Huiwei escribiï¿½: > Is the file RAMSIN.operatiu at the home directory? > You may want to give cron script the complete path to that file. > > ï¿½ > Huiwei > > On Jun 11, 2014, at 3:55 AM, Francisco Pastor <paco(a)ceam.es> wrote: > >> meteo@ventus:~/RAMS/RUN$ ps -ef | grep rams >> meteo 20324 18460 0 09:32 ? 00:00:00 python2 /usr/local/mpich2-1.0.5p4/bin/mpirun -envall -n 40 ./rams60 -f RAMSIN.operatiu > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > -- ----------- Dr. Francisco Pastor Meteorology department, Instituto Universitario CEAM-UMH http://www.ceam.es ----------- Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es Researcher ID: http://www.researcherid.com/rid/B-8331-2008 Cosis profile: http://www.cosis.net/profile/francisco.pastor ----------- mail: paco(a)ceam.es skype: paco.pastor.guzman ----------- Parque Tecnologico, C/ Charles R. Darwin, 14 46980 PATERNA (Valencia), Spain Tlf. 96 131 82 27 - Fax. 96 131 81 90 --------------------------------------------------------------------- Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen informaciï¿½n reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvï¿½o a su direcciï¿½n electrï¿½nica; no deberï¿½ copiar el mensaje ni divulgar su contenido a ninguna persona. Su direcciï¿½n de correo electrï¿½nico junto a sus datos personales forman parte de un fichero titularidad de la Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgï¿½nica 15/1999, usted puede ejercitar sus derechos de acceso, rectificaciï¿½n, cancelaciï¿½n y, en su caso, oposiciï¿½n enviando una solicitud por escrito, acompaï¿½ada de una fotocopia de su DNI dirigida a: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. Your email address and personal data are included in a file belonging to the Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia).

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Re: [mpich-discuss] mpirun not running in batch mode.
by Lu, Huiwei 11 Jun '14

11 Jun '14

Is the file RAMSIN.operatiu at the home directory? You may want to give cron script the complete path to that file. — Huiwei On Jun 11, 2014, at 3:55 AM, Francisco Pastor <paco(a)ceam.es> wrote: > meteo@ventus:~/RAMS/RUN$ ps -ef | grep rams > meteo 20324 18460 0 09:32 ? 00:00:00 python2 /usr/local/mpich2-1.0.5p4/bin/mpirun -envall -n 40 ./rams60 -f RAMSIN.operatiu

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Re: [mpich-discuss] mpirun not running in batch mode.
by Francisco Pastor 11 Jun '14

11 Jun '14

Hi Reuti and thanks In both cases, terminal or cron, I run the script as a normal user (meteo). The executable is a symbolic link to the actual rams60 owned by root (build with /sudo make/). Didn't mention we are on Ubuntu 12.04. lrwxrwxrwx 1 meteo meteo 39 mar 12 11:57 rams60 -> /usr/local/rams60/build/60/rams-6.0-opt -rwxr-xr-x 1 root root 5009008 jun 11 11:34 /usr/local/rams60/build/60/rams-6.0-opt Sorry but don't know about queuing system, I'm not an expert in system administration but a meteorologist working with computers. Thanks El 11/06/2014 11:24, Reuti escribiï¿½: > Hi, > > Am 11.06.2014 um 10:55 schrieb Francisco Pastor: > >> Hi mpich users >> >> I know I am using an old version of mpich but this one has been working for a long time so when building a new cluster we decided to use the same one. The point is that we have installed RAMS meteorological model with mpich2-1.0.5 and it runs fine when running from console but not with cron or at. > Is it running at root then or by a normal user? The path may be different when starting with these methodes too. > > As it's a new cluster: did you look into the option to install a queuing system? > > -- Reuti > > >> If the script that runs the model is scheduled with cron it just starts processes on the main node but not in the rest of the cluster nodes. >> >> While waiting for your help I will try to upgrade to a newer mpich version. >> >> I can't find the reason why this is happening, probably I made some mistake. Can you help me? Any idea will be welcome and tried. >> >> Following I attach some information that could be useful to understand my problem. >> >> meteo@ventus:~$ mpich2version >> Version: 1.0.5 >> Device: ch3:sock >> Configure Options: >> CC: gcc >> CXX: c++ >> F77: f95 >> F90: f95 >> >> >> Processes in the main node when run with `at` >> >> meteo@ventus:~/RAMS/RUN$ ps -ef | grep rams >> meteo 20324 18460 0 09:32 ? 00:00:00 python2 /usr/local/mpich2-1.0.5p4/bin/mpirun -envall -n 40 ./rams60 -f RAMSIN.operatiu >> meteo 20331 20326 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20332 20327 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20333 20328 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20334 20329 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20335 20330 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20336 20325 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu >> meteo 20343 18113 0 09:33 pts/4 00:00:00 grep --color=auto rams >> >> log of mpirun >> >> meteo@ventus:~/RAMS/RUN$ cat log_rams_operatiu-INITIAL-20140611-0000 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> in main 1024 >> numarg: 2 >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> par init numargs: 3 ./rams60 1024 0 >> par init args: 0 argvp[i] ./rams60 >> par init args: 1 argvp[i] -f >> par init args: 2 argvp[i] RAMSIN.operatiu >> par init RAMS_MPI defined >> >> Mpich options to compile RAMS model >> >> MPI_PATH=/usr/local/mpich2-1.0.5p4 >> PAR_INCS=-I$(MPI_PATH)/src/include >> PAR_LIBS=-L$(MPI_PATH)/lib/ -lmpich >> PAR_DEFS=-DRAMS_MPI >> >> Thank you very much for your help. >> >> -- >> ----------- >> Dr. Francisco Pastor >> Meteorology department, Instituto Universitario CEAM-UMH >> http://www.ceam.es >> ----------- >> Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ >> Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es >> Researcher ID: http://www.researcherid.com/rid/B-8331-2008 >> Cosis profile: http://www.cosis.net/profile/francisco.pastor >> ----------- >> mail: paco(a)ceam.es >> skype: paco.pastor.guzman >> ----------- >> Parque Tecnologico, C/ Charles R. Darwin, 14 >> 46980 PATERNA (Valencia), Spain >> Tlf. 96 131 82 27 - Fax. 96 131 81 90 >> >> >> --------------------------------------------------------------------- >> Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen informaciï¿½n reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvï¿½o a su direcciï¿½n electrï¿½nica; no deberï¿½ copiar el mensaje ni divulgar su contenido a ninguna persona. >> >> Su direcciï¿½n de correo electrï¿½nico junto a sus datos personales forman parte de un fichero titularidad de la Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgï¿½nica 15/1999, usted puede ejercitar sus derechos de acceso, rectificaciï¿½n, cancelaciï¿½n y, en su caso, oposiciï¿½n enviando una solicitud por escrito, acompaï¿½ada de una fotocopia de su DNI dirigida a: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). >> >> This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. >> >> Your email address and personal data are included in a file belonging to the Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). >> >> >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > -- ----------- Dr. Francisco Pastor Meteorology department, Instituto Universitario CEAM-UMH http://www.ceam.es ----------- Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/ Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es Researcher ID: http://www.researcherid.com/rid/B-8331-2008 Cosis profile: http://www.cosis.net/profile/francisco.pastor ----------- mail: paco(a)ceam.es skype: paco.pastor.guzman ----------- Parque Tecnologico, C/ Charles R. Darwin, 14 46980 PATERNA (Valencia), Spain Tlf. 96 131 82 27 - Fax. 96 131 81 90 --------------------------------------------------------------------- Este mensaje y los ficheros anexos son confidenciales. Los mismos contienen informaciï¿½n reservada de la empresa que no puede ser difundida. Si usted ha recibido este correo por error, tenga la amabilidad de eliminarlo de su sistema y avisar al remitente mediante reenvï¿½o a su direcciï¿½n electrï¿½nica; no deberï¿½ copiar el mensaje ni divulgar su contenido a ninguna persona. Su direcciï¿½n de correo electrï¿½nico junto a sus datos personales forman parte de un fichero titularidad de la Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213, cuya finalidad es la de mantener el contacto con Ud. De acuerdo con la Ley Orgï¿½nica 15/1999, usted puede ejercitar sus derechos de acceso, rectificaciï¿½n, cancelaciï¿½n y, en su caso, oposiciï¿½n enviando una solicitud por escrito, acompaï¿½ada de una fotocopia de su DNI dirigida a: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia). This message and the attached files are confidential. They contain reserved information belonging to our centre and are not to be broadcast. If you have received this email by mistake, please delete it from your system and alert the sender by returning it to his/her email address. You must not copy or divulge the contents of the message to anyone. Your email address and personal data are included in a file belonging to the Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM, con CIF: G-46957213. The purpose of this file is to allow us to keep in contact with you. In accordance with Organic Law 15/1999, you are permitted to access, rectify, cancel or oppose the contents of this file by submitting a written request, accompanied by a photocopy of your DNI, to: Fundaciï¿½n de la Comunidad Valenciana Centro de Estudios Ambientales del Mediterrï¿½neo - CEAM. C/ Charles R. Darwin, 14. Parque Tecnolï¿½gico.46980 PATERNA (Valencia).

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